RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 NISCHQ9Y2I1 1504 aa33.79■■■■□ 3
PNKP-228ENST00000637325 CCDC180Q9P1Z9 1646 aa30.19■■■□□ 2.42
PNKP-228ENST00000637325 ABCC9O60706 1549 aa29.79■■■□□ 2.36
PNKP-228ENST00000637325 RB1CC1Q8TDY2 1594 aa28.54■■■□□ 2.16
PNKP-228ENST00000637325 DCAF8L2P0C7V8 631 aa28.47■■■□□ 2.15
PNKP-228ENST00000637325 NACADO15069 1562 aa28.43■■■□□ 2.14
PNKP-228ENST00000637325 MYO15BQ96JP2 1530 aa28.12■■■□□ 2.09
PNKP-228ENST00000637325 ZCCHC6Q5VYS8 1495 aaKnown RBP28.07■■■□□ 2.08
PNKP-228ENST00000637325 UNC13AQ9UPW8 1703 aa27.95■■■□□ 2.07
PNKP-228ENST00000637325 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
PNKP-228ENST00000637325 PABPN1Q86U42 306 aaKnown RBP eCLIP27.8■■■□□ 2.04
PNKP-228ENST00000637325 BICRAQ9NZM4 1560 aa27.64■■■□□ 2.01
PNKP-228ENST00000637325 SCRIBQ14160 1630 aa27.55■■■□□ 2
PNKP-228ENST00000637325 DNAJC5BQ9UF47 199 aa27.52■■■□□ 2
PNKP-228ENST00000637325 SHROOM4Q9ULL8 1493 aa27.31■■□□□ 1.96
PNKP-228ENST00000637325 EIF4G1Q04637 1599 aaKnown RBP26.96■■□□□ 1.91
PNKP-228ENST00000637325 CC2D2AQ9P2K1 1620 aa26.94■■□□□ 1.9
PNKP-228ENST00000637325 CECR2Q9BXF3 1484 aa26.78■■□□□ 1.88
PNKP-228ENST00000637325 SMARCA4P51532 1647 aa26.29■■□□□ 1.8
PNKP-228ENST00000637325 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
PNKP-228ENST00000637325 NCAPD3P42695 1498 aa26.19■■□□□ 1.78
PNKP-228ENST00000637325 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
PNKP-228ENST00000637325 SMARCA2P51531 1590 aa26.18■■□□□ 1.78
PNKP-228ENST00000637325 HMGXB3Q12766 1538 aa26.06■■□□□ 1.76
PNKP-228ENST00000637325 MROH2BQ7Z745 1585 aa26.04■■□□□ 1.76
PNKP-228ENST00000637325 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
PNKP-228ENST00000637325 BAZ1BQ9UIG0 1483 aaKnown RBP25.99■■□□□ 1.75
PNKP-228ENST00000637325 WIZO95785 1651 aa25.8■■□□□ 1.72
PNKP-228ENST00000637325 ERCC6Q03468 1493 aa25.72■■□□□ 1.71
PNKP-228ENST00000637325 NESP48681 1621 aa25.68■■□□□ 1.7
PNKP-228ENST00000637325 RSF1Q96T23 1441 aaPredicted RBP25.63■■□□□ 1.69
PNKP-228ENST00000637325 LAMC3Q9Y6N6 1575 aa25.59■■□□□ 1.69
PNKP-228ENST00000637325 CUX2O14529 1486 aa25.49■■□□□ 1.67
PNKP-228ENST00000637325 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
PNKP-228ENST00000637325 CADPSQ9ULU8 1353 aa25.45■■□□□ 1.67
PNKP-228ENST00000637325 PDS5BQ9NTI5 1447 aa25.44■■□□□ 1.66
PNKP-228ENST00000637325 KIF21AQ7Z4S6 1674 aa25.43■■□□□ 1.66
PNKP-228ENST00000637325 THOC2Q8NI27 1593 aaKnown RBP25.34■■□□□ 1.65
PNKP-228ENST00000637325 CFTRP13569 1480 aa25.22■■□□□ 1.63
PNKP-228ENST00000637325 CCDC88BA6NC98 1476 aa25.17■■□□□ 1.62
PNKP-228ENST00000637325 FANCD2Q9BXW9 1451 aa25.17■■□□□ 1.62
PNKP-228ENST00000637325 MRC2Q9UBG0 1479 aa25.17■■□□□ 1.62
PNKP-228ENST00000637325 CEP164Q9UPV0 1460 aa25.17■■□□□ 1.62
PNKP-228ENST00000637325 PRDM2Q13029 1718 aa25.14■■□□□ 1.61
PNKP-228ENST00000637325 WDR62O43379 1518 aa25.08■■□□□ 1.61
PNKP-228ENST00000637325 DNAJC5Q9H3Z4 198 aa25.01■■□□□ 1.59
PNKP-228ENST00000637325 URB2Q14146 1524 aaKnown RBP24.91■■□□□ 1.58
PNKP-228ENST00000637325 SUPT5HO00267 1087 aaKnown RBP24.91■■□□□ 1.58
PNKP-228ENST00000637325 TOPBP1Q92547 1522 aa24.74■■□□□ 1.55
PNKP-228ENST00000637325 ABCC8Q09428 1581 aa24.74■■□□□ 1.55
PNKP-228ENST00000637325 DNMBPQ6XZF7 1577 aa24.7■■□□□ 1.54
PNKP-228ENST00000637325 IFT140Q96RY7 1462 aa24.64■■□□□ 1.54
PNKP-228ENST00000637325 ZNF608Q9ULD9 1512 aaPredicted RBP24.55■■□□□ 1.52
PNKP-228ENST00000637325 POLA1P09884 1462 aaPredicted RBP24.5■■□□□ 1.51
PNKP-228ENST00000637325 TARBP1Q13395 1621 aaKnown RBP24.48■■□□□ 1.51
PNKP-228ENST00000637325 EIF4G3O43432 1585 aaKnown RBP24.46■■□□□ 1.51
PNKP-228ENST00000637325 CUX1P39880 1505 aa24.45■■□□□ 1.5
PNKP-228ENST00000637325 OSCARQ8IYS5 282 aa24.44■■□□□ 1.5
PNKP-228ENST00000637325 SOGA1O94964 1423 aa24.43■■□□□ 1.5
PNKP-228ENST00000637325 FGD5Q6ZNL6 1462 aa24.42■■□□□ 1.5
PNKP-228ENST00000637325 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
PNKP-228ENST00000637325 AQRO60306 1485 aaKnown RBP eCLIP24.39■■□□□ 1.57e-6■■□□□ 12.2
PNKP-228ENST00000637325 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
PNKP-228ENST00000637325 WDR97A6NE52 1622 aa24.28■■□□□ 1.48
PNKP-228ENST00000637325 CHD1O14646 1710 aa24.26■■□□□ 1.47
PNKP-228ENST00000637325 FBLN2P98095 1184 aa24.23■■□□□ 1.47
PNKP-228ENST00000637325 WRNQ14191 1432 aaPredicted RBP eCLIP24.21■■□□□ 1.47
PNKP-228ENST00000637325 BIVM-ERCC5R4GMW8 1640 aa24.2■■□□□ 1.46
PNKP-228ENST00000637325 TOP2BQ02880 1626 aa24.18■■□□□ 1.46
PNKP-228ENST00000637325 SYNJ1O43426 1573 aa24.16■■□□□ 1.46
PNKP-228ENST00000637325 GRIN2BQ13224 1484 aa24.16■■□□□ 1.46
PNKP-228ENST00000637325 SNAPC4Q5SXM2 1469 aa24.16■■□□□ 1.46
PNKP-228ENST00000637325 TRIM41Q8WV44 630 aa24.16■■□□□ 1.46
PNKP-228ENST00000637325 ABCA10Q8WWZ4 1543 aa24.15■■□□□ 1.46
PNKP-228ENST00000637325 PBRM1Q86U86 1689 aa24.15■■□□□ 1.46
PNKP-228ENST00000637325 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
PNKP-228ENST00000637325 MAGI1Q96QZ7 1491 aaPredicted RBP24.12■■□□□ 1.45
PNKP-228ENST00000637325 CHMP7Q8WUX9 453 aaPredicted RBP24.1■■□□□ 1.45
PNKP-228ENST00000637325 ABCA5Q8WWZ7 1642 aa24.08■■□□□ 1.45
PNKP-228ENST00000637325 RIMBP3CA6NJZ7 1639 aa24.06■■□□□ 1.44
PNKP-228ENST00000637325 RIMBP3BA6NNM3 1639 aa24.06■■□□□ 1.44
PNKP-228ENST00000637325 RIMBP3Q9UFD9 1639 aa24.06■■□□□ 1.44
PNKP-228ENST00000637325 SYNJ2O15056 1496 aa24.02■■□□□ 1.44
PNKP-228ENST00000637325 ARHGEF11O15085 1522 aa24■■□□□ 1.43
PNKP-228ENST00000637325 CLASP1Q7Z460 1538 aa23.89■■□□□ 1.42
PNKP-228ENST00000637325 ADAMTS12P58397 1594 aa23.88■■□□□ 1.41
PNKP-228ENST00000637325 ERICH3Q5RHP9 1530 aa23.87■■□□□ 1.41
PNKP-228ENST00000637325 CYB5RLQ6IPT4 315 aa23.85■■□□□ 1.41
PNKP-228ENST00000637325 FHAD1B1AJZ9 1412 aa23.84■■□□□ 1.41
PNKP-228ENST00000637325 GRIN2AQ12879 1464 aa23.83■■□□□ 1.41
PNKP-228ENST00000637325 ARAP1Q96P48 1450 aa23.78■■□□□ 1.4
PNKP-228ENST00000637325 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
PNKP-228ENST00000637325 CEP170Q5SW79 1584 aa23.73■■□□□ 1.39
PNKP-228ENST00000637325 NUP160Q12769 1436 aa23.71■■□□□ 1.39
PNKP-228ENST00000637325 IGF1RP08069 1367 aa23.65■■□□□ 1.38
PNKP-228ENST00000637325 CUL7Q14999 1698 aa23.64■■□□□ 1.38
PNKP-228ENST00000637325 SHROOM2Q13796 1616 aa23.59■■□□□ 1.37
PNKP-228ENST00000637325 ERCC6L2Q5T890 1561 aa23.57■■□□□ 1.36
PNKP-228ENST00000637325 CARMIL1Q5VZK9 1371 aa23.53■■□□□ 1.36
PNKP-228ENST00000637325 JPH4Q96JJ6 628 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms