RNA–Protein interactions for RNA: ENST00000349703.6

RFC1-201, Transcript of replication factor C subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RFC1, Length 4,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-201ENST00000349703 CHIC1Q5VXU3 224 aa12.44□□□□□ -0.42
RFC1-201ENST00000349703 EHMT2Q96KQ7 1210 aa11.85□□□□□ -0.51
RFC1-201ENST00000349703 AEBP2Q6ZN18 517 aaPredicted RBP11.44□□□□□ -0.58
RFC1-201ENST00000349703 DCAF8L2P0C7V8 631 aa11.18□□□□□ -0.62
RFC1-201ENST00000349703 PLPPR3Q6T4P5 718 aa11.08□□□□□ -0.64
RFC1-201ENST00000349703 SLC24A1O60721 1099 aa10.9□□□□□ -0.67
RFC1-201ENST00000349703 SLC4A1APQ9BWU0 796 aaKnown RBP10.64□□□□□ -0.71
RFC1-201ENST00000349703 SENP3Q9H4L4 574 aaPredicted RBP10.63□□□□□ -0.71
RFC1-201ENST00000349703 PHF23Q9BUL5 403 aaPredicted RBP10.53□□□□□ -0.72
RFC1-201ENST00000349703 NCBP3Q53F19 620 aaKnown RBP10.52□□□□□ -0.73
RFC1-201ENST00000349703 RANGAP1P46060 587 aaPredicted RBP10.45□□□□□ -0.74
RFC1-201ENST00000349703 AMER1Q5JTC6 1135 aaPredicted RBP10.35□□□□□ -0.75
RFC1-201ENST00000349703 KCNA4P22459 653 aa10.34□□□□□ -0.75
RFC1-201ENST00000349703 HAP1P54257 671 aaPredicted RBP10.27□□□□□ -0.77
RFC1-201ENST00000349703 MYT1LQ9UL68 1186 aa10.24□□□□□ -0.77
RFC1-201ENST00000349703 ATP1B4Q9UN42 357 aaPredicted RBP10.07□□□□□ -0.8
RFC1-201ENST00000349703 ADRA2BP18089 450 aa9.98□□□□□ -0.81
RFC1-201ENST00000349703 DCAF8L1A6NGE4 600 aa9.97□□□□□ -0.81
RFC1-201ENST00000349703 RTN4Q9NQC3 1192 aaKnown RBP9.96□□□□□ -0.81
RFC1-201ENST00000349703 FKBP8Q14318 412 aa9.95□□□□□ -0.82
RFC1-201ENST00000349703 SCAF1Q9H7N4 1312 aaKnown RBP9.94□□□□□ -0.82
RFC1-201ENST00000349703 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.92□□□□□ -0.82
RFC1-201ENST00000349703 KLHL34Q8N239 644 aa9.91□□□□□ -0.82
RFC1-201ENST00000349703 NBR1Q14596 966 aa9.9□□□□□ -0.82
RFC1-201ENST00000349703 PIAS4Q8N2W9 510 aaPredicted RBP9.87□□□□□ -0.83
RFC1-201ENST00000349703 BCANQ96GW7 911 aa9.83□□□□□ -0.84
RFC1-201ENST00000349703 PPP4R3CPQ6ZMV5 832 aa9.82□□□□□ -0.84
RFC1-201ENST00000349703 CSRNP3Q8WYN3 585 aa9.81□□□□□ -0.84
RFC1-201ENST00000349703 CFAP44Q96MT7 982 aa9.79□□□□□ -0.84
RFC1-201ENST00000349703 NISCHQ9Y2I1 1504 aa9.76□□□□□ -0.85
RFC1-201ENST00000349703 TPRNQ4KMQ1 711 aa9.68□□□□□ -0.86
RFC1-201ENST00000349703 C14orf37Q86TY3 774 aa9.66□□□□□ -0.86
RFC1-201ENST00000349703 TULP1O00294 542 aaPredicted RBP9.65□□□□□ -0.87
RFC1-201ENST00000349703 PLEKHG5O94827 1062 aa9.64□□□□□ -0.87
RFC1-201ENST00000349703 ERICH6Q7L0X2 663 aa9.6□□□□□ -0.87
RFC1-201ENST00000349703 FOXD4L1Q9NU39 408 aa9.53□□□□□ -0.88
RFC1-201ENST00000349703 FBXO3Q9UK99 471 aa9.47□□□□□ -0.89
RFC1-201ENST00000349703 PAXIP1Q6ZW49 1069 aaPredicted RBP9.46□□□□□ -0.9
RFC1-201ENST00000349703 PRKCSHP14314 528 aaPredicted RBP9.45□□□□□ -0.9
RFC1-201ENST00000349703 ARID3AQ99856 593 aa9.44□□□□□ -0.9
RFC1-201ENST00000349703 HOMEZQ8IX15 550 aa9.42□□□□□ -0.9
RFC1-201ENST00000349703 MYT1Q01538 1121 aa9.42□□□□□ -0.9
RFC1-201ENST00000349703 PLCD3Q8N3E9 789 aa9.42□□□□□ -0.9
RFC1-201ENST00000349703 CIZ1Q9ULV3 898 aaPredicted RBP9.4□□□□□ -0.91
RFC1-201ENST00000349703 PELP1Q8IZL8 1130 aaKnown RBP9.36□□□□□ -0.91
RFC1-201ENST00000349703 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.36□□□□□ -0.918e-7■■■□□ 16.6
RFC1-201ENST00000349703 POLR3GLQ9BT43 218 aa9.3□□□□□ -0.92
RFC1-201ENST00000349703 WDR70Q9NW82 654 aa9.29□□□□□ -0.92
RFC1-201ENST00000349703 CNKSR2Q8WXI2 1034 aa9.28□□□□□ -0.92
RFC1-201ENST00000349703 NPM3O75607 178 aaKnown RBP9.27□□□□□ -0.92
RFC1-201ENST00000349703 PPP6R1Q9UPN7 881 aa9.26□□□□□ -0.93
RFC1-201ENST00000349703 PODXL2Q9NZ53 605 aa9.25□□□□□ -0.93
RFC1-201ENST00000349703 TAOK2Q9UL54 1235 aa9.25□□□□□ -0.93
RFC1-201ENST00000349703 APLP2Q06481 763 aa9.23□□□□□ -0.93
RFC1-201ENST00000349703 ECM2O94769 699 aaPredicted RBP9.23□□□□□ -0.93
RFC1-201ENST00000349703 PLCB2Q00722 1185 aa9.23□□□□□ -0.93
RFC1-201ENST00000349703 SUPT5HO00267 1087 aaKnown RBP9.22□□□□□ -0.93
RFC1-201ENST00000349703 FOXD1Q16676 465 aa9.22□□□□□ -0.93
RFC1-201ENST00000349703 DAXXQ9UER7 740 aaPredicted RBP9.2□□□□□ -0.94
RFC1-201ENST00000349703 FBLN2P98095 1184 aa9.2□□□□□ -0.94
RFC1-201ENST00000349703 CCER1Q8TC90 406 aaPredicted RBP9.15□□□□□ -0.95
RFC1-201ENST00000349703 SPRYD3Q8NCJ5 442 aa9.14□□□□□ -0.95
RFC1-201ENST00000349703 CHGAP10645 457 aaKnown RBP9.13□□□□□ -0.95
RFC1-201ENST00000349703 GTF3C3Q9Y5Q9 886 aa9.12□□□□□ -0.95
RFC1-201ENST00000349703 ZBTB7CA1YPR0 619 aa9.11□□□□□ -0.95
RFC1-201ENST00000349703 MIER1Q8N108 512 aa9.11□□□□□ -0.95
RFC1-201ENST00000349703 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.1□□□□□ -0.95
RFC1-201ENST00000349703 HNRNPUL2Q1KMD3 747 aaKnown RBP9.1□□□□□ -0.95
RFC1-201ENST00000349703 HRCP23327 699 aa9.09□□□□□ -0.95
RFC1-201ENST00000349703 TTBK1Q5TCY1 1321 aaPredicted RBP9.08□□□□□ -0.96
RFC1-201ENST00000349703 VSIG10Q8N0Z9 540 aa9.07□□□□□ -0.96
RFC1-201ENST00000349703 ARXQ96QS3 562 aa9.06□□□□□ -0.96
RFC1-201ENST00000349703 KRI1Q8N9T8 703 aaKnown RBP9.06□□□□□ -0.96
RFC1-201ENST00000349703 TRIM41Q8WV44 630 aa9.04□□□□□ -0.96
RFC1-201ENST00000349703 MYCNP04198 464 aaPredicted RBP9.02□□□□□ -0.96
RFC1-201ENST00000349703 FAM9AQ8IZU1 332 aaPredicted RBP9.02□□□□□ -0.97
RFC1-201ENST00000349703 NPM2Q86SE8 214 aaKnown RBP8.99□□□□□ -0.97
RFC1-201ENST00000349703 NEUROD2Q15784 382 aa8.99□□□□□ -0.97
RFC1-201ENST00000349703 TRHP20396 242 aaPredicted RBP8.98□□□□□ -0.97
RFC1-201ENST00000349703 ZEB1P37275 1124 aaPredicted RBP8.94□□□□□ -0.98
RFC1-201ENST00000349703 HMGB1P09429 215 aaKnown RBP8.92□□□□□ -0.98
RFC1-201ENST00000349703 SPDYE4A6NLX3 237 aa8.92□□□□□ -0.98
RFC1-201ENST00000349703 PCGF6Q9BYE7 350 aa8.92□□□□□ -0.98
RFC1-201ENST00000349703 SAMD1Q6SPF0 538 aaPredicted RBP8.91□□□□□ -0.98
RFC1-201ENST00000349703 BCL11AQ9H165 835 aa8.88□□□□□ -0.99
RFC1-201ENST00000349703 CDK11BP21127 795 aaKnown RBP8.87□□□□□ -0.99
RFC1-201ENST00000349703 CDK11AQ9UQ88 783 aaPredicted RBP8.87□□□□□ -0.99
RFC1-201ENST00000349703 DCAF8Q5TAQ9 597 aa8.87□□□□□ -0.99
RFC1-201ENST00000349703 CCDC9Q9Y3X0 531 aaKnown RBP8.84□□□□□ -0.99
RFC1-201ENST00000349703 CAPN15O75808 1086 aa8.83□□□□□ -1
RFC1-201ENST00000349703 PDIA4P13667 645 aaKnown RBP8.83□□□□□ -1
RFC1-201ENST00000349703 PPP1R1BQ9UD71 204 aaPredicted RBP8.82□□□□□ -1
RFC1-201ENST00000349703 VASPP50552 380 aaPredicted RBP8.82□□□□□ -1
RFC1-201ENST00000349703 SPOCK2Q92563 424 aa8.82□□□□□ -1
RFC1-201ENST00000349703 MSH5O43196 834 aa8.82□□□□□ -1
RFC1-201ENST00000349703 ZBTB47Q9UFB7 747 aaPredicted RBP8.82□□□□□ -1
RFC1-201ENST00000349703 AEBP1Q8IUX7 1158 aa8.81□□□□□ -1
RFC1-201ENST00000349703 SHROOM4Q9ULL8 1493 aa8.81□□□□□ -1
RFC1-201ENST00000349703 USP35Q9P2H5 1018 aa8.78□□□□□ -1
RFC1-201ENST00000349703 TIMELESSQ9UNS1 1208 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms