RNA–Protein interactions for RNA: ENST00000504208.5

KLHL3-204, Transcript of kelch like family member 3, humanhuman

TSL 2

Gene KLHL3, Length 1,566 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-204ENST00000504208 NISCHQ9Y2I1 1504 aa21.37■■□□□ 1.01
KLHL3-204ENST00000504208 CCDC180Q9P1Z9 1646 aa18.96■□□□□ 0.63
KLHL3-204ENST00000504208 ABCC9O60706 1549 aa18.04■□□□□ 0.48
KLHL3-204ENST00000504208 ZCCHC6Q5VYS8 1495 aaKnown RBP17.93■□□□□ 0.46
KLHL3-204ENST00000504208 DCAF1Q9Y4B6 1507 aa17.71■□□□□ 0.42
KLHL3-204ENST00000504208 NACADO15069 1562 aa17.63■□□□□ 0.41
KLHL3-204ENST00000504208 MYO15BQ96JP2 1530 aa17.61■□□□□ 0.41
KLHL3-204ENST00000504208 RB1CC1Q8TDY2 1594 aa17.58■□□□□ 0.4
KLHL3-204ENST00000504208 DCAF8L2P0C7V8 631 aa17.57■□□□□ 0.4
KLHL3-204ENST00000504208 UNC13AQ9UPW8 1703 aa17.35■□□□□ 0.37
KLHL3-204ENST00000504208 SCRIBQ14160 1630 aa17.31■□□□□ 0.36
KLHL3-204ENST00000504208 SHROOM4Q9ULL8 1493 aa17.12■□□□□ 0.33
KLHL3-204ENST00000504208 BICRAQ9NZM4 1560 aa17.04■□□□□ 0.32
KLHL3-204ENST00000504208 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
KLHL3-204ENST00000504208 SUPT5HO00267 1087 aaKnown RBP16.61■□□□□ 0.25
KLHL3-204ENST00000504208 CECR2Q9BXF3 1484 aa16.59■□□□□ 0.25
KLHL3-204ENST00000504208 SMARCA4P51532 1647 aa16.58■□□□□ 0.24
KLHL3-204ENST00000504208 BAZ1AQ9NRL2 1556 aaPredicted RBP16.57■□□□□ 0.24
KLHL3-204ENST00000504208 EIF4G1Q04637 1599 aaKnown RBP16.55■□□□□ 0.24
KLHL3-204ENST00000504208 DNAJC5BQ9UF47 199 aa16.52■□□□□ 0.24
KLHL3-204ENST00000504208 MROH2BQ7Z745 1585 aa16.49■□□□□ 0.23
KLHL3-204ENST00000504208 WIZO95785 1651 aa16.41■□□□□ 0.22
KLHL3-204ENST00000504208 CC2D2AQ9P2K1 1620 aa16.4■□□□□ 0.22
KLHL3-204ENST00000504208 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
KLHL3-204ENST00000504208 PEG3Q9GZU2 1588 aa16.38■□□□□ 0.21
KLHL3-204ENST00000504208 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
KLHL3-204ENST00000504208 ATAD2BQ9ULI0 1458 aa16.29■□□□□ 0.2
KLHL3-204ENST00000504208 HMGXB3Q12766 1538 aa16.25■□□□□ 0.19
KLHL3-204ENST00000504208 TOP2AP11388 1531 aaKnown RBP16.22■□□□□ 0.19
KLHL3-204ENST00000504208 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.19
KLHL3-204ENST00000504208 NCAPD3P42695 1498 aa16.19■□□□□ 0.18
KLHL3-204ENST00000504208 CHIC1Q5VXU3 224 aa16.14■□□□□ 0.17
KLHL3-204ENST00000504208 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.15
KLHL3-204ENST00000504208 PRDM2Q13029 1718 aa15.92■□□□□ 0.14
KLHL3-204ENST00000504208 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
KLHL3-204ENST00000504208 CFTRP13569 1480 aa15.75■□□□□ 0.11
KLHL3-204ENST00000504208 NESP48681 1621 aa15.75■□□□□ 0.11
KLHL3-204ENST00000504208 CADPSQ9ULU8 1353 aa15.72■□□□□ 0.11
KLHL3-204ENST00000504208 KIF21AQ7Z4S6 1674 aa15.71■□□□□ 0.11
KLHL3-204ENST00000504208 TRIM41Q8WV44 630 aa15.7■□□□□ 0.1
KLHL3-204ENST00000504208 FANCD2Q9BXW9 1451 aa15.6■□□□□ 0.09
KLHL3-204ENST00000504208 ABCC8Q09428 1581 aa15.59■□□□□ 0.09
KLHL3-204ENST00000504208 CEP164Q9UPV0 1460 aa15.58■□□□□ 0.08
KLHL3-204ENST00000504208 PDS5BQ9NTI5 1447 aa15.57■□□□□ 0.08
KLHL3-204ENST00000504208 ERCC6Q03468 1493 aa15.52■□□□□ 0.08
KLHL3-204ENST00000504208 THOC2Q8NI27 1593 aaKnown RBP15.51■□□□□ 0.07
KLHL3-204ENST00000504208 BIVM-ERCC5R4GMW8 1640 aa15.51■□□□□ 0.07
KLHL3-204ENST00000504208 SYNJ1O43426 1573 aa15.51■□□□□ 0.07
KLHL3-204ENST00000504208 DNMBPQ6XZF7 1577 aa15.47■□□□□ 0.07
KLHL3-204ENST00000504208 CUX1P39880 1505 aa15.47■□□□□ 0.07
KLHL3-204ENST00000504208 TOP2BQ02880 1626 aa15.47■□□□□ 0.07
KLHL3-204ENST00000504208 WRNQ14191 1432 aaPredicted RBP eCLIP15.46■□□□□ 0.07
KLHL3-204ENST00000504208 MRC2Q9UBG0 1479 aa15.46■□□□□ 0.07
KLHL3-204ENST00000504208 URB2Q14146 1524 aaKnown RBP15.44■□□□□ 0.06
KLHL3-204ENST00000504208 LOC105371045A0A1W2PR82 267 aa15.44■□□□□ 0.06
KLHL3-204ENST00000504208 WDR62O43379 1518 aa15.43■□□□□ 0.06
KLHL3-204ENST00000504208 TOPBP1Q92547 1522 aa15.42■□□□□ 0.06
KLHL3-204ENST00000504208 EEA1Q15075 1411 aa15.38■□□□□ 0.05
KLHL3-204ENST00000504208 FGD5Q6ZNL6 1462 aa15.35■□□□□ 0.05
KLHL3-204ENST00000504208 WDR97A6NE52 1622 aa15.33■□□□□ 0.05
KLHL3-204ENST00000504208 CUX2O14529 1486 aa15.31■□□□□ 0.04
KLHL3-204ENST00000504208 POLA1P09884 1462 aaPredicted RBP15.31■□□□□ 0.04
KLHL3-204ENST00000504208 FAM9AQ8IZU1 332 aaPredicted RBP15.28■□□□□ 0.04
KLHL3-204ENST00000504208 TARBP1Q13395 1621 aaKnown RBP15.27■□□□□ 0.03
KLHL3-204ENST00000504208 RAD54L2Q9Y4B4 1467 aa15.22■□□□□ 0.03
KLHL3-204ENST00000504208 CSRNP3Q8WYN3 585 aa15.19■□□□□ 0.02
KLHL3-204ENST00000504208 ABCA10Q8WWZ4 1543 aa15.19■□□□□ 0.02
KLHL3-204ENST00000504208 ABCA5Q8WWZ7 1642 aa15.19■□□□□ 0.02
KLHL3-204ENST00000504208 IFT140Q96RY7 1462 aa15.19■□□□□ 0.02
KLHL3-204ENST00000504208 PBRM1Q86U86 1689 aa15.18■□□□□ 0.02
KLHL3-204ENST00000504208 SOGA1O94964 1423 aa15.18■□□□□ 0.02
KLHL3-204ENST00000504208 EIF4G3O43432 1585 aaKnown RBP15.17■□□□□ 0.02
KLHL3-204ENST00000504208 TNIKQ9UKE5 1360 aa15.13■□□□□ 0.01
KLHL3-204ENST00000504208 RUSC2Q8N2Y8 1516 aa15.11■□□□□ 0.01
KLHL3-204ENST00000504208 ZNF608Q9ULD9 1512 aaPredicted RBP15.11■□□□□ 0.01
KLHL3-204ENST00000504208 TRIM26Q12899 539 aaPredicted RBP15.11■□□□□ 0.01
KLHL3-204ENST00000504208 KIF27Q86VH2 1401 aa15.09■□□□□ 0.01
KLHL3-204ENST00000504208 GOLGA3Q08378 1498 aa15.08■□□□□ 0
KLHL3-204ENST00000504208 GAPVD1Q14C86 1478 aa15.07■□□□□ 0
KLHL3-204ENST00000504208 CUL7Q14999 1698 aa15.06■□□□□ 0
KLHL3-204ENST00000504208 TDRD9Q8NDG6 1382 aaKnown RBP15.05■□□□□ -0
KLHL3-204ENST00000504208 PCGF6Q9BYE7 350 aa15.05■□□□□ -0
KLHL3-204ENST00000504208 KIF21BO75037 1637 aa15.05■□□□□ -0
KLHL3-204ENST00000504208 ERICH3Q5RHP9 1530 aa15.04■□□□□ -0
KLHL3-204ENST00000504208 AQRO60306 1485 aaKnown RBP eCLIP15.03■□□□□ -0
KLHL3-204ENST00000504208 ADAMTS12P58397 1594 aa15.01□□□□□ -0.01
KLHL3-204ENST00000504208 GRIN2BQ13224 1484 aa15□□□□□ -0.01
KLHL3-204ENST00000504208 CEP162Q5TB80 1403 aa14.99□□□□□ -0.01
KLHL3-204ENST00000504208 DNAJC5Q9H3Z4 198 aa14.99□□□□□ -0.01
KLHL3-204ENST00000504208 SNAPC4Q5SXM2 1469 aa14.97□□□□□ -0.01
KLHL3-204ENST00000504208 UBTFP17480 764 aaKnown RBP14.96□□□□□ -0.01
KLHL3-204ENST00000504208 CHD1O14646 1710 aa14.95□□□□□ -0.02
KLHL3-204ENST00000504208 EHMT2Q96KQ7 1210 aa14.94□□□□□ -0.02
KLHL3-204ENST00000504208 MAGI1Q96QZ7 1491 aaPredicted RBP14.94□□□□□ -0.02
KLHL3-204ENST00000504208 IGF1RP08069 1367 aa14.93□□□□□ -0.02
KLHL3-204ENST00000504208 HRCP23327 699 aa14.93□□□□□ -0.02
KLHL3-204ENST00000504208 PRXQ9BXM0 1461 aa14.93□□□□□ -0.02
KLHL3-204ENST00000504208 CTTNBP2Q8WZ74 1663 aa14.91□□□□□ -0.02
KLHL3-204ENST00000504208 FHAD1B1AJZ9 1412 aa14.88□□□□□ -0.03
KLHL3-204ENST00000504208 RAPGEF2Q9Y4G8 1499 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms