RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 NISCHQ9Y2I1 1504 aa34.76■■■■□ 3.16
PNKP-223ENST00000629179 CCDC180Q9P1Z9 1646 aa30.96■■■□□ 2.55
PNKP-223ENST00000629179 ABCC9O60706 1549 aa30.51■■■□□ 2.47
PNKP-223ENST00000629179 RB1CC1Q8TDY2 1594 aa29.22■■■□□ 2.27
PNKP-223ENST00000629179 DCAF8L2P0C7V8 631 aa29.2■■■□□ 2.26
PNKP-223ENST00000629179 NACADO15069 1562 aa29.14■■■□□ 2.26
PNKP-223ENST00000629179 ZCCHC6Q5VYS8 1495 aaKnown RBP28.9■■■□□ 2.22
PNKP-223ENST00000629179 MYO15BQ96JP2 1530 aa28.87■■■□□ 2.21
PNKP-223ENST00000629179 DCAF1Q9Y4B6 1507 aa28.7■■■□□ 2.19
PNKP-223ENST00000629179 UNC13AQ9UPW8 1703 aa28.66■■■□□ 2.18
PNKP-223ENST00000629179 PABPN1Q86U42 306 aaKnown RBP eCLIP28.51■■■□□ 2.155e-6■■■■□ 22.2
PNKP-223ENST00000629179 BICRAQ9NZM4 1560 aa28.38■■■□□ 2.13
PNKP-223ENST00000629179 SCRIBQ14160 1630 aa28.29■■■□□ 2.12
PNKP-223ENST00000629179 DNAJC5BQ9UF47 199 aa28.19■■■□□ 2.1
PNKP-223ENST00000629179 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.07
PNKP-223ENST00000629179 EIF4G1Q04637 1599 aaKnown RBP27.62■■■□□ 2.01
PNKP-223ENST00000629179 CC2D2AQ9P2K1 1620 aa27.58■■■□□ 2.01
PNKP-223ENST00000629179 CECR2Q9BXF3 1484 aa27.4■■□□□ 1.98
PNKP-223ENST00000629179 SMARCA4P51532 1647 aa27.01■■□□□ 1.92
PNKP-223ENST00000629179 BAZ1AQ9NRL2 1556 aaPredicted RBP26.93■■□□□ 1.9
PNKP-223ENST00000629179 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
PNKP-223ENST00000629179 NCAPD3P42695 1498 aa26.89■■□□□ 1.9
PNKP-223ENST00000629179 SMARCA2P51531 1590 aa26.84■■□□□ 1.89
PNKP-223ENST00000629179 MROH2BQ7Z745 1585 aa26.82■■□□□ 1.88
PNKP-223ENST00000629179 HMGXB3Q12766 1538 aa26.73■■□□□ 1.87
PNKP-223ENST00000629179 PEG3Q9GZU2 1588 aa26.71■■□□□ 1.87
PNKP-223ENST00000629179 BAZ1BQ9UIG0 1483 aaKnown RBP26.67■■□□□ 1.86
PNKP-223ENST00000629179 WIZO95785 1651 aa26.55■■□□□ 1.84
PNKP-223ENST00000629179 RSF1Q96T23 1441 aaPredicted RBP26.44■■□□□ 1.82
PNKP-223ENST00000629179 NESP48681 1621 aa26.36■■□□□ 1.81
PNKP-223ENST00000629179 ERCC6Q03468 1493 aa26.28■■□□□ 1.8
PNKP-223ENST00000629179 LAMC3Q9Y6N6 1575 aa26.2■■□□□ 1.79
PNKP-223ENST00000629179 TOP2AP11388 1531 aaKnown RBP26.19■■□□□ 1.78
PNKP-223ENST00000629179 CADPSQ9ULU8 1353 aa26.12■■□□□ 1.77
PNKP-223ENST00000629179 KIF21AQ7Z4S6 1674 aa26.06■■□□□ 1.76
PNKP-223ENST00000629179 PDS5BQ9NTI5 1447 aa26.04■■□□□ 1.76
PNKP-223ENST00000629179 CUX2O14529 1486 aa26.02■■□□□ 1.76
PNKP-223ENST00000629179 THOC2Q8NI27 1593 aaKnown RBP25.95■■□□□ 1.75
PNKP-223ENST00000629179 CCDC88BA6NC98 1476 aa25.91■■□□□ 1.74
PNKP-223ENST00000629179 CFTRP13569 1480 aa25.91■■□□□ 1.74
PNKP-223ENST00000629179 FANCD2Q9BXW9 1451 aa25.82■■□□□ 1.72
PNKP-223ENST00000629179 MRC2Q9UBG0 1479 aa25.79■■□□□ 1.72
PNKP-223ENST00000629179 CEP164Q9UPV0 1460 aa25.79■■□□□ 1.72
PNKP-223ENST00000629179 PRDM2Q13029 1718 aa25.76■■□□□ 1.71
PNKP-223ENST00000629179 SUPT5HO00267 1087 aaKnown RBP25.72■■□□□ 1.71
PNKP-223ENST00000629179 WDR62O43379 1518 aa25.7■■□□□ 1.7
PNKP-223ENST00000629179 URB2Q14146 1524 aaKnown RBP25.59■■□□□ 1.69
PNKP-223ENST00000629179 DNAJC5Q9H3Z4 198 aa25.47■■□□□ 1.67
PNKP-223ENST00000629179 TOPBP1Q92547 1522 aa25.4■■□□□ 1.66
PNKP-223ENST00000629179 ABCC8Q09428 1581 aa25.35■■□□□ 1.65
PNKP-223ENST00000629179 DNMBPQ6XZF7 1577 aa25.34■■□□□ 1.65
PNKP-223ENST00000629179 IFT140Q96RY7 1462 aa25.25■■□□□ 1.63
PNKP-223ENST00000629179 ZNF608Q9ULD9 1512 aaPredicted RBP25.2■■□□□ 1.62
PNKP-223ENST00000629179 POLA1P09884 1462 aaPredicted RBP25.16■■□□□ 1.62
PNKP-223ENST00000629179 CUX1P39880 1505 aa25.16■■□□□ 1.62
PNKP-223ENST00000629179 TARBP1Q13395 1621 aaKnown RBP25.14■■□□□ 1.61
PNKP-223ENST00000629179 FGD5Q6ZNL6 1462 aa25.09■■□□□ 1.61
PNKP-223ENST00000629179 RAD54L2Q9Y4B4 1467 aa25.09■■□□□ 1.61
PNKP-223ENST00000629179 SOGA1O94964 1423 aa25.08■■□□□ 1.61
PNKP-223ENST00000629179 EIF4G3O43432 1585 aaKnown RBP25.07■■□□□ 1.6
PNKP-223ENST00000629179 AQRO60306 1485 aaKnown RBP eCLIP25.05■■□□□ 1.69e-7■■■■□ 21.3
PNKP-223ENST00000629179 TDRD9Q8NDG6 1382 aaKnown RBP24.98■■□□□ 1.59
PNKP-223ENST00000629179 OSCARQ8IYS5 282 aa24.97■■□□□ 1.59
PNKP-223ENST00000629179 WRNQ14191 1432 aaPredicted RBP eCLIP24.92■■□□□ 1.58
PNKP-223ENST00000629179 WDR97A6NE52 1622 aa24.9■■□□□ 1.58
PNKP-223ENST00000629179 SYNJ1O43426 1573 aa24.89■■□□□ 1.58
PNKP-223ENST00000629179 TOP2BQ02880 1626 aa24.89■■□□□ 1.57
PNKP-223ENST00000629179 BIVM-ERCC5R4GMW8 1640 aa24.89■■□□□ 1.57
PNKP-223ENST00000629179 CHD1O14646 1710 aa24.84■■□□□ 1.57
PNKP-223ENST00000629179 ABCA10Q8WWZ4 1543 aa24.82■■□□□ 1.56
PNKP-223ENST00000629179 FBLN2P98095 1184 aa24.8■■□□□ 1.56
PNKP-223ENST00000629179 SNAPC4Q5SXM2 1469 aa24.78■■□□□ 1.56
PNKP-223ENST00000629179 GRIN2BQ13224 1484 aa24.77■■□□□ 1.56
PNKP-223ENST00000629179 GAPVD1Q14C86 1478 aa24.77■■□□□ 1.56
PNKP-223ENST00000629179 PBRM1Q86U86 1689 aa24.76■■□□□ 1.55
PNKP-223ENST00000629179 ABCA5Q8WWZ7 1642 aa24.74■■□□□ 1.55
PNKP-223ENST00000629179 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
PNKP-223ENST00000629179 CHMP7Q8WUX9 453 aaPredicted RBP24.67■■□□□ 1.54
PNKP-223ENST00000629179 SYNJ2O15056 1496 aa24.63■■□□□ 1.53
PNKP-223ENST00000629179 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
PNKP-223ENST00000629179 RIMBP3CA6NJZ7 1639 aa24.6■■□□□ 1.53
PNKP-223ENST00000629179 RIMBP3BA6NNM3 1639 aa24.6■■□□□ 1.53
PNKP-223ENST00000629179 RIMBP3Q9UFD9 1639 aa24.6■■□□□ 1.53
PNKP-223ENST00000629179 ARHGEF11O15085 1522 aa24.55■■□□□ 1.52
PNKP-223ENST00000629179 ERICH3Q5RHP9 1530 aa24.51■■□□□ 1.51
PNKP-223ENST00000629179 ADAMTS12P58397 1594 aa24.51■■□□□ 1.51
PNKP-223ENST00000629179 CLASP1Q7Z460 1538 aa24.5■■□□□ 1.51
PNKP-223ENST00000629179 GRIN2AQ12879 1464 aa24.46■■□□□ 1.51
PNKP-223ENST00000629179 FHAD1B1AJZ9 1412 aa24.46■■□□□ 1.51
PNKP-223ENST00000629179 KIF27Q86VH2 1401 aa24.4■■□□□ 1.5
PNKP-223ENST00000629179 CYB5RLQ6IPT4 315 aa24.38■■□□□ 1.49
PNKP-223ENST00000629179 CEP170Q5SW79 1584 aa24.37■■□□□ 1.49
PNKP-223ENST00000629179 IGF1RP08069 1367 aa24.36■■□□□ 1.49
PNKP-223ENST00000629179 NUP160Q12769 1436 aa24.35■■□□□ 1.49
PNKP-223ENST00000629179 ARAP1Q96P48 1450 aa24.35■■□□□ 1.49
PNKP-223ENST00000629179 CUL7Q14999 1698 aa24.27■■□□□ 1.48
PNKP-223ENST00000629179 ERCC6L2Q5T890 1561 aa24.2■■□□□ 1.47
PNKP-223ENST00000629179 RUSC2Q8N2Y8 1516 aa24.2■■□□□ 1.47
PNKP-223ENST00000629179 CARMIL1Q5VZK9 1371 aa24.2■■□□□ 1.46
PNKP-223ENST00000629179 SHROOM2Q13796 1616 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms