RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 NISCHQ9Y2I1 1504 aa37.11■■■■□ 3.53
PNKP-202ENST00000593706 CCDC180Q9P1Z9 1646 aa33.52■■■□□ 2.96
PNKP-202ENST00000593706 ABCC9O60706 1549 aa33.44■■■□□ 2.94
PNKP-202ENST00000593706 RB1CC1Q8TDY2 1594 aa31.87■■■□□ 2.69
PNKP-202ENST00000593706 NACADO15069 1562 aa31.59■■■□□ 2.65
PNKP-202ENST00000593706 UNC13AQ9UPW8 1703 aa31.32■■■□□ 2.6
PNKP-202ENST00000593706 DCAF8L2P0C7V8 631 aa31.29■■■□□ 2.6
PNKP-202ENST00000593706 DNAJC5BQ9UF47 199 aa31.26■■■□□ 2.59
PNKP-202ENST00000593706 MYO15BQ96JP2 1530 aa31.07■■■□□ 2.56
PNKP-202ENST00000593706 PABPN1Q86U42 306 aaKnown RBP eCLIP31.01■■■□□ 2.555e-6■■■■□ 22.2
PNKP-202ENST00000593706 BICRAQ9NZM4 1560 aa30.9■■■□□ 2.54
PNKP-202ENST00000593706 ZCCHC6Q5VYS8 1495 aaKnown RBP30.76■■■□□ 2.52
PNKP-202ENST00000593706 DCAF1Q9Y4B6 1507 aa30.65■■■□□ 2.5
PNKP-202ENST00000593706 SCRIBQ14160 1630 aa30.49■■■□□ 2.47
PNKP-202ENST00000593706 SHROOM4Q9ULL8 1493 aa30.48■■■□□ 2.47
PNKP-202ENST00000593706 CC2D2AQ9P2K1 1620 aa30.27■■■□□ 2.44
PNKP-202ENST00000593706 EIF4G1Q04637 1599 aaKnown RBP30.17■■■□□ 2.42
PNKP-202ENST00000593706 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
PNKP-202ENST00000593706 SMARCA4P51532 1647 aa29.06■■■□□ 2.24
PNKP-202ENST00000593706 NCAPD3P42695 1498 aa29.06■■■□□ 2.24
PNKP-202ENST00000593706 SMARCA2P51531 1590 aa29■■■□□ 2.23
PNKP-202ENST00000593706 ATAD2BQ9ULI0 1458 aa28.98■■■□□ 2.23
PNKP-202ENST00000593706 HMGXB3Q12766 1538 aa28.96■■■□□ 2.23
PNKP-202ENST00000593706 ERCC6Q03468 1493 aa28.92■■■□□ 2.22
PNKP-202ENST00000593706 BAZ1AQ9NRL2 1556 aaPredicted RBP28.87■■■□□ 2.21
PNKP-202ENST00000593706 CUX2O14529 1486 aa28.86■■■□□ 2.21
PNKP-202ENST00000593706 DNAJC5Q9H3Z4 198 aa28.8■■■□□ 2.2
PNKP-202ENST00000593706 BAZ1BQ9UIG0 1483 aaKnown RBP28.78■■■□□ 2.2
PNKP-202ENST00000593706 PEG3Q9GZU2 1588 aa28.73■■■□□ 2.19
PNKP-202ENST00000593706 NESP48681 1621 aa28.69■■■□□ 2.18
PNKP-202ENST00000593706 MROH2BQ7Z745 1585 aa28.59■■■□□ 2.17
PNKP-202ENST00000593706 LAMC3Q9Y6N6 1575 aa28.56■■■□□ 2.16
PNKP-202ENST00000593706 THOC2Q8NI27 1593 aaKnown RBP28.53■■■□□ 2.16
PNKP-202ENST00000593706 KIF21AQ7Z4S6 1674 aa28.51■■■□□ 2.16
PNKP-202ENST00000593706 WIZO95785 1651 aa28.35■■■□□ 2.13
PNKP-202ENST00000593706 PDS5BQ9NTI5 1447 aa28.3■■■□□ 2.12
PNKP-202ENST00000593706 CADPSQ9ULU8 1353 aa28.16■■■□□ 2.1
PNKP-202ENST00000593706 MRC2Q9UBG0 1479 aa28.11■■■□□ 2.09
PNKP-202ENST00000593706 WDR62O43379 1518 aa28.06■■■□□ 2.08
PNKP-202ENST00000593706 CEP164Q9UPV0 1460 aa28.01■■■□□ 2.07
PNKP-202ENST00000593706 TOP2AP11388 1531 aaKnown RBP27.95■■■□□ 2.06
PNKP-202ENST00000593706 FANCD2Q9BXW9 1451 aa27.92■■■□□ 2.06
PNKP-202ENST00000593706 RSF1Q96T23 1441 aaPredicted RBP27.92■■■□□ 2.06
PNKP-202ENST00000593706 PRDM2Q13029 1718 aa27.91■■■□□ 2.06
PNKP-202ENST00000593706 CFTRP13569 1480 aa27.86■■■□□ 2.05
PNKP-202ENST00000593706 URB2Q14146 1524 aaKnown RBP27.69■■■□□ 2.02
PNKP-202ENST00000593706 TRIM41Q8WV44 630 aa27.6■■■□□ 2.01
PNKP-202ENST00000593706 CCDC88BA6NC98 1476 aa27.54■■■□□ 2
PNKP-202ENST00000593706 OSCARQ8IYS5 282 aa27.42■■□□□ 1.98
PNKP-202ENST00000593706 IFT140Q96RY7 1462 aa27.39■■□□□ 1.98
PNKP-202ENST00000593706 TOPBP1Q92547 1522 aa27.39■■□□□ 1.98
PNKP-202ENST00000593706 ZNF608Q9ULD9 1512 aaPredicted RBP27.35■■□□□ 1.97
PNKP-202ENST00000593706 EIF4G3O43432 1585 aaKnown RBP27.34■■□□□ 1.97
PNKP-202ENST00000593706 DNMBPQ6XZF7 1577 aa27.34■■□□□ 1.97
PNKP-202ENST00000593706 ABCC8Q09428 1581 aa27.33■■□□□ 1.97
PNKP-202ENST00000593706 RIMBP3CA6NJZ7 1639 aa27.27■■□□□ 1.96
PNKP-202ENST00000593706 RIMBP3BA6NNM3 1639 aa27.27■■□□□ 1.96
PNKP-202ENST00000593706 RIMBP3Q9UFD9 1639 aa27.27■■□□□ 1.96
PNKP-202ENST00000593706 CHD1O14646 1710 aa27.22■■□□□ 1.95
PNKP-202ENST00000593706 TARBP1Q13395 1621 aaKnown RBP27.21■■□□□ 1.95
PNKP-202ENST00000593706 ARHGEF11O15085 1522 aa27.11■■□□□ 1.93
PNKP-202ENST00000593706 POLA1P09884 1462 aaPredicted RBP27.1■■□□□ 1.93
PNKP-202ENST00000593706 AQRO60306 1485 aaKnown RBP eCLIP27.06■■□□□ 1.926e-6■■■□□ 14.6
PNKP-202ENST00000593706 RAD54L2Q9Y4B4 1467 aa26.97■■□□□ 1.91
PNKP-202ENST00000593706 WDR97A6NE52 1622 aa26.96■■□□□ 1.91
PNKP-202ENST00000593706 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
PNKP-202ENST00000593706 SOGA1O94964 1423 aa26.92■■□□□ 1.9
PNKP-202ENST00000593706 FBLN2P98095 1184 aa26.91■■□□□ 1.9
PNKP-202ENST00000593706 CUX1P39880 1505 aa26.9■■□□□ 1.9
PNKP-202ENST00000593706 TDRD9Q8NDG6 1382 aaKnown RBP26.86■■□□□ 1.89
PNKP-202ENST00000593706 SNAPC4Q5SXM2 1469 aa26.86■■□□□ 1.89
PNKP-202ENST00000593706 PBRM1Q86U86 1689 aa26.85■■□□□ 1.89
PNKP-202ENST00000593706 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
PNKP-202ENST00000593706 CYB5RLQ6IPT4 315 aa26.8■■□□□ 1.88
PNKP-202ENST00000593706 MAGI1Q96QZ7 1491 aaPredicted RBP26.78■■□□□ 1.88
PNKP-202ENST00000593706 SYNJ1O43426 1573 aa26.78■■□□□ 1.88
PNKP-202ENST00000593706 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
PNKP-202ENST00000593706 GRIN2BQ13224 1484 aa26.74■■□□□ 1.87
PNKP-202ENST00000593706 SYNJ2O15056 1496 aa26.68■■□□□ 1.86
PNKP-202ENST00000593706 CHMP7Q8WUX9 453 aaPredicted RBP26.67■■□□□ 1.86
PNKP-202ENST00000593706 ABCA5Q8WWZ7 1642 aa26.66■■□□□ 1.86
PNKP-202ENST00000593706 GAPVD1Q14C86 1478 aa26.64■■□□□ 1.86
PNKP-202ENST00000593706 SUPT5HO00267 1087 aaKnown RBP26.61■■□□□ 1.85
PNKP-202ENST00000593706 ABCA10Q8WWZ4 1543 aa26.6■■□□□ 1.85
PNKP-202ENST00000593706 TRHP20396 242 aaPredicted RBP26.58■■□□□ 1.85
PNKP-202ENST00000593706 BIVM-ERCC5R4GMW8 1640 aa26.54■■□□□ 1.84
PNKP-202ENST00000593706 TOP2BQ02880 1626 aa26.49■■□□□ 1.83
PNKP-202ENST00000593706 ADAMTS12P58397 1594 aa26.47■■□□□ 1.83
PNKP-202ENST00000593706 WRNQ14191 1432 aaPredicted RBP eCLIP26.46■■□□□ 1.83
PNKP-202ENST00000593706 GRIN2AQ12879 1464 aa26.42■■□□□ 1.82
PNKP-202ENST00000593706 CEP170Q5SW79 1584 aa26.37■■□□□ 1.81
PNKP-202ENST00000593706 ERCC6L2Q5T890 1561 aa26.32■■□□□ 1.8
PNKP-202ENST00000593706 ERICH3Q5RHP9 1530 aa26.3■■□□□ 1.8
PNKP-202ENST00000593706 SHROOM2Q13796 1616 aa26.29■■□□□ 1.8
PNKP-202ENST00000593706 NUP160Q12769 1436 aa26.29■■□□□ 1.8
PNKP-202ENST00000593706 FHAD1B1AJZ9 1412 aa26.28■■□□□ 1.8
PNKP-202ENST00000593706 RUSC2Q8N2Y8 1516 aa26.12■■□□□ 1.77
PNKP-202ENST00000593706 KIF13AQ9H1H9 1805 aa26.09■■□□□ 1.77
PNKP-202ENST00000593706 PRG4Q92954 1404 aaPredicted RBP26.05■■□□□ 1.76
PNKP-202ENST00000593706 CUL7Q14999 1698 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms