RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 NISCHQ9Y2I1 1504 aa35.83■■■■□ 3.33
PNKP-221ENST00000627317 CCDC180Q9P1Z9 1646 aa31.94■■■□□ 2.7
PNKP-221ENST00000627317 ABCC9O60706 1549 aa31.41■■■□□ 2.62
PNKP-221ENST00000627317 RB1CC1Q8TDY2 1594 aa30.13■■■□□ 2.41
PNKP-221ENST00000627317 NACADO15069 1562 aa30.07■■■□□ 2.4
PNKP-221ENST00000627317 MYO15BQ96JP2 1530 aa29.9■■■□□ 2.38
PNKP-221ENST00000627317 ZCCHC6Q5VYS8 1495 aaKnown RBP29.83■■■□□ 2.37
PNKP-221ENST00000627317 DCAF8L2P0C7V8 631 aa29.77■■■□□ 2.36
PNKP-221ENST00000627317 DCAF1Q9Y4B6 1507 aa29.67■■■□□ 2.34
PNKP-221ENST00000627317 UNC13AQ9UPW8 1703 aa29.44■■■□□ 2.3
PNKP-221ENST00000627317 BICRAQ9NZM4 1560 aa29.32■■■□□ 2.28
PNKP-221ENST00000627317 PABPN1Q86U42 306 aaKnown RBP eCLIP29.28■■■□□ 2.285e-6■■■■□ 22.2
PNKP-221ENST00000627317 DNAJC5BQ9UF47 199 aa29.09■■■□□ 2.25
PNKP-221ENST00000627317 SCRIBQ14160 1630 aa29.08■■■□□ 2.25
PNKP-221ENST00000627317 SHROOM4Q9ULL8 1493 aa28.99■■■□□ 2.23
PNKP-221ENST00000627317 EIF4G1Q04637 1599 aaKnown RBP28.51■■■□□ 2.15
PNKP-221ENST00000627317 CC2D2AQ9P2K1 1620 aa28.43■■■□□ 2.14
PNKP-221ENST00000627317 CECR2Q9BXF3 1484 aa28.27■■■□□ 2.12
PNKP-221ENST00000627317 SMARCA4P51532 1647 aa27.83■■■□□ 2.05
PNKP-221ENST00000627317 NCAPD3P42695 1498 aa27.78■■■□□ 2.04
PNKP-221ENST00000627317 ATAD2BQ9ULI0 1458 aa27.76■■■□□ 2.03
PNKP-221ENST00000627317 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
PNKP-221ENST00000627317 SMARCA2P51531 1590 aa27.67■■■□□ 2.02
PNKP-221ENST00000627317 HMGXB3Q12766 1538 aa27.63■■■□□ 2.01
PNKP-221ENST00000627317 PEG3Q9GZU2 1588 aa27.63■■■□□ 2.01
PNKP-221ENST00000627317 MROH2BQ7Z745 1585 aa27.6■■■□□ 2.01
PNKP-221ENST00000627317 BAZ1BQ9UIG0 1483 aaKnown RBP27.46■■□□□ 1.99
PNKP-221ENST00000627317 WIZO95785 1651 aa27.25■■□□□ 1.95
PNKP-221ENST00000627317 RSF1Q96T23 1441 aaPredicted RBP27.21■■□□□ 1.95
PNKP-221ENST00000627317 NESP48681 1621 aa27.16■■□□□ 1.94
PNKP-221ENST00000627317 ERCC6Q03468 1493 aa27.05■■□□□ 1.92
PNKP-221ENST00000627317 LAMC3Q9Y6N6 1575 aa27.05■■□□□ 1.92
PNKP-221ENST00000627317 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
PNKP-221ENST00000627317 CUX2O14529 1486 aa26.93■■□□□ 1.9
PNKP-221ENST00000627317 CADPSQ9ULU8 1353 aa26.92■■□□□ 1.9
PNKP-221ENST00000627317 THOC2Q8NI27 1593 aaKnown RBP26.84■■□□□ 1.89
PNKP-221ENST00000627317 PDS5BQ9NTI5 1447 aa26.83■■□□□ 1.89
PNKP-221ENST00000627317 KIF21AQ7Z4S6 1674 aa26.79■■□□□ 1.88
PNKP-221ENST00000627317 CFTRP13569 1480 aa26.75■■□□□ 1.87
PNKP-221ENST00000627317 CCDC88BA6NC98 1476 aa26.66■■□□□ 1.86
PNKP-221ENST00000627317 MRC2Q9UBG0 1479 aa26.62■■□□□ 1.85
PNKP-221ENST00000627317 FANCD2Q9BXW9 1451 aa26.61■■□□□ 1.85
PNKP-221ENST00000627317 CEP164Q9UPV0 1460 aa26.58■■□□□ 1.85
PNKP-221ENST00000627317 WDR62O43379 1518 aa26.58■■□□□ 1.85
PNKP-221ENST00000627317 PRDM2Q13029 1718 aa26.45■■□□□ 1.83
PNKP-221ENST00000627317 SUPT5HO00267 1087 aaKnown RBP26.41■■□□□ 1.82
PNKP-221ENST00000627317 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.82
PNKP-221ENST00000627317 DNAJC5Q9H3Z4 198 aa26.32■■□□□ 1.8
PNKP-221ENST00000627317 TOPBP1Q92547 1522 aa26.18■■□□□ 1.78
PNKP-221ENST00000627317 DNMBPQ6XZF7 1577 aa26.12■■□□□ 1.77
PNKP-221ENST00000627317 ABCC8Q09428 1581 aa26.11■■□□□ 1.77
PNKP-221ENST00000627317 IFT140Q96RY7 1462 aa26.04■■□□□ 1.76
PNKP-221ENST00000627317 ZNF608Q9ULD9 1512 aaPredicted RBP25.98■■□□□ 1.75
PNKP-221ENST00000627317 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.74
PNKP-221ENST00000627317 TARBP1Q13395 1621 aaKnown RBP25.94■■□□□ 1.74
PNKP-221ENST00000627317 CUX1P39880 1505 aa25.92■■□□□ 1.74
PNKP-221ENST00000627317 EIF4G3O43432 1585 aaKnown RBP25.86■■□□□ 1.73
PNKP-221ENST00000627317 FGD5Q6ZNL6 1462 aa25.83■■□□□ 1.73
PNKP-221ENST00000627317 RAD54L2Q9Y4B4 1467 aa25.8■■□□□ 1.72
PNKP-221ENST00000627317 SOGA1O94964 1423 aa25.78■■□□□ 1.72
PNKP-221ENST00000627317 AQRO60306 1485 aaKnown RBP eCLIP25.77■■□□□ 1.727e-6■■□□□ 12.2
PNKP-221ENST00000627317 WDR97A6NE52 1622 aa25.7■■□□□ 1.71
PNKP-221ENST00000627317 OSCARQ8IYS5 282 aa25.66■■□□□ 1.7
PNKP-221ENST00000627317 TDRD9Q8NDG6 1382 aaKnown RBP25.66■■□□□ 1.7
PNKP-221ENST00000627317 TOP2BQ02880 1626 aa25.62■■□□□ 1.69
PNKP-221ENST00000627317 WRNQ14191 1432 aaPredicted RBP eCLIP25.62■■□□□ 1.69
PNKP-221ENST00000627317 BIVM-ERCC5R4GMW8 1640 aa25.61■■□□□ 1.69
PNKP-221ENST00000627317 SYNJ1O43426 1573 aa25.61■■□□□ 1.69
PNKP-221ENST00000627317 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
PNKP-221ENST00000627317 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
PNKP-221ENST00000627317 ABCA5Q8WWZ7 1642 aa25.53■■□□□ 1.68
PNKP-221ENST00000627317 GRIN2BQ13224 1484 aa25.53■■□□□ 1.68
PNKP-221ENST00000627317 CHD1O14646 1710 aa25.51■■□□□ 1.68
PNKP-221ENST00000627317 MAGI1Q96QZ7 1491 aaPredicted RBP25.5■■□□□ 1.67
PNKP-221ENST00000627317 GAPVD1Q14C86 1478 aa25.49■■□□□ 1.67
PNKP-221ENST00000627317 PBRM1Q86U86 1689 aa25.43■■□□□ 1.66
PNKP-221ENST00000627317 SYNJ2O15056 1496 aa25.4■■□□□ 1.66
PNKP-221ENST00000627317 FBLN2P98095 1184 aa25.36■■□□□ 1.65
PNKP-221ENST00000627317 RIMBP3CA6NJZ7 1639 aa25.36■■□□□ 1.65
PNKP-221ENST00000627317 RIMBP3BA6NNM3 1639 aa25.36■■□□□ 1.65
PNKP-221ENST00000627317 RIMBP3Q9UFD9 1639 aa25.36■■□□□ 1.65
PNKP-221ENST00000627317 ARHGEF11O15085 1522 aa25.36■■□□□ 1.65
PNKP-221ENST00000627317 CLASP1Q7Z460 1538 aa25.34■■□□□ 1.65
PNKP-221ENST00000627317 ADAMTS12P58397 1594 aa25.3■■□□□ 1.64
PNKP-221ENST00000627317 CHMP7Q8WUX9 453 aaPredicted RBP25.29■■□□□ 1.64
PNKP-221ENST00000627317 ERICH3Q5RHP9 1530 aa25.27■■□□□ 1.64
PNKP-221ENST00000627317 TRIM41Q8WV44 630 aa25.25■■□□□ 1.63
PNKP-221ENST00000627317 GRIN2AQ12879 1464 aa25.22■■□□□ 1.63
PNKP-221ENST00000627317 FHAD1B1AJZ9 1412 aa25.2■■□□□ 1.62
PNKP-221ENST00000627317 ARAP1Q96P48 1450 aa25.16■■□□□ 1.62
PNKP-221ENST00000627317 NUP160Q12769 1436 aa25.16■■□□□ 1.62
PNKP-221ENST00000627317 CEP170Q5SW79 1584 aa25.13■■□□□ 1.61
PNKP-221ENST00000627317 KIF27Q86VH2 1401 aa25.07■■□□□ 1.6
PNKP-221ENST00000627317 IGF1RP08069 1367 aa25.05■■□□□ 1.6
PNKP-221ENST00000627317 CYB5RLQ6IPT4 315 aa25.01■■□□□ 1.59
PNKP-221ENST00000627317 SHROOM2Q13796 1616 aa25■■□□□ 1.59
PNKP-221ENST00000627317 CUL7Q14999 1698 aa24.97■■□□□ 1.59
PNKP-221ENST00000627317 ERCC6L2Q5T890 1561 aa24.95■■□□□ 1.58
PNKP-221ENST00000627317 RUSC2Q8N2Y8 1516 aa24.94■■□□□ 1.58
PNKP-221ENST00000627317 CARMIL1Q5VZK9 1371 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms