RNA–Protein interactions for RNA: ENST00000615606.4

CLTCL1-208, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,994 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-208ENST00000615606 NISCHQ9Y2I1 1504 aa17.41■□□□□ 0.38
CLTCL1-208ENST00000615606 DCAF8L2P0C7V8 631 aa17.1■□□□□ 0.33
CLTCL1-208ENST00000615606 SUPT5HO00267 1087 aaKnown RBP15.95■□□□□ 0.14
CLTCL1-208ENST00000615606 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
CLTCL1-208ENST00000615606 EHMT2Q96KQ7 1210 aa15.13■□□□□ 0.01
CLTCL1-208ENST00000615606 ABCC9O60706 1549 aa15.05■□□□□ -0
CLTCL1-208ENST00000615606 FAM9AQ8IZU1 332 aaPredicted RBP15.04■□□□□ -0
CLTCL1-208ENST00000615606 APLP2Q06481 763 aa15.01□□□□□ -0.01
CLTCL1-208ENST00000615606 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
CLTCL1-208ENST00000615606 PABPN1Q86U42 306 aaKnown RBP eCLIP14.72□□□□□ -0.05
CLTCL1-208ENST00000615606 RANGAP1P46060 587 aaPredicted RBP14.68□□□□□ -0.06
CLTCL1-208ENST00000615606 UBTFP17480 764 aaKnown RBP14.66□□□□□ -0.06
CLTCL1-208ENST00000615606 CCDC180Q9P1Z9 1646 aa14.6□□□□□ -0.07
CLTCL1-208ENST00000615606 ATP1B4Q9UN42 357 aaPredicted RBP14.6□□□□□ -0.07
CLTCL1-208ENST00000615606 TTBK1Q5TCY1 1321 aaPredicted RBP14.56□□□□□ -0.08
CLTCL1-208ENST00000615606 ZCCHC6Q5VYS8 1495 aaKnown RBP14.42□□□□□ -0.1
CLTCL1-208ENST00000615606 PCGF6Q9BYE7 350 aa14.35□□□□□ -0.11
CLTCL1-208ENST00000615606 SCRIBQ14160 1630 aa14.32□□□□□ -0.12
CLTCL1-208ENST00000615606 CHIC1Q5VXU3 224 aa14.31□□□□□ -0.12
CLTCL1-208ENST00000615606 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
CLTCL1-208ENST00000615606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.25□□□□□ -0.13
CLTCL1-208ENST00000615606 HNRNPUL2Q1KMD3 747 aaKnown RBP14.25□□□□□ -0.13
CLTCL1-208ENST00000615606 CCER1Q8TC90 406 aaPredicted RBP14.19□□□□□ -0.14
CLTCL1-208ENST00000615606 ZEB1P37275 1124 aaPredicted RBP14.17□□□□□ -0.14
CLTCL1-208ENST00000615606 NACADO15069 1562 aa14.14□□□□□ -0.15
CLTCL1-208ENST00000615606 MYT1LQ9UL68 1186 aa14.11□□□□□ -0.15
CLTCL1-208ENST00000615606 LOC105371045A0A1W2PR82 267 aa14.1□□□□□ -0.15
CLTCL1-208ENST00000615606 PPARGC1BQ86YN6 1023 aaKnown RBP14.1□□□□□ -0.15
CLTCL1-208ENST00000615606 PELP1Q8IZL8 1130 aaKnown RBP14.07□□□□□ -0.16
CLTCL1-208ENST00000615606 FBLN2P98095 1184 aa14.01□□□□□ -0.17
CLTCL1-208ENST00000615606 TRIM26Q12899 539 aaPredicted RBP14.01□□□□□ -0.17
CLTCL1-208ENST00000615606 ITGAEP38570 1179 aa13.99□□□□□ -0.17
CLTCL1-208ENST00000615606 DCAF1Q9Y4B6 1507 aa13.92□□□□□ -0.18
CLTCL1-208ENST00000615606 CSRNP3Q8WYN3 585 aa13.88□□□□□ -0.19
CLTCL1-208ENST00000615606 FAM50AQ14320 339 aaKnown RBP13.8□□□□□ -0.2
CLTCL1-208ENST00000615606 BAZ1BQ9UIG0 1483 aaKnown RBP13.77□□□□□ -0.21
CLTCL1-208ENST00000615606 RSF1Q96T23 1441 aaPredicted RBP13.76□□□□□ -0.21
CLTCL1-208ENST00000615606 CENPBP07199 599 aaPredicted RBP13.73□□□□□ -0.21
CLTCL1-208ENST00000615606 P3H3Q8IVL6 736 aa13.72□□□□□ -0.21
CLTCL1-208ENST00000615606 BAZ1AQ9NRL2 1556 aaPredicted RBP13.71□□□□□ -0.21
CLTCL1-208ENST00000615606 CDK11AQ9UQ88 783 aaPredicted RBP13.69□□□□□ -0.22
CLTCL1-208ENST00000615606 TRIM52Q96A61 297 aa13.67□□□□□ -0.22
CLTCL1-208ENST00000615606 MYO15BQ96JP2 1530 aa13.64□□□□□ -0.23
CLTCL1-208ENST00000615606 POLR3GLQ9BT43 218 aa13.63□□□□□ -0.23
CLTCL1-208ENST00000615606 ARID3CA6NKF2 412 aa13.63□□□□□ -0.23
CLTCL1-208ENST00000615606 NPM1P06748 294 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLTCL1-208ENST00000615606 CHMP7Q8WUX9 453 aaPredicted RBP13.61□□□□□ -0.23
CLTCL1-208ENST00000615606 CECR2Q9BXF3 1484 aa13.58□□□□□ -0.24
CLTCL1-208ENST00000615606 ERCC6Q03468 1493 aa13.56□□□□□ -0.24
CLTCL1-208ENST00000615606 WRNQ14191 1432 aaPredicted RBP eCLIP13.54□□□□□ -0.24
CLTCL1-208ENST00000615606 ZNF777Q9ULD5 760 aaPredicted RBP13.53□□□□□ -0.24
CLTCL1-208ENST00000615606 HRCP23327 699 aa13.52□□□□□ -0.24
CLTCL1-208ENST00000615606 NEFLP07196 543 aa13.52□□□□□ -0.24
CLTCL1-208ENST00000615606 EEA1Q15075 1411 aa13.51□□□□□ -0.25
CLTCL1-208ENST00000615606 SMARCA2P51531 1590 aa13.49□□□□□ -0.25
CLTCL1-208ENST00000615606 YTHDC1Q96MU7 727 aaKnown RBP13.48□□□□□ -0.25
CLTCL1-208ENST00000615606 SLC4A1APQ9BWU0 796 aaKnown RBP13.48□□□□□ -0.25
CLTCL1-208ENST00000615606 NEUROD1Q13562 356 aa13.47□□□□□ -0.25
CLTCL1-208ENST00000615606 ERICH6Q7L0X2 663 aa13.47□□□□□ -0.25
CLTCL1-208ENST00000615606 KIF27Q86VH2 1401 aa13.45□□□□□ -0.26
CLTCL1-208ENST00000615606 MROH2BQ7Z745 1585 aa13.42□□□□□ -0.26
CLTCL1-208ENST00000615606 ESF1Q9H501 851 aaKnown RBP13.42□□□□□ -0.26
CLTCL1-208ENST00000615606 ZNF326Q5BKZ1 582 aaKnown RBP13.39□□□□□ -0.27
CLTCL1-208ENST00000615606 MYT1Q01538 1121 aa13.39□□□□□ -0.27
CLTCL1-208ENST00000615606 CNGB1Q14028 1251 aaPredicted RBP13.39□□□□□ -0.27
CLTCL1-208ENST00000615606 GOLGA3Q08378 1498 aa13.38□□□□□ -0.27
CLTCL1-208ENST00000615606 CLIP1P30622 1438 aa13.38□□□□□ -0.27
CLTCL1-208ENST00000615606 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
CLTCL1-208ENST00000615606 MTUS2Q5JR59 1369 aa13.37□□□□□ -0.27
CLTCL1-208ENST00000615606 BCANQ96GW7 911 aa13.34□□□□□ -0.27
CLTCL1-208ENST00000615606 CCDC88BA6NC98 1476 aa13.33□□□□□ -0.28
CLTCL1-208ENST00000615606 TSPY4P0CV99 314 aa13.31□□□□□ -0.28
CLTCL1-208ENST00000615606 TSPY10P0CW01 314 aa13.31□□□□□ -0.28
CLTCL1-208ENST00000615606 CEP164Q9UPV0 1460 aa13.31□□□□□ -0.28
CLTCL1-208ENST00000615606 PLEKHD1A6NEE1 506 aa13.3□□□□□ -0.28
CLTCL1-208ENST00000615606 TOP2AP11388 1531 aaKnown RBP13.28□□□□□ -0.28
CLTCL1-208ENST00000615606 CUX2O14529 1486 aa13.27□□□□□ -0.29
CLTCL1-208ENST00000615606 ATAD2BQ9ULI0 1458 aa13.26□□□□□ -0.29
CLTCL1-208ENST00000615606 STAG3Q9UJ98 1225 aa13.25□□□□□ -0.29
CLTCL1-208ENST00000615606 CADPSQ9ULU8 1353 aa13.25□□□□□ -0.29
CLTCL1-208ENST00000615606 CEP162Q5TB80 1403 aa13.24□□□□□ -0.29
CLTCL1-208ENST00000615606 KCNH8Q96L42 1107 aa13.24□□□□□ -0.29
CLTCL1-208ENST00000615606 TNIKQ9UKE5 1360 aa13.24□□□□□ -0.29
CLTCL1-208ENST00000615606 CHIC2Q9UKJ5 165 aa13.23□□□□□ -0.29
CLTCL1-208ENST00000615606 DIEXFQ68CQ4 756 aaKnown RBP13.23□□□□□ -0.29
CLTCL1-208ENST00000615606 CARMIL1Q5VZK9 1371 aa13.23□□□□□ -0.29
CLTCL1-208ENST00000615606 SMARCA4P51532 1647 aa13.22□□□□□ -0.29
CLTCL1-208ENST00000615606 CHGAP10645 457 aaKnown RBP13.22□□□□□ -0.29
CLTCL1-208ENST00000615606 WIZO95785 1651 aa13.21□□□□□ -0.29
CLTCL1-208ENST00000615606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.19□□□□□ -0.3
CLTCL1-208ENST00000615606 SOGA1O94964 1423 aa13.19□□□□□ -0.3
CLTCL1-208ENST00000615606 TONSLQ96HA7 1378 aa13.18□□□□□ -0.3
CLTCL1-208ENST00000615606 ANP32CO43423 234 aa13.17□□□□□ -0.3
CLTCL1-208ENST00000615606 PLPPR3Q6T4P5 718 aa13.16□□□□□ -0.3
CLTCL1-208ENST00000615606 EIF4G1Q04637 1599 aaKnown RBP13.15□□□□□ -0.31
CLTCL1-208ENST00000615606 ACIN1Q9UKV3 1341 aaKnown RBP13.14□□□□□ -0.31
CLTCL1-208ENST00000615606 CFDP1Q9UEE9 299 aaPredicted RBP13.13□□□□□ -0.31
CLTCL1-208ENST00000615606 FHAD1B1AJZ9 1412 aa13.13□□□□□ -0.31
CLTCL1-208ENST00000615606 ZNF316A6NFI3 1004 aaPredicted RBP13.12□□□□□ -0.31
CLTCL1-208ENST00000615606 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms