Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TRAPPC9-208ENST00000520857 3693 ntTSL 1 (best)12.91□□□□□ -0.345e-6■■■□□ 19.1
YBX3P16989 CUX1-204ENST00000393824 2331 ntTSL 2 BASIC12.61□□□□□ -0.395e-6■■■□□ 19.1
YBX3P16989 ZFAND5-201ENST00000237937 5310 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.435e-6■■■□□ 19.1
YBX3P16989 TRAPPC9-202ENST00000438773 4297 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.485e-6■■■□□ 19.1
YBX3P16989 STRN-201ENST00000263918 8168 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.535e-6■■■□□ 19.1
YBX3P16989 PTPRF-203ENST00000372407 4600 ntTSL 211.66□□□□□ -0.549e-8■■■□□ 19.1
YBX3P16989 ETS2-202ENST00000360938 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.545e-6■■■□□ 19.1
YBX3P16989 MAN2B2-204ENST00000505907 7719 ntAPPRIS ALT2 TSL 211.66□□□□□ -0.545e-6■■■□□ 19.1
YBX3P16989 RAB31-201ENST00000435762 518 ntTSL 311.55□□□□□ -0.565e-6■■■□□ 19.1
YBX3P16989 OSBPL6-206ENST00000409045 3427 ntTSL 2 BASIC11.46□□□□□ -0.585e-6■■■□□ 19.1
YBX3P16989 ALDH9A1-203ENST00000463610 559 ntTSL 211.27□□□□□ -0.615e-6■■■□□ 19.1
YBX3P16989 TAF2-201ENST00000378164 5048 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.635e-6■■■□□ 19.1
YBX3P16989 RAB31-212ENST00000583921 583 ntTSL 411.08□□□□□ -0.645e-6■■■□□ 19.1
YBX3P16989 OSBPL6-205ENST00000392505 3637 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.665e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-203ENST00000464093 1632 ntTSL 510.42□□□□□ -0.745e-6■■■□□ 19.1
YBX3P16989 OSBPL6-204ENST00000359685 7114 ntTSL 5 BASIC10.29□□□□□ -0.765e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-210ENST00000497790 573 ntTSL 310.24□□□□□ -0.775e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-202ENST00000411406 450 ntTSL 210.11□□□□□ -0.795e-6■■■□□ 19.1
YBX3P16989 TAF2-209ENST00000529653 1237 ntTSL 510.01□□□□□ -0.815e-6■■■□□ 19.1
YBX3P16989 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.855e-6■■■□□ 19.1
YBX3P16989 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.95e-6■■■□□ 19.1
YBX3P16989 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC7.95□□□□□ -1.145e-6■■■□□ 19.1
YBX3P16989 ATF7IP-207ENST00000535738 619 ntTSL 26.79□□□□□ -1.325e-6■■■□□ 19.1
YBX3P16989 TAF2-208ENST00000526969 547 ntTSL 26.28□□□□□ -1.45e-6■■■□□ 19.1
YBX3P16989 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.535e-6■■■□□ 19.1
YBX3P16989 RAB31-204ENST00000577796 295 ntTSL 35.4□□□□□ -1.545e-6■■■□□ 19.1
YBX3P16989 PDS5B-209ENST00000498550 4238 ntTSL 1 (best)4.79□□□□□ -1.645e-6■■■□□ 19.1
YBX3P16989 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.655e-6■■■□□ 19.1
YBX3P16989 RAB31-203ENST00000577371 272 ntTSL 34.67□□□□□ -1.665e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-204ENST00000464880 609 ntTSL 34.56□□□□□ -1.685e-6■■■□□ 19.1
YBX3P16989 PDS5B-203ENST00000450460 5246 ntTSL 1 (best)4.4□□□□□ -1.715e-6■■■□□ 19.1
YBX3P16989 PDE9A-214ENST00000460905 715 ntTSL 530.99■■■□□ 2.551e-6■■■□□ 19.1
YBX3P16989 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC25.72■■□□□ 1.711e-6■■■□□ 19.1
YBX3P16989 PDE9A-216ENST00000462571 1784 ntTSL 1 (best)24.01■■□□□ 1.431e-6■■■□□ 19.1
YBX3P16989 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC24.01■■□□□ 1.431e-6■■■□□ 19.1
YBX3P16989 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC23.14■■□□□ 1.291e-6■■■□□ 19.1
YBX3P16989 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22.74■■□□□ 1.231e-6■■■□□ 19.1
YBX3P16989 PDE9A-215ENST00000460989 1521 ntTSL 1 (best)22.4■■□□□ 1.181e-6■■■□□ 19.1
YBX3P16989 PDE9A-227ENST00000495521 1565 ntTSL 1 (best)21.95■■□□□ 1.111e-6■■■□□ 19.1
YBX3P16989 PDE9A-220ENST00000468805 1721 ntTSL 1 (best)21.53■■□□□ 1.041e-6■■■□□ 19.1
YBX3P16989 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.53■■□□□ 1.041e-6■■■□□ 19.1
YBX3P16989 PDE9A-225ENST00000490803 1865 ntTSL 1 (best)21.22■□□□□ 0.991e-6■■■□□ 19.1
YBX3P16989 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.02■□□□□ 0.81e-6■■■□□ 19.1
YBX3P16989 PDE9A-228ENST00000497805 1908 ntTSL 1 (best)19.86■□□□□ 0.771e-6■■■□□ 19.1
YBX3P16989 PDE9A-221ENST00000470987 1954 ntTSL 1 (best)19■□□□□ 0.631e-6■■■□□ 19.1
YBX3P16989 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.22■□□□□ 0.511e-6■■■□□ 19.1
YBX3P16989 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC15.84■□□□□ 0.131e-6■■■□□ 19.1
YBX3P16989 PDE9A-211ENST00000398232 1885 ntTSL 1 (best) BASIC15.77■□□□□ 0.111e-6■■■□□ 19.1
YBX3P16989 PDE9A-219ENST00000467403 1661 ntTSL 1 (best)15.59■□□□□ 0.091e-6■■■□□ 19.1
YBX3P16989 PDE9A-223ENST00000486902 794 ntTSL 213.61□□□□□ -0.231e-6■■■□□ 19.1
YBX3P16989 PDE9A-222ENST00000472401 431 ntTSL 313.61□□□□□ -0.231e-6■■■□□ 19.1
YBX3P16989 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC13.35□□□□□ -0.271e-6■■■□□ 19.1
YBX3P16989 PDE9A-204ENST00000335512 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.481e-6■■■□□ 19.1
YBX3P16989 PDE9A-210ENST00000398229 1684 ntTSL 1 (best) BASIC11.44□□□□□ -0.581e-6■■■□□ 19.1
YBX3P16989 PDE9A-207ENST00000398224 1671 ntTSL 1 (best) BASIC11.44□□□□□ -0.581e-6■■■□□ 19.1
YBX3P16989 TRMT1L-202ENST00000458395 735 ntTSL 36.98□□□□□ -1.291e-8■■■□□ 19.1
YBX3P16989 ZNF562-208ENST00000590155 1712 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.691e-7■■■□□ 19.1
YBX3P16989 ZNF562-204ENST00000585688 1475 ntTSL 27.28□□□□□ -1.241e-7■■■□□ 19.1
YBX3P16989 NLE1-205ENST00000588642 580 ntTSL 216.86■□□□□ 0.292e-8■■■□□ 19.1
YBX3P16989 AGBL5-207ENST00000453161 673 ntTSL 315.48■□□□□ 0.077e-8■■■□□ 19.1
YBX3P16989 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC29.31■■■□□ 2.287e-7■■■□□ 19.1
YBX3P16989 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.26■□□□□ 0.197e-7■■■□□ 19.1
YBX3P16989 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC15.6■□□□□ 0.097e-7■■■□□ 19.1
YBX3P16989 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.027e-7■■■□□ 19.1
YBX3P16989 NEDD4L-220ENST00000587881 1984 ntTSL 514.62□□□□□ -0.075e-6■■■□□ 19.1
YBX3P16989 NEDD4L-224ENST00000588712 2066 ntTSL 212.42□□□□□ -0.427e-7■■■□□ 19.1
YBX3P16989 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC12.31□□□□□ -0.447e-7■■■□□ 19.1
YBX3P16989 NEDD4L-206ENST00000431212 3338 ntTSL 1 (best) BASIC10.45□□□□□ -0.747e-7■■■□□ 19.1
YBX3P16989 NEDD4L-234ENST00000592097 582 ntTSL 310.4□□□□□ -0.745e-6■■■□□ 19.1
YBX3P16989 NEDD4L-201ENST00000256830 2920 ntTSL 5 BASIC9.91□□□□□ -0.827e-7■■■□□ 19.1
YBX3P16989 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.887e-7■■■□□ 19.1
YBX3P16989 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.967e-7■■■□□ 19.1
YBX3P16989 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.037e-7■■■□□ 19.1
YBX3P16989 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC8.56□□□□□ -1.047e-7■■■□□ 19.1
YBX3P16989 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC8.09□□□□□ -1.117e-7■■■□□ 19.1
YBX3P16989 NEDD4L-229ENST00000590506 2743 ntTSL 27.82□□□□□ -1.167e-7■■■□□ 19.1
YBX3P16989 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.955e-6■■■□□ 19.1
YBX3P16989 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.485e-6■■■□□ 19.1
YBX3P16989 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.195e-6■■■□□ 19.1
YBX3P16989 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC10.07□□□□□ -0.81e-21■■■□□ 19.1
YBX3P16989 TMEM106C-222ENST00000615597 685 ntTSL 210.42□□□□□ -0.742e-7■■■□□ 19.1
YBX3P16989 TMEM106C-205ENST00000547136 707 ntTSL 28□□□□□ -1.132e-7■■■□□ 19.1
YBX3P16989 NELFE-208ENST00000481121 1543 ntTSL 226.99■■□□□ 1.913e-7■■■□□ 19.1
YBX3P16989 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.693e-7■■■□□ 19.1
YBX3P16989 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.653e-7■■■□□ 19.1
YBX3P16989 NELFE-211ENST00000492185 1786 ntTSL 222.09■■□□□ 1.133e-7■■■□□ 19.1
YBX3P16989 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.673e-7■■■□□ 19.1
YBX3P16989 NELFE-209ENST00000488426 1855 ntTSL 515.98■□□□□ 0.153e-7■■■□□ 19.1
YBX3P16989 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC33.92■■■■□ 3.025e-6■■■□□ 19.1
YBX3P16989 MED17-210ENST00000533359 847 ntTSL 431.72■■■□□ 2.675e-6■■■□□ 19.1
YBX3P16989 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.455e-6■■■□□ 19.1
YBX3P16989 MED17-213ENST00000638294 809 ntTSL 530.28■■■□□ 2.445e-6■■■□□ 19.1
YBX3P16989 MED17-226ENST00000640473 705 ntTSL 529.67■■■□□ 2.345e-6■■■□□ 19.1
YBX3P16989 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.92■■■□□ 2.225e-6■■■□□ 19.1
YBX3P16989 MED17-225ENST00000640451 1704 ntTSL 528.63■■■□□ 2.175e-6■■■□□ 19.1
YBX3P16989 MED17-218ENST00000639457 1798 ntTSL 528.57■■■□□ 2.165e-6■■■□□ 19.1
YBX3P16989 MED17-215ENST00000638518 805 ntTSL 528.53■■■□□ 2.165e-6■■■□□ 19.1
YBX3P16989 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC28.12■■■□□ 2.095e-6■■■□□ 19.1
YBX3P16989 MED17-205ENST00000528786 656 ntTSL 527.77■■■□□ 2.045e-6■■■□□ 19.1
YBX3P16989 ALDH9A1-202ENST00000461664 899 ntTSL 327.46■■□□□ 1.995e-6■■■□□ 19.1
Retrieved 100 of 29,075 protein–RNA pairs in 386.7 ms