RNA–Protein interactions for RNA: ENST00000508657.5

KLHL3-209, Transcript of kelch like family member 3, humanhuman

TSL 1 (best) BASIC

Gene KLHL3, Length 6,981 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-209ENST00000508657 DCAF8L2P0C7V8 631 aa16.47■□□□□ 0.23
KLHL3-209ENST00000508657 EHMT2Q96KQ7 1210 aa15.22■□□□□ 0.03
KLHL3-209ENST00000508657 SUPT5HO00267 1087 aaKnown RBP14.86□□□□□ -0.03
KLHL3-209ENST00000508657 SHROOM4Q9ULL8 1493 aa14.63□□□□□ -0.07
KLHL3-209ENST00000508657 TTBK1Q5TCY1 1321 aaPredicted RBP14.56□□□□□ -0.08
KLHL3-209ENST00000508657 RANGAP1P46060 587 aaPredicted RBP14.54□□□□□ -0.08
KLHL3-209ENST00000508657 FAM9AQ8IZU1 332 aaPredicted RBP14.44□□□□□ -0.1
KLHL3-209ENST00000508657 ATP1B4Q9UN42 357 aaPredicted RBP14.43□□□□□ -0.1
KLHL3-209ENST00000508657 APLP2Q06481 763 aa14.35□□□□□ -0.11
KLHL3-209ENST00000508657 CHIC1Q5VXU3 224 aa14.2□□□□□ -0.14
KLHL3-209ENST00000508657 MYT1LQ9UL68 1186 aa14.19□□□□□ -0.14
KLHL3-209ENST00000508657 PELP1Q8IZL8 1130 aaKnown RBP13.88□□□□□ -0.19
KLHL3-209ENST00000508657 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.87□□□□□ -0.19
KLHL3-209ENST00000508657 HNRNPUL2Q1KMD3 747 aaKnown RBP13.87□□□□□ -0.19
KLHL3-209ENST00000508657 PCGF6Q9BYE7 350 aa13.79□□□□□ -0.2
KLHL3-209ENST00000508657 CNGB1Q14028 1251 aaPredicted RBP13.77□□□□□ -0.2
KLHL3-209ENST00000508657 POLR3GLQ9BT43 218 aa13.77□□□□□ -0.21
KLHL3-209ENST00000508657 SLC4A1APQ9BWU0 796 aaKnown RBP13.74□□□□□ -0.21
KLHL3-209ENST00000508657 UBTFP17480 764 aaKnown RBP13.71□□□□□ -0.22
KLHL3-209ENST00000508657 ERICH6Q7L0X2 663 aa13.69□□□□□ -0.22
KLHL3-209ENST00000508657 PPARGC1BQ86YN6 1023 aaKnown RBP13.61□□□□□ -0.23
KLHL3-209ENST00000508657 PLPPR3Q6T4P5 718 aa13.59□□□□□ -0.23
KLHL3-209ENST00000508657 ITGAEP38570 1179 aa13.58□□□□□ -0.23
KLHL3-209ENST00000508657 NISCHQ9Y2I1 1504 aa13.55□□□□□ -0.24
KLHL3-209ENST00000508657 TRIM41Q8WV44 630 aa13.52□□□□□ -0.25
KLHL3-209ENST00000508657 CCER1Q8TC90 406 aaPredicted RBP13.49□□□□□ -0.25
KLHL3-209ENST00000508657 YTHDC1Q96MU7 727 aaKnown RBP13.47□□□□□ -0.25
KLHL3-209ENST00000508657 SLC24A1O60721 1099 aa13.44□□□□□ -0.26
KLHL3-209ENST00000508657 BCANQ96GW7 911 aa13.4□□□□□ -0.26
KLHL3-209ENST00000508657 FBLN2P98095 1184 aa13.37□□□□□ -0.27
KLHL3-209ENST00000508657 BCL11AQ9H165 835 aa13.35□□□□□ -0.27
KLHL3-209ENST00000508657 MYT1Q01538 1121 aa13.33□□□□□ -0.28
KLHL3-209ENST00000508657 NEFLP07196 543 aa13.28□□□□□ -0.28
KLHL3-209ENST00000508657 DAXXQ9UER7 740 aaPredicted RBP13.19□□□□□ -0.3
KLHL3-209ENST00000508657 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
KLHL3-209ENST00000508657 ARID3CA6NKF2 412 aa13.15□□□□□ -0.3
KLHL3-209ENST00000508657 A0A0G2JS52 829 aa13.11□□□□□ -0.31
KLHL3-209ENST00000508657 CENPBP07199 599 aaPredicted RBP13.11□□□□□ -0.31
KLHL3-209ENST00000508657 PLEKHG5O94827 1062 aa13.09□□□□□ -0.31
KLHL3-209ENST00000508657 CLSPNQ9HAW4 1339 aa13.07□□□□□ -0.32
KLHL3-209ENST00000508657 ZNF326Q5BKZ1 582 aaKnown RBP13.07□□□□□ -0.32
KLHL3-209ENST00000508657 SCAF1Q9H7N4 1312 aaKnown RBP13.06□□□□□ -0.32
KLHL3-209ENST00000508657 TRIM52Q96A61 297 aa13.05□□□□□ -0.32
KLHL3-209ENST00000508657 FAM50AQ14320 339 aaKnown RBP13.03□□□□□ -0.32
KLHL3-209ENST00000508657 ESF1Q9H501 851 aaKnown RBP13.02□□□□□ -0.33
KLHL3-209ENST00000508657 SENP3Q9H4L4 574 aaPredicted RBP12.99□□□□□ -0.33
KLHL3-209ENST00000508657 STAG3Q9UJ98 1225 aa12.91□□□□□ -0.34
KLHL3-209ENST00000508657 CHGAP10645 457 aaKnown RBP12.89□□□□□ -0.35
KLHL3-209ENST00000508657 NEUROD1Q13562 356 aa12.89□□□□□ -0.35
KLHL3-209ENST00000508657 ZBTB47Q9UFB7 747 aaPredicted RBP12.87□□□□□ -0.35
KLHL3-209ENST00000508657 ZNF777Q9ULD5 760 aaPredicted RBP12.86□□□□□ -0.35
KLHL3-209ENST00000508657 ZBTB7CA1YPR0 619 aa12.86□□□□□ -0.35
KLHL3-209ENST00000508657 ABCC9O60706 1549 aa12.86□□□□□ -0.35
KLHL3-209ENST00000508657 ZNF316A6NFI3 1004 aaPredicted RBP12.85□□□□□ -0.35
KLHL3-209ENST00000508657 P3H3Q8IVL6 736 aa12.84□□□□□ -0.35
KLHL3-209ENST00000508657 ZEB1P37275 1124 aaPredicted RBP12.8□□□□□ -0.36
KLHL3-209ENST00000508657 CANXP27824 592 aaKnown RBP12.75□□□□□ -0.37
KLHL3-209ENST00000508657 NPM1P06748 294 aaKnown RBP eCLIP12.74□□□□□ -0.37
KLHL3-209ENST00000508657 NEFMP07197 916 aa12.74□□□□□ -0.37
KLHL3-209ENST00000508657 LOC105371045A0A1W2PR82 267 aa12.73□□□□□ -0.37
KLHL3-209ENST00000508657 C14orf37Q86TY3 774 aa12.7□□□□□ -0.38
KLHL3-209ENST00000508657 HAP1P54257 671 aaPredicted RBP12.65□□□□□ -0.38
KLHL3-209ENST00000508657 TRHP20396 242 aaPredicted RBP12.64□□□□□ -0.39
KLHL3-209ENST00000508657 TULP1O00294 542 aaPredicted RBP12.62□□□□□ -0.39
KLHL3-209ENST00000508657 ARXQ96QS3 562 aa12.62□□□□□ -0.39
KLHL3-209ENST00000508657 ARID4BQ4LE39 1312 aaPredicted RBP12.62□□□□□ -0.39
KLHL3-209ENST00000508657 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.6□□□□□ -0.39
KLHL3-209ENST00000508657 NPM2Q86SE8 214 aaKnown RBP12.53□□□□□ -0.4
KLHL3-209ENST00000508657 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
KLHL3-209ENST00000508657 RTL5Q5HYW3 569 aaPredicted RBP12.49□□□□□ -0.41
KLHL3-209ENST00000508657 LMOD2Q6P5Q4 547 aa12.48□□□□□ -0.41
KLHL3-209ENST00000508657 TRIM26Q12899 539 aaPredicted RBP12.48□□□□□ -0.41
KLHL3-209ENST00000508657 SALL2Q9Y467 1007 aaPredicted RBP12.47□□□□□ -0.41
KLHL3-209ENST00000508657 NPHP1O15259 732 aa12.47□□□□□ -0.41
KLHL3-209ENST00000508657 KCNH8Q96L42 1107 aa12.44□□□□□ -0.42
KLHL3-209ENST00000508657 PPP1R15AO75807 674 aaPredicted RBP12.43□□□□□ -0.42
KLHL3-209ENST00000508657 TAOK2Q9UL54 1235 aa12.39□□□□□ -0.43
KLHL3-209ENST00000508657 ANP32CO43423 234 aa12.36□□□□□ -0.43
KLHL3-209ENST00000508657 HRCP23327 699 aa12.35□□□□□ -0.43
KLHL3-209ENST00000508657 KDM2AQ9Y2K7 1162 aa12.35□□□□□ -0.43
KLHL3-209ENST00000508657 CHIC2Q9UKJ5 165 aa12.35□□□□□ -0.43
KLHL3-209ENST00000508657 CDK11AQ9UQ88 783 aaPredicted RBP12.32□□□□□ -0.44
KLHL3-209ENST00000508657 CHMP7Q8WUX9 453 aaPredicted RBP12.32□□□□□ -0.44
KLHL3-209ENST00000508657 MLECQ14165 292 aa12.31□□□□□ -0.44
KLHL3-209ENST00000508657 AEBP2Q6ZN18 517 aaPredicted RBP12.31□□□□□ -0.44
KLHL3-209ENST00000508657 HSP90AA1P07900 732 aaKnown RBP12.31□□□□□ -0.44
KLHL3-209ENST00000508657 CDK11BP21127 795 aaKnown RBP12.29□□□□□ -0.44
KLHL3-209ENST00000508657 PPM1GO15355 546 aaPredicted RBP12.27□□□□□ -0.45
KLHL3-209ENST00000508657 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.25□□□□□ -0.45
KLHL3-209ENST00000508657 DIEXFQ68CQ4 756 aaKnown RBP12.24□□□□□ -0.45
KLHL3-209ENST00000508657 TPRNQ4KMQ1 711 aa12.24□□□□□ -0.45
KLHL3-209ENST00000508657 TMC1Q8TDI8 760 aa12.22□□□□□ -0.45
KLHL3-209ENST00000508657 SOX12O15370 315 aa12.2□□□□□ -0.46
KLHL3-209ENST00000508657 SENP3-EIF4A1A0A087X0R7 540 aa12.2□□□□□ -0.46
KLHL3-209ENST00000508657 CCDC9Q9Y3X0 531 aaKnown RBP12.2□□□□□ -0.46
KLHL3-209ENST00000508657 FAM9BQ8IZU0 186 aa12.16□□□□□ -0.46
KLHL3-209ENST00000508657 CLSTN1O94985 981 aa12.16□□□□□ -0.46
KLHL3-209ENST00000508657 ISY1Q9ULR0 285 aaKnown RBP12.15□□□□□ -0.46
KLHL3-209ENST00000508657 AMER1Q5JTC6 1135 aaPredicted RBP12.15□□□□□ -0.46
KLHL3-209ENST00000508657 RGL3Q3MIN7 710 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms