RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
CLTCL1-211ENST00000621271 NISCHQ9Y2I1 1504 aa16.9■□□□□ 0.3
CLTCL1-211ENST00000621271 SUPT5HO00267 1087 aaKnown RBP16.11■□□□□ 0.17
CLTCL1-211ENST00000621271 SHROOM4Q9ULL8 1493 aa15.81■□□□□ 0.12
CLTCL1-211ENST00000621271 FAM9AQ8IZU1 332 aaPredicted RBP15.76■□□□□ 0.11
CLTCL1-211ENST00000621271 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
CLTCL1-211ENST00000621271 APLP2Q06481 763 aa15.6■□□□□ 0.09
CLTCL1-211ENST00000621271 RANGAP1P46060 587 aaPredicted RBP15.18■□□□□ 0.02
CLTCL1-211ENST00000621271 ATP1B4Q9UN42 357 aaPredicted RBP15.18■□□□□ 0.02
CLTCL1-211ENST00000621271 TTBK1Q5TCY1 1321 aaPredicted RBP15.11■□□□□ 0.01
CLTCL1-211ENST00000621271 PELP1Q8IZL8 1130 aaKnown RBP15.09■□□□□ 0.01
CLTCL1-211ENST00000621271 TRIM41Q8WV44 630 aa14.96□□□□□ -0.01
CLTCL1-211ENST00000621271 ABCC9O60706 1549 aa14.96□□□□□ -0.02
CLTCL1-211ENST00000621271 UBTFP17480 764 aaKnown RBP14.92□□□□□ -0.02
CLTCL1-211ENST00000621271 MYT1LQ9UL68 1186 aa14.86□□□□□ -0.03
CLTCL1-211ENST00000621271 PCGF6Q9BYE7 350 aa14.83□□□□□ -0.04
CLTCL1-211ENST00000621271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.76□□□□□ -0.05
CLTCL1-211ENST00000621271 HNRNPUL2Q1KMD3 747 aaKnown RBP14.76□□□□□ -0.05
CLTCL1-211ENST00000621271 ZEB1P37275 1124 aaPredicted RBP14.64□□□□□ -0.07
CLTCL1-211ENST00000621271 CCER1Q8TC90 406 aaPredicted RBP14.63□□□□□ -0.07
CLTCL1-211ENST00000621271 CCDC180Q9P1Z9 1646 aa14.59□□□□□ -0.07
CLTCL1-211ENST00000621271 CENPBP07199 599 aaPredicted RBP14.56□□□□□ -0.08
CLTCL1-211ENST00000621271 MYT1Q01538 1121 aa14.5□□□□□ -0.09
CLTCL1-211ENST00000621271 CHIC1Q5VXU3 224 aa14.5□□□□□ -0.09
CLTCL1-211ENST00000621271 ERICH6Q7L0X2 663 aa14.42□□□□□ -0.1
CLTCL1-211ENST00000621271 HRCP23327 699 aa14.41□□□□□ -0.1
CLTCL1-211ENST00000621271 ITGAEP38570 1179 aa14.41□□□□□ -0.1
CLTCL1-211ENST00000621271 PABPN1Q86U42 306 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLTCL1-211ENST00000621271 POLR3GLQ9BT43 218 aa14.37□□□□□ -0.11
CLTCL1-211ENST00000621271 NEFLP07196 543 aa14.35□□□□□ -0.11
CLTCL1-211ENST00000621271 PPARGC1BQ86YN6 1023 aaKnown RBP14.34□□□□□ -0.11
CLTCL1-211ENST00000621271 SLC4A1APQ9BWU0 796 aaKnown RBP14.3□□□□□ -0.12
CLTCL1-211ENST00000621271 FBLN2P98095 1184 aa14.28□□□□□ -0.12
CLTCL1-211ENST00000621271 TRIM26Q12899 539 aaPredicted RBP14.24□□□□□ -0.13
CLTCL1-211ENST00000621271 RB1CC1Q8TDY2 1594 aa14.23□□□□□ -0.13
CLTCL1-211ENST00000621271 YTHDC1Q96MU7 727 aaKnown RBP14.15□□□□□ -0.14
CLTCL1-211ENST00000621271 CNGB1Q14028 1251 aaPredicted RBP14.15□□□□□ -0.14
CLTCL1-211ENST00000621271 NACADO15069 1562 aa14.11□□□□□ -0.15
CLTCL1-211ENST00000621271 FAM50AQ14320 339 aaKnown RBP14.07□□□□□ -0.16
CLTCL1-211ENST00000621271 TRIM52Q96A61 297 aa14.05□□□□□ -0.16
CLTCL1-211ENST00000621271 BCANQ96GW7 911 aa14.04□□□□□ -0.16
CLTCL1-211ENST00000621271 DAXXQ9UER7 740 aaPredicted RBP14.03□□□□□ -0.16
CLTCL1-211ENST00000621271 ESF1Q9H501 851 aaKnown RBP13.98□□□□□ -0.17
CLTCL1-211ENST00000621271 ZCCHC6Q5VYS8 1495 aaKnown RBP13.95□□□□□ -0.18
CLTCL1-211ENST00000621271 LOC105371045A0A1W2PR82 267 aa13.94□□□□□ -0.18
CLTCL1-211ENST00000621271 NPM1P06748 294 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLTCL1-211ENST00000621271 ZNF326Q5BKZ1 582 aaKnown RBP13.88□□□□□ -0.19
CLTCL1-211ENST00000621271 ARID3CA6NKF2 412 aa13.87□□□□□ -0.19
CLTCL1-211ENST00000621271 SCRIBQ14160 1630 aa13.87□□□□□ -0.19
CLTCL1-211ENST00000621271 SLC24A1O60721 1099 aa13.86□□□□□ -0.19
CLTCL1-211ENST00000621271 CLSPNQ9HAW4 1339 aa13.84□□□□□ -0.19
CLTCL1-211ENST00000621271 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.2
CLTCL1-211ENST00000621271 CDK11AQ9UQ88 783 aaPredicted RBP13.82□□□□□ -0.2
CLTCL1-211ENST00000621271 ZNF777Q9ULD5 760 aaPredicted RBP13.81□□□□□ -0.2
CLTCL1-211ENST00000621271 NEUROD1Q13562 356 aa13.8□□□□□ -0.2
CLTCL1-211ENST00000621271 P3H3Q8IVL6 736 aa13.8□□□□□ -0.2
CLTCL1-211ENST00000621271 STAG3Q9UJ98 1225 aa13.78□□□□□ -0.2
CLTCL1-211ENST00000621271 NEFMP07197 916 aa13.78□□□□□ -0.2
CLTCL1-211ENST00000621271 DIEXFQ68CQ4 756 aaKnown RBP13.77□□□□□ -0.2
CLTCL1-211ENST00000621271 ZBTB47Q9UFB7 747 aaPredicted RBP13.76□□□□□ -0.21
CLTCL1-211ENST00000621271 DCAF1Q9Y4B6 1507 aa13.76□□□□□ -0.21
CLTCL1-211ENST00000621271 MYO15BQ96JP2 1530 aa13.73□□□□□ -0.21
CLTCL1-211ENST00000621271 CHGAP10645 457 aaKnown RBP13.68□□□□□ -0.22
CLTCL1-211ENST00000621271 GTF3C3Q9Y5Q9 886 aa13.65□□□□□ -0.22
CLTCL1-211ENST00000621271 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
CLTCL1-211ENST00000621271 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
CLTCL1-211ENST00000621271 CANXP27824 592 aaKnown RBP13.59□□□□□ -0.23
CLTCL1-211ENST00000621271 CHMP7Q8WUX9 453 aaPredicted RBP13.58□□□□□ -0.23
CLTCL1-211ENST00000621271 BCL11AQ9H165 835 aa13.58□□□□□ -0.24
CLTCL1-211ENST00000621271 ANP32CO43423 234 aa13.55□□□□□ -0.24
CLTCL1-211ENST00000621271 ACIN1Q9UKV3 1341 aaKnown RBP13.55□□□□□ -0.24
CLTCL1-211ENST00000621271 SCAF1Q9H7N4 1312 aaKnown RBP13.51□□□□□ -0.25
CLTCL1-211ENST00000621271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLTCL1-211ENST00000621271 TSPY4P0CV99 314 aa13.46□□□□□ -0.26
CLTCL1-211ENST00000621271 TSPY10P0CW01 314 aa13.46□□□□□ -0.26
CLTCL1-211ENST00000621271 A0A0G2JS52 829 aa13.44□□□□□ -0.26
CLTCL1-211ENST00000621271 RTL5Q5HYW3 569 aaPredicted RBP13.43□□□□□ -0.26
CLTCL1-211ENST00000621271 C14orf37Q86TY3 774 aa13.42□□□□□ -0.26
CLTCL1-211ENST00000621271 ARID4BQ4LE39 1312 aaPredicted RBP13.41□□□□□ -0.26
CLTCL1-211ENST00000621271 CECR2Q9BXF3 1484 aa13.4□□□□□ -0.26
CLTCL1-211ENST00000621271 PPP1R15AO75807 674 aaPredicted RBP13.39□□□□□ -0.27
CLTCL1-211ENST00000621271 KCNH8Q96L42 1107 aa13.39□□□□□ -0.27
CLTCL1-211ENST00000621271 NPM2Q86SE8 214 aaKnown RBP13.38□□□□□ -0.27
CLTCL1-211ENST00000621271 ERCC6Q03468 1493 aa13.37□□□□□ -0.27
CLTCL1-211ENST00000621271 BAZ1BQ9UIG0 1483 aaKnown RBP13.35□□□□□ -0.27
CLTCL1-211ENST00000621271 CHIC2Q9UKJ5 165 aa13.35□□□□□ -0.27
CLTCL1-211ENST00000621271 HAP1P54257 671 aaPredicted RBP13.33□□□□□ -0.27
CLTCL1-211ENST00000621271 TONSLQ96HA7 1378 aa13.33□□□□□ -0.28
CLTCL1-211ENST00000621271 TRHP20396 242 aaPredicted RBP13.32□□□□□ -0.28
CLTCL1-211ENST00000621271 PLEKHG5O94827 1062 aa13.32□□□□□ -0.28
CLTCL1-211ENST00000621271 ZBTB7CA1YPR0 619 aa13.31□□□□□ -0.28
CLTCL1-211ENST00000621271 PLEKHD1A6NEE1 506 aa13.31□□□□□ -0.28
CLTCL1-211ENST00000621271 BAZ1AQ9NRL2 1556 aaPredicted RBP13.3□□□□□ -0.28
CLTCL1-211ENST00000621271 MTUS2Q5JR59 1369 aa13.29□□□□□ -0.28
CLTCL1-211ENST00000621271 SENP3Q9H4L4 574 aaPredicted RBP13.26□□□□□ -0.29
CLTCL1-211ENST00000621271 SMARCA2P51531 1590 aa13.25□□□□□ -0.29
CLTCL1-211ENST00000621271 KDM2AQ9Y2K7 1162 aa13.25□□□□□ -0.29
CLTCL1-211ENST00000621271 PDS5BQ9NTI5 1447 aa13.18□□□□□ -0.3
CLTCL1-211ENST00000621271 WDR43Q15061 677 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLTCL1-211ENST00000621271 HSP90AA1P07900 732 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms