RNA–Protein interactions for RNA: ENST00000617998.4

POLR2A-209, Transcript of RNA polymerase II subunit A, humanhuman

TSL 1 (best)

Gene POLR2A, Length 6,751 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2A-209ENST00000617998 DCAF8L2P0C7V8 631 aa20.69■□□□□ 0.9
POLR2A-209ENST00000617998 NISCHQ9Y2I1 1504 aa18.98■□□□□ 0.63
POLR2A-209ENST00000617998 FAM9AQ8IZU1 332 aaPredicted RBP18.52■□□□□ 0.55
POLR2A-209ENST00000617998 SUPT5HO00267 1087 aaKnown RBP18.17■□□□□ 0.5
POLR2A-209ENST00000617998 SHROOM4Q9ULL8 1493 aa18.14■□□□□ 0.49
POLR2A-209ENST00000617998 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
POLR2A-209ENST00000617998 ABCC9O60706 1549 aa17.69■□□□□ 0.42
POLR2A-209ENST00000617998 APLP2Q06481 763 aa17.66■□□□□ 0.42
POLR2A-209ENST00000617998 ATP1B4Q9UN42 357 aaPredicted RBP17.59■□□□□ 0.41
POLR2A-209ENST00000617998 MYT1LQ9UL68 1186 aa17.56■□□□□ 0.4
POLR2A-209ENST00000617998 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
POLR2A-209ENST00000617998 TTBK1Q5TCY1 1321 aaPredicted RBP17.49■□□□□ 0.39
POLR2A-209ENST00000617998 RANGAP1P46060 587 aaPredicted RBP17.48■□□□□ 0.39
POLR2A-209ENST00000617998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.32■□□□□ 0.36
POLR2A-209ENST00000617998 HNRNPUL2Q1KMD3 747 aaKnown RBP17.32■□□□□ 0.36
POLR2A-209ENST00000617998 FBLN2P98095 1184 aa17.17■□□□□ 0.34
POLR2A-209ENST00000617998 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
POLR2A-209ENST00000617998 UBTFP17480 764 aaKnown RBP17■□□□□ 0.31
POLR2A-209ENST00000617998 TRIM41Q8WV44 630 aa16.93■□□□□ 0.3
POLR2A-209ENST00000617998 NPM1P06748 294 aaKnown RBP eCLIP16.79■□□□□ 0.28
POLR2A-209ENST00000617998 ESF1Q9H501 851 aaKnown RBP16.69■□□□□ 0.26
POLR2A-209ENST00000617998 PLPPR3Q6T4P5 718 aa16.69■□□□□ 0.26
POLR2A-209ENST00000617998 TRHP20396 242 aaPredicted RBP16.59■□□□□ 0.25
POLR2A-209ENST00000617998 BCANQ96GW7 911 aa16.58■□□□□ 0.24
POLR2A-209ENST00000617998 SLC4A1APQ9BWU0 796 aaKnown RBP16.41■□□□□ 0.22
POLR2A-209ENST00000617998 AEBP2Q6ZN18 517 aaPredicted RBP16.41■□□□□ 0.22
POLR2A-209ENST00000617998 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
POLR2A-209ENST00000617998 ITGAEP38570 1179 aa16.32■□□□□ 0.2
POLR2A-209ENST00000617998 CHMP7Q8WUX9 453 aaPredicted RBP16.3■□□□□ 0.2
POLR2A-209ENST00000617998 ARID3CA6NKF2 412 aa16.27■□□□□ 0.19
POLR2A-209ENST00000617998 SCRIBQ14160 1630 aa16.26■□□□□ 0.19
POLR2A-209ENST00000617998 STAG3Q9UJ98 1225 aa16.24■□□□□ 0.19
POLR2A-209ENST00000617998 RB1CC1Q8TDY2 1594 aa16.22■□□□□ 0.19
POLR2A-209ENST00000617998 POLR3GLQ9BT43 218 aa16.19■□□□□ 0.18
POLR2A-209ENST00000617998 ARID4BQ4LE39 1312 aaPredicted RBP16.18■□□□□ 0.18
POLR2A-209ENST00000617998 CDK11AQ9UQ88 783 aaPredicted RBP16.11■□□□□ 0.17
POLR2A-209ENST00000617998 ZNF777Q9ULD5 760 aaPredicted RBP16.09■□□□□ 0.17
POLR2A-209ENST00000617998 PCGF6Q9BYE7 350 aa16.07■□□□□ 0.16
POLR2A-209ENST00000617998 P3H3Q8IVL6 736 aa16.05■□□□□ 0.16
POLR2A-209ENST00000617998 TRIM52Q96A61 297 aa16.02■□□□□ 0.16
POLR2A-209ENST00000617998 FAM50AQ14320 339 aaKnown RBP16.02■□□□□ 0.15
POLR2A-209ENST00000617998 SCAF1Q9H7N4 1312 aaKnown RBP15.98■□□□□ 0.15
POLR2A-209ENST00000617998 CHGAP10645 457 aaKnown RBP15.97■□□□□ 0.15
POLR2A-209ENST00000617998 PPARGC1BQ86YN6 1023 aaKnown RBP15.95■□□□□ 0.14
POLR2A-209ENST00000617998 SLC24A1O60721 1099 aa15.94■□□□□ 0.14
POLR2A-209ENST00000617998 C14orf37Q86TY3 774 aa15.94■□□□□ 0.14
POLR2A-209ENST00000617998 KCNH8Q96L42 1107 aa15.92■□□□□ 0.14
POLR2A-209ENST00000617998 CCER1Q8TC90 406 aaPredicted RBP15.9■□□□□ 0.14
POLR2A-209ENST00000617998 A0A0G2JS52 829 aa15.87■□□□□ 0.13
POLR2A-209ENST00000617998 CNGB1Q14028 1251 aaPredicted RBP15.85■□□□□ 0.13
POLR2A-209ENST00000617998 HAP1P54257 671 aaPredicted RBP15.82■□□□□ 0.12
POLR2A-209ENST00000617998 CCDC180Q9P1Z9 1646 aa15.8■□□□□ 0.12
POLR2A-209ENST00000617998 SENP3Q9H4L4 574 aaPredicted RBP15.79■□□□□ 0.12
POLR2A-209ENST00000617998 NACADO15069 1562 aa15.77■□□□□ 0.12
POLR2A-209ENST00000617998 ZNF326Q5BKZ1 582 aaKnown RBP15.76■□□□□ 0.11
POLR2A-209ENST00000617998 PELP1Q8IZL8 1130 aaKnown RBP15.76■□□□□ 0.11
POLR2A-209ENST00000617998 PPP1R15AO75807 674 aaPredicted RBP15.75■□□□□ 0.11
POLR2A-209ENST00000617998 PLEKHG5O94827 1062 aa15.7■□□□□ 0.1
POLR2A-209ENST00000617998 MYT1Q01538 1121 aa15.67■□□□□ 0.1
POLR2A-209ENST00000617998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.12e-9■■□□□ 13.7
POLR2A-209ENST00000617998 BAZ1BQ9UIG0 1483 aaKnown RBP15.66■□□□□ 0.1
POLR2A-209ENST00000617998 CECR2Q9BXF3 1484 aa15.66■□□□□ 0.1
POLR2A-209ENST00000617998 MLECQ14165 292 aa15.64■□□□□ 0.09
POLR2A-209ENST00000617998 NEFMP07197 916 aa15.64■□□□□ 0.09
POLR2A-209ENST00000617998 PLEKHD1A6NEE1 506 aa15.63■□□□□ 0.09
POLR2A-209ENST00000617998 CYB5RLQ6IPT4 315 aa15.62■□□□□ 0.09
POLR2A-209ENST00000617998 TSPY4P0CV99 314 aa15.61■□□□□ 0.09
POLR2A-209ENST00000617998 TSPY10P0CW01 314 aa15.61■□□□□ 0.09
POLR2A-209ENST00000617998 OSCARQ8IYS5 282 aa15.61■□□□□ 0.09
POLR2A-209ENST00000617998 ZBTB7CA1YPR0 619 aa15.58■□□□□ 0.09
POLR2A-209ENST00000617998 PDS5BQ9NTI5 1447 aa15.56■□□□□ 0.08
POLR2A-209ENST00000617998 NPM2Q86SE8 214 aaKnown RBP15.54■□□□□ 0.08
POLR2A-209ENST00000617998 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
POLR2A-209ENST00000617998 LMOD2Q6P5Q4 547 aa15.46■□□□□ 0.07
POLR2A-209ENST00000617998 NEUROD1Q13562 356 aa15.44■□□□□ 0.06
POLR2A-209ENST00000617998 PHF23Q9BUL5 403 aaPredicted RBP15.39■□□□□ 0.05
POLR2A-209ENST00000617998 LOC105371045A0A1W2PR82 267 aa15.39■□□□□ 0.05
POLR2A-209ENST00000617998 ZCCHC6Q5VYS8 1495 aaKnown RBP15.38■□□□□ 0.05
POLR2A-209ENST00000617998 HDGFP51858 240 aaKnown RBP15.36■□□□□ 0.05
POLR2A-209ENST00000617998 ZBTB47Q9UFB7 747 aaPredicted RBP15.33■□□□□ 0.04
POLR2A-209ENST00000617998 DCAF8L1A6NGE4 600 aa15.31■□□□□ 0.04
POLR2A-209ENST00000617998 NEFLP07196 543 aa15.31■□□□□ 0.04
POLR2A-209ENST00000617998 CHIC2Q9UKJ5 165 aa15.31■□□□□ 0.04
POLR2A-209ENST00000617998 ZEB1P37275 1124 aaPredicted RBP15.31■□□□□ 0.04
POLR2A-209ENST00000617998 MTUS2Q5JR59 1369 aa15.3■□□□□ 0.04
POLR2A-209ENST00000617998 CCDC9Q9Y3X0 531 aaKnown RBP15.28■□□□□ 0.04
POLR2A-209ENST00000617998 NPHP1O15259 732 aa15.27■□□□□ 0.03
POLR2A-209ENST00000617998 MEX3CQ5U5Q3 659 aaKnown RBP15.23■□□□□ 0.03
POLR2A-209ENST00000617998 CARMIL2Q6F5E8 1435 aa15.23■□□□□ 0.03
POLR2A-209ENST00000617998 CFDP1Q9UEE9 299 aaPredicted RBP15.23■□□□□ 0.03
POLR2A-209ENST00000617998 ARXQ96QS3 562 aa15.22■□□□□ 0.03
POLR2A-209ENST00000617998 EIF4G1Q04637 1599 aaKnown RBP15.21■□□□□ 0.03
POLR2A-209ENST00000617998 BCL11AQ9H165 835 aa15.21■□□□□ 0.02
POLR2A-209ENST00000617998 FAM69CQ0P6D2 419 aa15.2■□□□□ 0.02
POLR2A-209ENST00000617998 GGT6Q6P531 493 aa15.19■□□□□ 0.02
POLR2A-209ENST00000617998 FOXD1Q16676 465 aa15.15■□□□□ 0.02
POLR2A-209ENST00000617998 SMARCA2P51531 1590 aa15.14■□□□□ 0.01
POLR2A-209ENST00000617998 KIF27Q86VH2 1401 aa15.13■□□□□ 0.01
POLR2A-209ENST00000617998 EID1Q9Y6B2 187 aa15.13■□□□□ 0.01
POLR2A-209ENST00000617998 POGKQ9P215 609 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms