RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 NISCHQ9Y2I1 1504 aa56.09■■■■■ 6.57
ATPAF1-213ENST00000574428 CCDC180Q9P1Z9 1646 aa49.26■■■■■ 5.48
ATPAF1-213ENST00000574428 ABCC9O60706 1549 aa47.21■■■■■ 5.15
ATPAF1-213ENST00000574428 ZCCHC6Q5VYS8 1495 aaKnown RBP46.98■■■■■ 5.11
ATPAF1-213ENST00000574428 DCAF8L2P0C7V8 631 aa46.51■■■■■ 5.04
ATPAF1-213ENST00000574428 DCAF1Q9Y4B6 1507 aa46.36■■■■■ 5.01
ATPAF1-213ENST00000574428 MYO15BQ96JP2 1530 aa46.07■■■■■ 4.97
ATPAF1-213ENST00000574428 NACADO15069 1562 aa46.02■■■■■ 4.96
ATPAF1-213ENST00000574428 RB1CC1Q8TDY2 1594 aa45.82■■■■■ 4.92
ATPAF1-213ENST00000574428 SHROOM4Q9ULL8 1493 aa45.25■■■■■ 4.83
ATPAF1-213ENST00000574428 SCRIBQ14160 1630 aa45.22■■■■■ 4.83
ATPAF1-213ENST00000574428 UNC13AQ9UPW8 1703 aa44.87■■■■■ 4.77
ATPAF1-213ENST00000574428 BICRAQ9NZM4 1560 aa44.45■■■■■ 4.71
ATPAF1-213ENST00000574428 PABPN1Q86U42 306 aaKnown RBP eCLIP44.36■■■■■ 4.69
ATPAF1-213ENST00000574428 CECR2Q9BXF3 1484 aa43.64■■■■■ 4.58
ATPAF1-213ENST00000574428 BAZ1AQ9NRL2 1556 aaPredicted RBP43.37■■■■■ 4.53
ATPAF1-213ENST00000574428 MROH2BQ7Z745 1585 aa43.31■■■■■ 4.52
ATPAF1-213ENST00000574428 SMARCA4P51532 1647 aa43.28■■■■■ 4.52
ATPAF1-213ENST00000574428 RSF1Q96T23 1441 aaPredicted RBP43.22■■■■■ 4.51
ATPAF1-213ENST00000574428 EIF4G1Q04637 1599 aaKnown RBP43.17■■■■■ 4.5
ATPAF1-213ENST00000574428 SUPT5HO00267 1087 aaKnown RBP43.15■■■■■ 4.5
ATPAF1-213ENST00000574428 WIZO95785 1651 aa42.93■■■■■ 4.46
ATPAF1-213ENST00000574428 PEG3Q9GZU2 1588 aa42.77■■■■■ 4.44
ATPAF1-213ENST00000574428 ATAD2BQ9ULI0 1458 aa42.72■■■■■ 4.43
ATPAF1-213ENST00000574428 CC2D2AQ9P2K1 1620 aa42.71■■■■■ 4.43
ATPAF1-213ENST00000574428 SMARCA2P51531 1590 aa42.69■■■■■ 4.42
ATPAF1-213ENST00000574428 TOP2AP11388 1531 aaKnown RBP42.47■■■■■ 4.39
ATPAF1-213ENST00000574428 NCAPD3P42695 1498 aa42.46■■■■■ 4.39
ATPAF1-213ENST00000574428 BAZ1BQ9UIG0 1483 aaKnown RBP42.46■■■■■ 4.39
ATPAF1-213ENST00000574428 HMGXB3Q12766 1538 aa42.38■■■■■ 4.37
ATPAF1-213ENST00000574428 DNAJC5BQ9UF47 199 aa42.25■■■■■ 4.35
ATPAF1-213ENST00000574428 CCDC88BA6NC98 1476 aa42■■■■■ 4.31
ATPAF1-213ENST00000574428 CFTRP13569 1480 aa41.34■■■■■ 4.21
ATPAF1-213ENST00000574428 CADPSQ9ULU8 1353 aa41.32■■■■■ 4.21
ATPAF1-213ENST00000574428 NESP48681 1621 aa41.23■■■■■ 4.19
ATPAF1-213ENST00000574428 LAMC3Q9Y6N6 1575 aa41.16■■■■■ 4.18
ATPAF1-213ENST00000574428 PRDM2Q13029 1718 aa41.11■■■■■ 4.17
ATPAF1-213ENST00000574428 CHIC1Q5VXU3 224 aa40.91■■■■■ 4.14
ATPAF1-213ENST00000574428 ABCC8Q09428 1581 aa40.91■■■■■ 4.14
ATPAF1-213ENST00000574428 FANCD2Q9BXW9 1451 aa40.89■■■■■ 4.14
ATPAF1-213ENST00000574428 PDS5BQ9NTI5 1447 aa40.85■■■■■ 4.13
ATPAF1-213ENST00000574428 KIF21AQ7Z4S6 1674 aa40.75■■■■■ 4.11
ATPAF1-213ENST00000574428 CEP164Q9UPV0 1460 aa40.71■■■■■ 4.11
ATPAF1-213ENST00000574428 WRNQ14191 1432 aaPredicted RBP eCLIP40.71■■■■■ 4.11
ATPAF1-213ENST00000574428 TRIM41Q8WV44 630 aa40.62■■■■■ 4.09
ATPAF1-213ENST00000574428 SYNJ1O43426 1573 aa40.61■■■■■ 4.09
ATPAF1-213ENST00000574428 CUX1P39880 1505 aa40.56■■■■■ 4.08
ATPAF1-213ENST00000574428 ERCC6Q03468 1493 aa40.55■■■■■ 4.08
ATPAF1-213ENST00000574428 TOP2BQ02880 1626 aa40.48■■■■■ 4.07
ATPAF1-213ENST00000574428 BIVM-ERCC5R4GMW8 1640 aa40.46■■■■■ 4.07
ATPAF1-213ENST00000574428 URB2Q14146 1524 aaKnown RBP40.44■■■■■ 4.06
ATPAF1-213ENST00000574428 DNMBPQ6XZF7 1577 aa40.41■■■■■ 4.06
ATPAF1-213ENST00000574428 MRC2Q9UBG0 1479 aa40.39■■■■■ 4.06
ATPAF1-213ENST00000574428 TOPBP1Q92547 1522 aa40.38■■■■■ 4.05
ATPAF1-213ENST00000574428 THOC2Q8NI27 1593 aaKnown RBP40.27■■■■■ 4.04
ATPAF1-213ENST00000574428 FGD5Q6ZNL6 1462 aa40.22■■■■■ 4.03
ATPAF1-213ENST00000574428 WDR62O43379 1518 aa40.21■■■■■ 4.03
ATPAF1-213ENST00000574428 POLA1P09884 1462 aaPredicted RBP40.12■■■■■ 4.01
ATPAF1-213ENST00000574428 RAD54L2Q9Y4B4 1467 aa39.99■■■■□ 3.99
ATPAF1-213ENST00000574428 SOGA1O94964 1423 aa39.98■■■■□ 3.99
ATPAF1-213ENST00000574428 CUX2O14529 1486 aa39.91■■■■□ 3.98
ATPAF1-213ENST00000574428 FAM9AQ8IZU1 332 aaPredicted RBP39.87■■■■□ 3.97
ATPAF1-213ENST00000574428 RUSC2Q8N2Y8 1516 aa39.87■■■■□ 3.97
ATPAF1-213ENST00000574428 TARBP1Q13395 1621 aaKnown RBP39.84■■■■□ 3.97
ATPAF1-213ENST00000574428 ABCA10Q8WWZ4 1543 aa39.83■■■■□ 3.97
ATPAF1-213ENST00000574428 WDR97A6NE52 1622 aa39.8■■■■□ 3.96
ATPAF1-213ENST00000574428 IFT140Q96RY7 1462 aa39.77■■■■□ 3.96
ATPAF1-213ENST00000574428 KIF27Q86VH2 1401 aa39.74■■■■□ 3.95
ATPAF1-213ENST00000574428 EEA1Q15075 1411 aa39.73■■■■□ 3.95
ATPAF1-213ENST00000574428 TDRD9Q8NDG6 1382 aaKnown RBP39.65■■■■□ 3.94
ATPAF1-213ENST00000574428 ZNF608Q9ULD9 1512 aaPredicted RBP39.59■■■■□ 3.93
ATPAF1-213ENST00000574428 ABCA5Q8WWZ7 1642 aa39.59■■■■□ 3.93
ATPAF1-213ENST00000574428 CSRNP3Q8WYN3 585 aa39.56■■■■□ 3.92
ATPAF1-213ENST00000574428 GAPVD1Q14C86 1478 aa39.53■■■■□ 3.92
ATPAF1-213ENST00000574428 AQRO60306 1485 aaKnown RBP eCLIP39.52■■■■□ 3.92
ATPAF1-213ENST00000574428 EIF4G3O43432 1585 aaKnown RBP39.47■■■■□ 3.91
ATPAF1-213ENST00000574428 IGF1RP08069 1367 aa39.44■■■■□ 3.9
ATPAF1-213ENST00000574428 PBRM1Q86U86 1689 aa39.39■■■■□ 3.9
ATPAF1-213ENST00000574428 EHMT2Q96KQ7 1210 aa39.36■■■■□ 3.89
ATPAF1-213ENST00000574428 ERICH3Q5RHP9 1530 aa39.35■■■■□ 3.89
ATPAF1-213ENST00000574428 GRIN2BQ13224 1484 aa39.33■■■■□ 3.89
ATPAF1-213ENST00000574428 LOC105371045A0A1W2PR82 267 aa39.33■■■■□ 3.89
ATPAF1-213ENST00000574428 PRXQ9BXM0 1461 aa39.29■■■■□ 3.88
ATPAF1-213ENST00000574428 KIF21BO75037 1637 aa39.28■■■■□ 3.88
ATPAF1-213ENST00000574428 CUL7Q14999 1698 aa39.25■■■■□ 3.87
ATPAF1-213ENST00000574428 CARMIL1Q5VZK9 1371 aa39.24■■■■□ 3.87
ATPAF1-213ENST00000574428 RAPGEF2Q9Y4G8 1499 aa39.2■■■■□ 3.87
ATPAF1-213ENST00000574428 GOLGA3Q08378 1498 aa39.17■■■■□ 3.86
ATPAF1-213ENST00000574428 SNAPC4Q5SXM2 1469 aa39.17■■■■□ 3.86
ATPAF1-213ENST00000574428 ADAMTS12P58397 1594 aa39.14■■■■□ 3.86
ATPAF1-213ENST00000574428 FHAD1B1AJZ9 1412 aa39.08■■■■□ 3.85
ATPAF1-213ENST00000574428 MAGI1Q96QZ7 1491 aaPredicted RBP39.08■■■■□ 3.85
ATPAF1-213ENST00000574428 UBTFP17480 764 aaKnown RBP39.01■■■■□ 3.84
ATPAF1-213ENST00000574428 SYNJ2O15056 1496 aa38.93■■■■□ 3.82
ATPAF1-213ENST00000574428 TNIKQ9UKE5 1360 aa38.88■■■■□ 3.81
ATPAF1-213ENST00000574428 CHMP7Q8WUX9 453 aaPredicted RBP38.85■■■■□ 3.81
ATPAF1-213ENST00000574428 GRIN2AQ12879 1464 aa38.85■■■■□ 3.81
ATPAF1-213ENST00000574428 FBLN2P98095 1184 aa38.84■■■■□ 3.81
ATPAF1-213ENST00000574428 CHD1O14646 1710 aa38.75■■■■□ 3.79
ATPAF1-213ENST00000574428 CTTNBP2Q8WZ74 1663 aa38.72■■■■□ 3.79
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms