RNA–Protein interactions for RNA: ENST00000617103.4

CLTCL1-209, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,859 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-209ENST00000617103 DCAF8L2P0C7V8 631 aa17.72■□□□□ 0.43
CLTCL1-209ENST00000617103 SUPT5HO00267 1087 aaKnown RBP17.33■□□□□ 0.36
CLTCL1-209ENST00000617103 PELP1Q8IZL8 1130 aaKnown RBP17.09■□□□□ 0.33
CLTCL1-209ENST00000617103 NISCHQ9Y2I1 1504 aa16.94■□□□□ 0.3
CLTCL1-209ENST00000617103 SHROOM4Q9ULL8 1493 aa16.83■□□□□ 0.28
CLTCL1-209ENST00000617103 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
CLTCL1-209ENST00000617103 PCGF6Q9BYE7 350 aa16.67■□□□□ 0.26
CLTCL1-209ENST00000617103 CENPBP07199 599 aaPredicted RBP16.56■□□□□ 0.24
CLTCL1-209ENST00000617103 MYT1Q01538 1121 aa16.53■□□□□ 0.24
CLTCL1-209ENST00000617103 ZEB1P37275 1124 aaPredicted RBP16.5■□□□□ 0.23
CLTCL1-209ENST00000617103 APLP2Q06481 763 aa16.46■□□□□ 0.23
CLTCL1-209ENST00000617103 ERICH6Q7L0X2 663 aa16.34■□□□□ 0.21
CLTCL1-209ENST00000617103 FAM9AQ8IZU1 332 aaPredicted RBP16.32■□□□□ 0.2
CLTCL1-209ENST00000617103 CCER1Q8TC90 406 aaPredicted RBP16.29■□□□□ 0.2
CLTCL1-209ENST00000617103 TTBK1Q5TCY1 1321 aaPredicted RBP16.21■□□□□ 0.19
CLTCL1-209ENST00000617103 HRCP23327 699 aa16.07■□□□□ 0.16
CLTCL1-209ENST00000617103 TRIM41Q8WV44 630 aa16.04■□□□□ 0.16
CLTCL1-209ENST00000617103 NEFLP07196 543 aa16.03■□□□□ 0.16
CLTCL1-209ENST00000617103 YTHDC1Q96MU7 727 aaKnown RBP16.02■□□□□ 0.15
CLTCL1-209ENST00000617103 TRIM26Q12899 539 aaPredicted RBP15.94■□□□□ 0.14
CLTCL1-209ENST00000617103 RANGAP1P46060 587 aaPredicted RBP15.82■□□□□ 0.12
CLTCL1-209ENST00000617103 UBTFP17480 764 aaKnown RBP15.79■□□□□ 0.12
CLTCL1-209ENST00000617103 PPARGC1BQ86YN6 1023 aaKnown RBP15.7■□□□□ 0.1
CLTCL1-209ENST00000617103 ATP1B4Q9UN42 357 aaPredicted RBP15.65■□□□□ 0.1
CLTCL1-209ENST00000617103 CHIC1Q5VXU3 224 aa15.56■□□□□ 0.08
CLTCL1-209ENST00000617103 LOC105371045A0A1W2PR82 267 aa15.55■□□□□ 0.08
CLTCL1-209ENST00000617103 DAXXQ9UER7 740 aaPredicted RBP15.51■□□□□ 0.07
CLTCL1-209ENST00000617103 DIEXFQ68CQ4 756 aaKnown RBP15.49■□□□□ 0.07
CLTCL1-209ENST00000617103 HNRNPUL2Q1KMD3 747 aaKnown RBP15.38■□□□□ 0.05
CLTCL1-209ENST00000617103 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.37■□□□□ 0.05
CLTCL1-209ENST00000617103 GTF3C3Q9Y5Q9 886 aa15.37■□□□□ 0.05
CLTCL1-209ENST00000617103 RTL5Q5HYW3 569 aaPredicted RBP15.36■□□□□ 0.05
CLTCL1-209ENST00000617103 ITGAEP38570 1179 aa15.33■□□□□ 0.04
CLTCL1-209ENST00000617103 POLR3GLQ9BT43 218 aa15.24■□□□□ 0.03
CLTCL1-209ENST00000617103 ACIN1Q9UKV3 1341 aaKnown RBP15.18■□□□□ 0.02
CLTCL1-209ENST00000617103 ZNF316A6NFI3 1004 aaPredicted RBP15.16■□□□□ 0.02
CLTCL1-209ENST00000617103 BCANQ96GW7 911 aa15.13■□□□□ 0.01
CLTCL1-209ENST00000617103 CNGB1Q14028 1251 aaPredicted RBP15.12■□□□□ 0.01
CLTCL1-209ENST00000617103 CDK11AQ9UQ88 783 aaPredicted RBP15.08■□□□□ 0.01
CLTCL1-209ENST00000617103 CLSPNQ9HAW4 1339 aa15.07■□□□□ 0
CLTCL1-209ENST00000617103 ANP32CO43423 234 aa14.99□□□□□ -0.01
CLTCL1-209ENST00000617103 NEUROD1Q13562 356 aa14.92□□□□□ -0.02
CLTCL1-209ENST00000617103 FAM50AQ14320 339 aaKnown RBP14.91□□□□□ -0.02
CLTCL1-209ENST00000617103 MYT1LQ9UL68 1186 aa14.85□□□□□ -0.03
CLTCL1-209ENST00000617103 ANP32AP39687 249 aaKnown RBP14.83□□□□□ -0.03
CLTCL1-209ENST00000617103 TRIM52Q96A61 297 aa14.82□□□□□ -0.04
CLTCL1-209ENST00000617103 SLC4A1APQ9BWU0 796 aaKnown RBP14.78□□□□□ -0.04
CLTCL1-209ENST00000617103 SCAF1Q9H7N4 1312 aaKnown RBP14.76□□□□□ -0.05
CLTCL1-209ENST00000617103 FKBP8Q14318 412 aa14.75□□□□□ -0.05
CLTCL1-209ENST00000617103 EIF5BO60841 1220 aaKnown RBP14.71□□□□□ -0.05
CLTCL1-209ENST00000617103 DCAF1Q9Y4B6 1507 aa14.71□□□□□ -0.06
CLTCL1-209ENST00000617103 ZNF326Q5BKZ1 582 aaKnown RBP14.66□□□□□ -0.06
CLTCL1-209ENST00000617103 NPM2Q86SE8 214 aaKnown RBP14.65□□□□□ -0.06
CLTCL1-209ENST00000617103 ZBTB47Q9UFB7 747 aaPredicted RBP14.64□□□□□ -0.07
CLTCL1-209ENST00000617103 CANXP27824 592 aaKnown RBP14.6□□□□□ -0.07
CLTCL1-209ENST00000617103 CSRNP3Q8WYN3 585 aa14.59□□□□□ -0.07
CLTCL1-209ENST00000617103 GLIPR1L2Q4G1C9 344 aa14.59□□□□□ -0.07
CLTCL1-209ENST00000617103 HNRNPUQ00839 825 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLTCL1-209ENST00000617103 DDX10Q13206 875 aaKnown RBP14.53□□□□□ -0.08
CLTCL1-209ENST00000617103 ANP32BQ92688 251 aaKnown RBP14.52□□□□□ -0.09
CLTCL1-209ENST00000617103 NBR1Q14596 966 aa14.51□□□□□ -0.09
CLTCL1-209ENST00000617103 MIER1Q8N108 512 aa14.5□□□□□ -0.09
CLTCL1-209ENST00000617103 CCDC136Q96JN2 1154 aa14.47□□□□□ -0.09
CLTCL1-209ENST00000617103 TONSLQ96HA7 1378 aa14.46□□□□□ -0.09
CLTCL1-209ENST00000617103 ANP32EQ9BTT0 268 aa14.45□□□□□ -0.1
CLTCL1-209ENST00000617103 FAM9BQ8IZU0 186 aa14.44□□□□□ -0.1
CLTCL1-209ENST00000617103 UPF2Q9HAU5 1272 aaKnown RBP14.44□□□□□ -0.1
CLTCL1-209ENST00000617103 BCL11AQ9H165 835 aa14.42□□□□□ -0.1
CLTCL1-209ENST00000617103 NEFMP07197 916 aa14.41□□□□□ -0.1
CLTCL1-209ENST00000617103 HSP90AA1P07900 732 aaKnown RBP14.4□□□□□ -0.1
CLTCL1-209ENST00000617103 P3H3Q8IVL6 736 aa14.36□□□□□ -0.11
CLTCL1-209ENST00000617103 ABCC9O60706 1549 aa14.35□□□□□ -0.11
CLTCL1-209ENST00000617103 TMC1Q8TDI8 760 aa14.32□□□□□ -0.12
CLTCL1-209ENST00000617103 MRS2Q9HD23 443 aa14.32□□□□□ -0.12
CLTCL1-209ENST00000617103 IRX6P78412 446 aaPredicted RBP14.31□□□□□ -0.12
CLTCL1-209ENST00000617103 PABPN1Q86U42 306 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLTCL1-209ENST00000617103 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.3□□□□□ -0.12
CLTCL1-209ENST00000617103 SALL2Q9Y467 1007 aaPredicted RBP14.29□□□□□ -0.12
CLTCL1-209ENST00000617103 ARXQ96QS3 562 aa14.26□□□□□ -0.13
CLTCL1-209ENST00000617103 SLC24A1O60721 1099 aa14.24□□□□□ -0.13
CLTCL1-209ENST00000617103 DDRGK1Q96HY6 314 aa14.24□□□□□ -0.13
CLTCL1-209ENST00000617103 ARID3CA6NKF2 412 aa14.22□□□□□ -0.13
CLTCL1-209ENST00000617103 ZNF777Q9ULD5 760 aaPredicted RBP14.22□□□□□ -0.13
CLTCL1-209ENST00000617103 MYO15BQ96JP2 1530 aa14.18□□□□□ -0.14
CLTCL1-209ENST00000617103 HIRIP3Q9BW71 556 aaPredicted RBP14.18□□□□□ -0.14
CLTCL1-209ENST00000617103 PPM1GO15355 546 aaPredicted RBP14.17□□□□□ -0.14
CLTCL1-209ENST00000617103 CCDC180Q9P1Z9 1646 aa14.16□□□□□ -0.14
CLTCL1-209ENST00000617103 BECN1Q14457 450 aa14.16□□□□□ -0.14
CLTCL1-209ENST00000617103 WDR43Q15061 677 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLTCL1-209ENST00000617103 SUPT16HQ9Y5B9 1047 aaKnown RBP14.16□□□□□ -0.14
CLTCL1-209ENST00000617103 EIF4G2P78344 907 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLTCL1-209ENST00000617103 ERICH6BQ5W0A0 696 aa14.15□□□□□ -0.14
CLTCL1-209ENST00000617103 TRIM44Q96DX7 344 aaPredicted RBP14.15□□□□□ -0.14
CLTCL1-209ENST00000617103 FBLN2P98095 1184 aa14.14□□□□□ -0.15
CLTCL1-209ENST00000617103 PPP4R2Q9NY27 417 aa14.11□□□□□ -0.15
CLTCL1-209ENST00000617103 CHIC2Q9UKJ5 165 aa14.1□□□□□ -0.15
CLTCL1-209ENST00000617103 NOP58Q9Y2X3 529 aaKnown RBP14.09□□□□□ -0.15
CLTCL1-209ENST00000617103 CLIP1P30622 1438 aa14.09□□□□□ -0.15
CLTCL1-209ENST00000617103 ZCCHC6Q5VYS8 1495 aaKnown RBP14.06□□□□□ -0.16
CLTCL1-209ENST00000617103 GOLGA6L22H0YM25 854 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms