Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.346e-13■■■■■ 55.9
LSM11P83369 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.376e-13■■■■■ 55.9
LSM11P83369 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.396e-13■■■■■ 55.9
LSM11P83369 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC12.58□□□□□ -0.46e-13■■■■■ 55.9
LSM11P83369 ZNF277-206ENST00000450657 1075 ntTSL 1 (best) BASIC12.3□□□□□ -0.446e-13■■■■■ 55.9
LSM11P83369 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.486e-13■■■■■ 55.9
LSM11P83369 ZNF277-205ENST00000425229 617 ntTSL 311.48□□□□□ -0.576e-13■■■■■ 55.9
LSM11P83369 ZFAND3-207ENST00000474522 563 ntTSL 510.93□□□□□ -0.666e-13■■■■■ 55.9
LSM11P83369 ZNF277-203ENST00000421043 2218 ntTSL 2 BASIC9.6□□□□□ -0.876e-13■■■■■ 55.9
LSM11P83369 ZFAND3-202ENST00000373389 531 ntTSL 59.55□□□□□ -0.886e-13■■■■■ 55.9
LSM11P83369 ELAVL1-204ENST00000596154 880 ntTSL 38.9□□□□□ -0.986e-13■■■■■ 55.9
LSM11P83369 IGF2BP3-207ENST00000468263 706 ntTSL 215.32■□□□□ 0.047e-8■■■■■ 55.8
LSM11P83369 IGF2BP3-202ENST00000421467 2988 ntTSL 59.15□□□□□ -0.947e-8■■■■■ 55.8
LSM11P83369 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.377e-8■■■■■ 55.8
LSM11P83369 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.96■□□□□ 0.956e-13■■■■■ 55.6
LSM11P83369 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.266e-13■■■■■ 55.6
LSM11P83369 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.086e-13■■■■■ 55.6
LSM11P83369 KLHL3-206ENST00000505853 1570 ntTSL 216.32■□□□□ 0.29e-7■■■■■ 55
LSM11P83369 KLHL3-208ENST00000506873 1883 ntTSL 213.43□□□□□ -0.269e-7■■■■■ 55
LSM11P83369 KLHL3-203ENST00000502381 928 ntTSL 1 (best)11.88□□□□□ -0.519e-7■■■■■ 55
LSM11P83369 KLHL3-207ENST00000506491 6566 ntTSL 1 (best) BASIC10.01□□□□□ -0.819e-7■■■■■ 55
LSM11P83369 KLHL3-201ENST00000309755 6806 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.849e-7■■■■■ 55
LSM11P83369 KLHL3-204ENST00000504208 1566 ntTSL 28.79□□□□□ -19e-7■■■■■ 55
LSM11P83369 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC8□□□□□ -1.139e-7■■■■■ 55
LSM11P83369 MUC22-201ENST00000561890 6019 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.083e-7■■■■■ 54.2
LSM11P83369 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.292e-12■■■■■ 54
LSM11P83369 ESYT2-202ENST00000275418 3251 ntAPPRIS ALT2 TSL 519.21■□□□□ 0.672e-12■■■■■ 54
LSM11P83369 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.482e-12■■■■■ 54
LSM11P83369 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.442e-12■■■■■ 54
LSM11P83369 AKAP17A-203ENST00000474361 3232 ntTSL 1 (best)17.81■□□□□ 0.442e-12■■■■■ 54
LSM11P83369 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.282e-12■■■■■ 54
LSM11P83369 ESYT2-204ENST00000483958 546 ntTSL 48.76□□□□□ -1.012e-12■■■■■ 54
LSM11P83369 CAPZA1-205ENST00000485542 739 ntTSL 213.18□□□□□ -0.39e-12■■■■■ 54
LSM11P83369 CAPZA1-201ENST00000263168 3020 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.799e-12■■■■■ 54
LSM11P83369 CAPZA1-204ENST00000476936 867 ntTSL 39.63□□□□□ -0.879e-12■■■■■ 54
LSM11P83369 CAPZA1-206ENST00000498626 650 ntTSL 59.35□□□□□ -0.919e-12■■■■■ 54
LSM11P83369 MNAT1-207ENST00000556525 469 ntTSL 312.63□□□□□ -0.392e-9■■■■■ 53.3
LSM11P83369 RNU6-9-201ENST00000384776 107 ntBASIC6.46□□□□□ -1.385e-15■■■■■ 53.2
LSM11P83369 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.481e-7■■■■■ 52.7
LSM11P83369 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC11.09□□□□□ -0.631e-7■■■■■ 52.7
LSM11P83369 SMIM14-202ENST00000505729 612 ntTSL 410.9□□□□□ -0.661e-7■■■■■ 52.7
LSM11P83369 SMIM14-204ENST00000510628 634 ntTSL 39.53□□□□□ -0.881e-7■■■■■ 52.7
LSM11P83369 SMIM14-203ENST00000507613 680 ntTSL 27.26□□□□□ -1.251e-7■■■■■ 52.7
LSM11P83369 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC12.95□□□□□ -0.345e-12■■■■■ 52.1
LSM11P83369 CLTCL1-210ENST00000617926 1695 ntTSL 2 BASIC12.13□□□□□ -0.475e-12■■■■■ 52.1
LSM11P83369 CLTCL1-209ENST00000617103 4859 ntTSL 1 (best)9.45□□□□□ -0.95e-12■■■■■ 52.1
LSM11P83369 CLTCL1-202ENST00000427926 5513 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.015e-12■■■■■ 52.1
LSM11P83369 CLTCL1-211ENST00000621271 5313 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.045e-12■■■■■ 52.1
LSM11P83369 CLTCL1-208ENST00000615606 4994 ntTSL 1 (best)8.3□□□□□ -1.085e-12■■■■■ 52.1
LSM11P83369 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.345e-8■■■■■ 51.2
LSM11P83369 RNU6-32P-201ENST00000383948 107 ntBASIC6.46□□□□□ -1.388e-9■■■■■ 51
LSM11P83369 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.438e-9■■■■■ 51
LSM11P83369 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.68e-9■■■■■ 51
LSM11P83369 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.941e-11■■■■■ 50.1
LSM11P83369 PNKP-220ENST00000627232 1530 ntTSL 520.48■□□□□ 0.871e-11■■■■■ 50.1
LSM11P83369 PNKP-203ENST00000593946 1723 ntTSL 1 (best)19.04■□□□□ 0.641e-11■■■■■ 50.1
LSM11P83369 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.45■□□□□ 0.541e-11■■■■■ 50.1
LSM11P83369 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.4■□□□□ 0.541e-11■■■■■ 50.1
LSM11P83369 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.341e-11■■■■■ 50.1
LSM11P83369 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.69■□□□□ 0.261e-11■■■■■ 50.1
LSM11P83369 PNKP-204ENST00000594661 2111 ntTSL 214.09□□□□□ -0.151e-11■■■■■ 50.1
LSM11P83369 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.31e-11■■■■■ 50.1
LSM11P83369 XRCC4-206ENST00000542685 1243 ntTSL 1 (best)13.19□□□□□ -0.31e-11■■■■■ 50.1
LSM11P83369 PNKP-221ENST00000627317 767 ntTSL 513.08□□□□□ -0.321e-11■■■■■ 50.1
LSM11P83369 PNKP-202ENST00000593706 849 ntTSL 312.9□□□□□ -0.341e-11■■■■■ 50.1
LSM11P83369 PNKP-223ENST00000629179 811 ntTSL 412.4□□□□□ -0.421e-11■■■■■ 50.1
LSM11P83369 PNKP-228ENST00000637325 100 ntTSL 511.94□□□□□ -0.51e-11■■■■■ 50.1
LSM11P83369 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC11.5□□□□□ -0.571e-11■■■■■ 50.1
LSM11P83369 RPS24-202ENST00000372360 510 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.581e-11■■■■■ 50.1
LSM11P83369 RPS24-209ENST00000476545 815 ntTSL 311.26□□□□□ -0.611e-11■■■■■ 50.1
LSM11P83369 XRCC4-201ENST00000282268 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.741e-11■■■■■ 50.1
LSM11P83369 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC10.12□□□□□ -0.791e-11■■■■■ 50.1
LSM11P83369 RPS24-213ENST00000485708 544 ntTSL 29.74□□□□□ -0.851e-11■■■■■ 50.1
LSM11P83369 RPS24-212ENST00000482069 539 ntTSL 39.66□□□□□ -0.861e-11■■■■■ 50.1
LSM11P83369 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC9.39□□□□□ -0.911e-11■■■■■ 50.1
LSM11P83369 XRCC4-204ENST00000509268 1567 ntTSL 29.37□□□□□ -0.911e-11■■■■■ 50.1
LSM11P83369 RPS24-206ENST00000465692 778 ntTSL 29.11□□□□□ -0.951e-11■■■■■ 50.1
LSM11P83369 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC9.06□□□□□ -0.961e-11■■■■■ 50.1
LSM11P83369 RPS24-211ENST00000480662 711 ntTSL 28.55□□□□□ -1.041e-11■■■■■ 50.1
LSM11P83369 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC7.57□□□□□ -1.21e-11■■■■■ 50.1
LSM11P83369 CALN1-205ENST00000431984 777 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.765e-8■■■■■ 49.3
LSM11P83369 CALN1-202ENST00000395275 9459 ntAPPRIS ALT1 TSL 5 BASIC9.26□□□□□ -0.935e-8■■■■■ 49.3
LSM11P83369 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.555e-8■■■■■ 49.3
LSM11P83369 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.551e-21■■■■■ 49.2
LSM11P83369 PHF14-214ENST00000521747 2479 ntTSL 221.57■■□□□ 1.042e-7■■■■■ 49
LSM11P83369 PHF14-202ENST00000423760 2627 ntTSL 220.51■□□□□ 0.872e-7■■■■■ 49
LSM11P83369 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.092e-7■■■■■ 49
LSM11P83369 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.43□□□□□ -0.262e-7■■■■■ 49
LSM11P83369 PHF14-204ENST00000470665 1005 ntTSL 212.21□□□□□ -0.452e-7■■■■■ 49
LSM11P83369 PHF14-208ENST00000481418 792 ntTSL 310.81□□□□□ -0.682e-7■■■■■ 49
LSM11P83369 MKL2-207ENST00000573051 1938 ntTSL 1 (best) BASIC8.55□□□□□ -1.041e-10■■■■■ 48.4
LSM11P83369 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC7.73□□□□□ -1.171e-10■■■■■ 48.4
LSM11P83369 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.291e-10■■■■■ 48.4
LSM11P83369 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.33□□□□□ -1.41e-10■■■■■ 48.4
LSM11P83369 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.471e-10■■■■■ 48.4
LSM11P83369 MKL2-210ENST00000574998 545 ntTSL 45.33□□□□□ -1.561e-10■■■■■ 48.4
LSM11P83369 MKL2-212ENST00000575768 389 ntTSL 33.32□□□□□ -1.881e-10■■■■■ 48.4
LSM11P83369 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.25■□□□□ 0.034e-11■■■■■ 48.2
LSM11P83369 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.51□□□□□ -0.094e-11■■■■■ 48.2
LSM11P83369 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.75□□□□□ -0.214e-11■■■■■ 48.2
Retrieved 100 of 11,495 protein–RNA pairs in 275.4 ms