RNA–Protein interactions for RNA: ENST00000381897.5

RFC1-202, Transcript of replication factor C subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RFC1, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-202ENST00000381897 EHMT2Q96KQ7 1210 aa10.36□□□□□ -0.75
RFC1-202ENST00000381897 CHIC1Q5VXU3 224 aa9.93□□□□□ -0.82
RFC1-202ENST00000381897 SLC24A1O60721 1099 aa9.92□□□□□ -0.82
RFC1-202ENST00000381897 NISCHQ9Y2I1 1504 aa9.76□□□□□ -0.85
RFC1-202ENST00000381897 DCAF8L2P0C7V8 631 aa9.75□□□□□ -0.85
RFC1-202ENST00000381897 RANGAP1P46060 587 aaPredicted RBP9.67□□□□□ -0.86
RFC1-202ENST00000381897 MYT1Q01538 1121 aa9.42□□□□□ -0.9
RFC1-202ENST00000381897 PELP1Q8IZL8 1130 aaKnown RBP9.36□□□□□ -0.91
RFC1-202ENST00000381897 ERICH6Q7L0X2 663 aa9.21□□□□□ -0.93
RFC1-202ENST00000381897 MYT1LQ9UL68 1186 aa9.19□□□□□ -0.94
RFC1-202ENST00000381897 HRCP23327 699 aa9.09□□□□□ -0.95
RFC1-202ENST00000381897 AMER1Q5JTC6 1135 aaPredicted RBP9.08□□□□□ -0.96
RFC1-202ENST00000381897 TTBK1Q5TCY1 1321 aaPredicted RBP9.08□□□□□ -0.96
RFC1-202ENST00000381897 HAP1P54257 671 aaPredicted RBP9.08□□□□□ -0.96
RFC1-202ENST00000381897 AEBP2Q6ZN18 517 aaPredicted RBP9.02□□□□□ -0.97
RFC1-202ENST00000381897 SHROOM4Q9ULL8 1493 aa8.99□□□□□ -0.97
RFC1-202ENST00000381897 SLC4A1APQ9BWU0 796 aaKnown RBP8.97□□□□□ -0.97
RFC1-202ENST00000381897 RTN4Q9NQC3 1192 aaKnown RBP8.96□□□□□ -0.98
RFC1-202ENST00000381897 PLPPR3Q6T4P5 718 aa8.94□□□□□ -0.98
RFC1-202ENST00000381897 ZEB1P37275 1124 aaPredicted RBP8.94□□□□□ -0.98
RFC1-202ENST00000381897 SUPT5HO00267 1087 aaKnown RBP8.93□□□□□ -0.98
RFC1-202ENST00000381897 PCGF6Q9BYE7 350 aa8.92□□□□□ -0.98
RFC1-202ENST00000381897 POLR3GLQ9BT43 218 aa8.83□□□□□ -1
RFC1-202ENST00000381897 KCNA4P22459 653 aa8.76□□□□□ -1.01
RFC1-202ENST00000381897 CENPBP07199 599 aaPredicted RBP8.76□□□□□ -1.01
RFC1-202ENST00000381897 ATP1B4Q9UN42 357 aaPredicted RBP8.75□□□□□ -1.01
RFC1-202ENST00000381897 TPRNQ4KMQ1 711 aa8.75□□□□□ -1.01
RFC1-202ENST00000381897 C14orf37Q86TY3 774 aa8.74□□□□□ -1.01
RFC1-202ENST00000381897 BCANQ96GW7 911 aa8.74□□□□□ -1.01
RFC1-202ENST00000381897 PRKCSHP14314 528 aaPredicted RBP8.72□□□□□ -1.01
RFC1-202ENST00000381897 DAXXQ9UER7 740 aaPredicted RBP8.72□□□□□ -1.01
RFC1-202ENST00000381897 TRIM26Q12899 539 aaPredicted RBP8.72□□□□□ -1.01
RFC1-202ENST00000381897 TULP1O00294 542 aaPredicted RBP8.7□□□□□ -1.02
RFC1-202ENST00000381897 PPARGC1BQ86YN6 1023 aaKnown RBP8.68□□□□□ -1.02
RFC1-202ENST00000381897 NBR1Q14596 966 aa8.67□□□□□ -1.02
RFC1-202ENST00000381897 HOMEZQ8IX15 550 aa8.65□□□□□ -1.02
RFC1-202ENST00000381897 PODXL2Q9NZ53 605 aa8.65□□□□□ -1.02
RFC1-202ENST00000381897 DCAF1Q9Y4B6 1507 aa8.62□□□□□ -1.03
RFC1-202ENST00000381897 ARID3AQ99856 593 aa8.59□□□□□ -1.03
RFC1-202ENST00000381897 NCBP3Q53F19 620 aaKnown RBP8.57□□□□□ -1.04
RFC1-202ENST00000381897 FKBP8Q14318 412 aa8.56□□□□□ -1.04
RFC1-202ENST00000381897 CFAP44Q96MT7 982 aa8.55□□□□□ -1.04
RFC1-202ENST00000381897 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.54□□□□□ -1.04
RFC1-202ENST00000381897 CCDC180Q9P1Z9 1646 aa8.5□□□□□ -1.05
RFC1-202ENST00000381897 SCAF1Q9H7N4 1312 aaKnown RBP8.48□□□□□ -1.05
RFC1-202ENST00000381897 ACIN1Q9UKV3 1341 aaKnown RBP8.48□□□□□ -1.05
RFC1-202ENST00000381897 FAM9AQ8IZU1 332 aaPredicted RBP8.48□□□□□ -1.05
RFC1-202ENST00000381897 EIF5BO60841 1220 aaKnown RBP8.47□□□□□ -1.05
RFC1-202ENST00000381897 PHF23Q9BUL5 403 aaPredicted RBP8.46□□□□□ -1.06
RFC1-202ENST00000381897 CSRNP3Q8WYN3 585 aa8.46□□□□□ -1.06
RFC1-202ENST00000381897 CCER1Q8TC90 406 aaPredicted RBP8.46□□□□□ -1.06
RFC1-202ENST00000381897 GTF3C3Q9Y5Q9 886 aa8.41□□□□□ -1.06
RFC1-202ENST00000381897 MYO15BQ96JP2 1530 aa8.41□□□□□ -1.06
RFC1-202ENST00000381897 NPM2Q86SE8 214 aaKnown RBP8.38□□□□□ -1.07
RFC1-202ENST00000381897 LOC105371045A0A1W2PR82 267 aa8.38□□□□□ -1.07
RFC1-202ENST00000381897 KLHL34Q8N239 644 aa8.38□□□□□ -1.07
RFC1-202ENST00000381897 DIEXFQ68CQ4 756 aaKnown RBP8.37□□□□□ -1.07
RFC1-202ENST00000381897 CDK11BP21127 795 aaKnown RBP8.37□□□□□ -1.07
RFC1-202ENST00000381897 CDK11AQ9UQ88 783 aaPredicted RBP8.37□□□□□ -1.07
RFC1-202ENST00000381897 TRIM41Q8WV44 630 aa8.36□□□□□ -1.07
RFC1-202ENST00000381897 ARXQ96QS3 562 aa8.36□□□□□ -1.07
RFC1-202ENST00000381897 TAOK2Q9UL54 1235 aa8.36□□□□□ -1.07
RFC1-202ENST00000381897 YTHDC1Q96MU7 727 aaKnown RBP8.35□□□□□ -1.07
RFC1-202ENST00000381897 CLSPNQ9HAW4 1339 aa8.33□□□□□ -1.08
RFC1-202ENST00000381897 NEUROD1Q13562 356 aa8.29□□□□□ -1.08
RFC1-202ENST00000381897 ZCCHC6Q5VYS8 1495 aaKnown RBP8.28□□□□□ -1.08
RFC1-202ENST00000381897 PAXIP1Q6ZW49 1069 aaPredicted RBP8.26□□□□□ -1.09
RFC1-202ENST00000381897 HMGB1P09429 215 aaKnown RBP8.25□□□□□ -1.09
RFC1-202ENST00000381897 SENP3Q9H4L4 574 aaPredicted RBP8.24□□□□□ -1.09
RFC1-202ENST00000381897 ZBTB7CA1YPR0 619 aa8.22□□□□□ -1.09
RFC1-202ENST00000381897 ZNF316A6NFI3 1004 aaPredicted RBP8.21□□□□□ -1.1
RFC1-202ENST00000381897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.2□□□□□ -1.1
RFC1-202ENST00000381897 NEFLP07196 543 aa8.19□□□□□ -1.1
RFC1-202ENST00000381897 APLP2Q06481 763 aa8.18□□□□□ -1.1
RFC1-202ENST00000381897 TIMELESSQ9UNS1 1208 aa8.18□□□□□ -1.1
RFC1-202ENST00000381897 ARID4BQ4LE39 1312 aaPredicted RBP8.17□□□□□ -1.1
RFC1-202ENST00000381897 PLCB2Q00722 1185 aa8.16□□□□□ -1.1
RFC1-202ENST00000381897 ADRA2BP18089 450 aa8.14□□□□□ -1.11
RFC1-202ENST00000381897 ANP32EQ9BTT0 268 aa8.11□□□□□ -1.11
RFC1-202ENST00000381897 USP35Q9P2H5 1018 aa8.11□□□□□ -1.11
RFC1-202ENST00000381897 ABCC9O60706 1549 aa8.09□□□□□ -1.11
RFC1-202ENST00000381897 CCDC9Q9Y3X0 531 aaKnown RBP8.05□□□□□ -1.12
RFC1-202ENST00000381897 BCL11AQ9H165 835 aa8.05□□□□□ -1.12
RFC1-202ENST00000381897 DCAF8L1A6NGE4 600 aa8.04□□□□□ -1.12
RFC1-202ENST00000381897 UBTFP17480 764 aaKnown RBP8.01□□□□□ -1.13
RFC1-202ENST00000381897 PPP4R3CPQ6ZMV5 832 aa8.01□□□□□ -1.13
RFC1-202ENST00000381897 ZNF526Q8TF50 670 aaPredicted RBP8.01□□□□□ -1.13
RFC1-202ENST00000381897 PPP1R1BQ9UD71 204 aaPredicted RBP8.01□□□□□ -1.13
RFC1-202ENST00000381897 AEBP1Q8IUX7 1158 aa8□□□□□ -1.13
RFC1-202ENST00000381897 SCRIBQ14160 1630 aa7.98□□□□□ -1.13
RFC1-202ENST00000381897 MIER1Q8N108 512 aa7.97□□□□□ -1.13
RFC1-202ENST00000381897 CIZ1Q9ULV3 898 aaPredicted RBP7.97□□□□□ -1.13
RFC1-202ENST00000381897 PDIA4P13667 645 aaKnown RBP7.96□□□□□ -1.14
RFC1-202ENST00000381897 NEUROD2Q15784 382 aa7.95□□□□□ -1.14
RFC1-202ENST00000381897 GLIPR1L2Q4G1C9 344 aa7.95□□□□□ -1.14
RFC1-202ENST00000381897 RTL5Q5HYW3 569 aaPredicted RBP7.95□□□□□ -1.14
RFC1-202ENST00000381897 PTMSP20962 102 aa7.94□□□□□ -1.14
RFC1-202ENST00000381897 HNRNPUL2Q1KMD3 747 aaKnown RBP7.94□□□□□ -1.14
RFC1-202ENST00000381897 VSIG10Q8N0Z9 540 aa7.94□□□□□ -1.14
RFC1-202ENST00000381897 RB1CC1Q8TDY2 1594 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms