RNA–Protein interactions for RNA: ENST00000509268.1

XRCC4-204, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 2

Gene XRCC4, Length 1,567 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-204ENST00000509268 AEBP2Q6ZN18 517 aaPredicted RBP22.08■■□□□ 1.12
XRCC4-204ENST00000509268 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
XRCC4-204ENST00000509268 SENP3Q9H4L4 574 aaPredicted RBP18.99■□□□□ 0.63
XRCC4-204ENST00000509268 PHF23Q9BUL5 403 aaPredicted RBP18.65■□□□□ 0.58
XRCC4-204ENST00000509268 FOXD1Q16676 465 aa17.68■□□□□ 0.42
XRCC4-204ENST00000509268 POTEDQ86YR6 584 aa16.91■□□□□ 0.3
XRCC4-204ENST00000509268 MSH5O43196 834 aa16.77■□□□□ 0.28
XRCC4-204ENST00000509268 PIAS4Q8N2W9 510 aaPredicted RBP16.43■□□□□ 0.22
XRCC4-204ENST00000509268 PLPPR3Q6T4P5 718 aa16.39■□□□□ 0.21
XRCC4-204ENST00000509268 PPP6R1Q9UPN7 881 aa16.21■□□□□ 0.18
XRCC4-204ENST00000509268 ADRA2BP18089 450 aa16.14■□□□□ 0.17
XRCC4-204ENST00000509268 DMRT2Q9Y5R5 561 aa14.99□□□□□ -0.01
XRCC4-204ENST00000509268 MAPK8IP2Q13387 824 aaPredicted RBP14.93□□□□□ -0.02
XRCC4-204ENST00000509268 SCAF1Q9H7N4 1312 aaKnown RBP14.92□□□□□ -0.02
XRCC4-204ENST00000509268 CACNB1Q02641 598 aaPredicted RBP14.57□□□□□ -0.08
XRCC4-204ENST00000509268 DCAF8L1A6NGE4 600 aa14.34□□□□□ -0.11
XRCC4-204ENST00000509268 HOXD11P31277 338 aaPredicted RBP14.3□□□□□ -0.12
XRCC4-204ENST00000509268 PPP4R3CPQ6ZMV5 832 aa14.28□□□□□ -0.12
XRCC4-204ENST00000509268 RNF39Q9H2S5 420 aa14.23□□□□□ -0.13
XRCC4-204ENST00000509268 CNKSR2Q8WXI2 1034 aa14.13□□□□□ -0.15
XRCC4-204ENST00000509268 RNF216Q9NWF9 866 aaPredicted RBP14.11□□□□□ -0.15
XRCC4-204ENST00000509268 C1QBPQ07021 282 aaKnown RBP14.05□□□□□ -0.16
XRCC4-204ENST00000509268 DNAJC5BQ9UF47 199 aa13.98□□□□□ -0.17
XRCC4-204ENST00000509268 NCBP3Q53F19 620 aaKnown RBP13.7□□□□□ -0.22
XRCC4-204ENST00000509268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.62□□□□□ -0.23
XRCC4-204ENST00000509268 NPM3O75607 178 aaKnown RBP13.41□□□□□ -0.26
XRCC4-204ENST00000509268 U3KPZ7 1027 aaPredicted RBP13.24□□□□□ -0.29
XRCC4-204ENST00000509268 DSG3P32926 999 aa13.2□□□□□ -0.3
XRCC4-204ENST00000509268 POTEHQ6S545 545 aa13.2□□□□□ -0.3
XRCC4-204ENST00000509268 CAPN15O75808 1086 aa13.17□□□□□ -0.3
XRCC4-204ENST00000509268 SPINK5Q9NQ38 1064 aaPredicted RBP13.13□□□□□ -0.31
XRCC4-204ENST00000509268 APLP2Q06481 763 aa12.98□□□□□ -0.33
XRCC4-204ENST00000509268 ZNF219Q9P2Y4 722 aaPredicted RBP12.9□□□□□ -0.35
XRCC4-204ENST00000509268 SLC4A2P04920 1241 aa12.89□□□□□ -0.35
XRCC4-204ENST00000509268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.86□□□□□ -0.35
XRCC4-204ENST00000509268 HNRNPUL2Q1KMD3 747 aaKnown RBP12.86□□□□□ -0.35
XRCC4-204ENST00000509268 TRHP20396 242 aaPredicted RBP12.86□□□□□ -0.35
XRCC4-204ENST00000509268 KCNA4P22459 653 aa12.79□□□□□ -0.36
XRCC4-204ENST00000509268 ABCB7O75027 752 aa12.78□□□□□ -0.36
XRCC4-204ENST00000509268 SAMD1Q6SPF0 538 aaPredicted RBP12.74□□□□□ -0.37
XRCC4-204ENST00000509268 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
XRCC4-204ENST00000509268 CHRDL2Q6WN34 429 aa12.47□□□□□ -0.41
XRCC4-204ENST00000509268 MYCNP04198 464 aaPredicted RBP12.46□□□□□ -0.42
XRCC4-204ENST00000509268 POLA2Q14181 598 aa12.45□□□□□ -0.42
XRCC4-204ENST00000509268 AKT1S1Q96B36 256 aa12.29□□□□□ -0.44
XRCC4-204ENST00000509268 ZBTB12Q9Y330 459 aaPredicted RBP12.26□□□□□ -0.45
XRCC4-204ENST00000509268 SP7Q8TDD2 431 aaPredicted RBP12.21□□□□□ -0.46
XRCC4-204ENST00000509268 REM2Q8IYK8 340 aaPredicted RBP12.13□□□□□ -0.47
XRCC4-204ENST00000509268 FOXD4L1Q9NU39 408 aa12.11□□□□□ -0.47
XRCC4-204ENST00000509268 ATF5Q9Y2D1 282 aaPredicted RBP12.09□□□□□ -0.47
XRCC4-204ENST00000509268 PIP4P2Q8N4L2 257 aa12.08□□□□□ -0.48
XRCC4-204ENST00000509268 SLC4A1APQ9BWU0 796 aaKnown RBP12.05□□□□□ -0.48
XRCC4-204ENST00000509268 OSCARQ8IYS5 282 aa12.02□□□□□ -0.49
XRCC4-204ENST00000509268 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
XRCC4-204ENST00000509268 HAX1O00165 279 aa11.98□□□□□ -0.49
XRCC4-204ENST00000509268 PITPNM1O00562 1244 aa11.97□□□□□ -0.49
XRCC4-204ENST00000509268 ATXN8OSP0DMR3 200 aa11.84□□□□□ -0.51
XRCC4-204ENST00000509268 SPDYE2BA6NHP3 402 aa11.81□□□□□ -0.52
XRCC4-204ENST00000509268 SPDYE6P0CI01 402 aa11.81□□□□□ -0.52
XRCC4-204ENST00000509268 SPDYE2Q495Y8 402 aa11.81□□□□□ -0.52
XRCC4-204ENST00000509268 FBLN2P98095 1184 aa11.77□□□□□ -0.53
XRCC4-204ENST00000509268 EVX2Q03828 476 aa11.74□□□□□ -0.53
XRCC4-204ENST00000509268 ZBTB22O15209 634 aa11.71□□□□□ -0.53
XRCC4-204ENST00000509268 SPDYE1Q8NFV5 336 aaPredicted RBP11.7□□□□□ -0.54
XRCC4-204ENST00000509268 PRKAR2AP13861 404 aaKnown RBP11.67□□□□□ -0.54
XRCC4-204ENST00000509268 CLEC11AQ9Y240 323 aa11.63□□□□□ -0.55
XRCC4-204ENST00000509268 C19orf67A6NJJ6 358 aa11.62□□□□□ -0.55
XRCC4-204ENST00000509268 ZNF692Q9BU19 519 aaPredicted RBP11.58□□□□□ -0.55
XRCC4-204ENST00000509268 SSUH2Q9Y2M2 353 aa11.58□□□□□ -0.55
XRCC4-204ENST00000509268 MKRN4PQ13434 485 aaPredicted RBP11.54□□□□□ -0.56
XRCC4-204ENST00000509268 GABBR2O75899 941 aa11.51□□□□□ -0.57
XRCC4-204ENST00000509268 LHX8Q68G74 356 aa11.45□□□□□ -0.58
XRCC4-204ENST00000509268 PRR29P0C7W0 189 aa11.43□□□□□ -0.58
XRCC4-204ENST00000509268 CHADLQ6NUI6 762 aa11.41□□□□□ -0.58
XRCC4-204ENST00000509268 PABPN1Q86U42 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
XRCC4-204ENST00000509268 CLCN6P51797 869 aa11.36□□□□□ -0.59
XRCC4-204ENST00000509268 CD44P16070 742 aaKnown RBP11.28□□□□□ -0.6
XRCC4-204ENST00000509268 FARP1Q9Y4F1 1045 aaPredicted RBP11.27□□□□□ -0.61
XRCC4-204ENST00000509268 POTEIP0CG38 1075 aa11.23□□□□□ -0.61
XRCC4-204ENST00000509268 DCBLD2Q96PD2 775 aa11.15□□□□□ -0.62
XRCC4-204ENST00000509268 ZNF579Q8NAF0 562 aaKnown RBP11.12□□□□□ -0.63
XRCC4-204ENST00000509268 STAG3Q9UJ98 1225 aa11.09□□□□□ -0.63
XRCC4-204ENST00000509268 ZRANB1Q9UGI0 708 aa11.07□□□□□ -0.64
XRCC4-204ENST00000509268 CREBZFQ9NS37 354 aa11.03□□□□□ -0.64
XRCC4-204ENST00000509268 PLSCR2Q9NRY7 297 aa10.97□□□□□ -0.65
XRCC4-204ENST00000509268 PAK3O75914 559 aaPredicted RBP10.96□□□□□ -0.65
XRCC4-204ENST00000509268 GALR2O43603 387 aaPredicted RBP10.94□□□□□ -0.66
XRCC4-204ENST00000509268 OTUD5Q96G74 571 aa10.9□□□□□ -0.66
XRCC4-204ENST00000509268 NPM1P06748 294 aaKnown RBP eCLIP10.9□□□□□ -0.67
XRCC4-204ENST00000509268 CSRNP3Q8WYN3 585 aa10.89□□□□□ -0.67
XRCC4-204ENST00000509268 SPDYE4A6NLX3 237 aa10.86□□□□□ -0.67
XRCC4-204ENST00000509268 PHF12Q96QT6 1004 aa10.84□□□□□ -0.67
XRCC4-204ENST00000509268 POTEB2H3BUK9 544 aa10.83□□□□□ -0.68
XRCC4-204ENST00000509268 MNX1P50219 401 aaPredicted RBP10.78□□□□□ -0.68
XRCC4-204ENST00000509268 POTEMA6NI47 508 aa10.77□□□□□ -0.69
XRCC4-204ENST00000509268 PELP1Q8IZL8 1130 aaKnown RBP10.77□□□□□ -0.69
XRCC4-204ENST00000509268 C7P10643 843 aa10.75□□□□□ -0.69
XRCC4-204ENST00000509268 ASTLQ6HA08 431 aaPredicted RBP10.75□□□□□ -0.69
XRCC4-204ENST00000509268 PCDH10Q9P2E7 1040 aa10.75□□□□□ -0.69
XRCC4-204ENST00000509268 SLC39A7Q92504 469 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms