RNA–Protein interactions for RNA: ENST00000427926.5

CLTCL1-202, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,513 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-202ENST00000427926 DCAF8L2P0C7V8 631 aa17.77■□□□□ 0.43
CLTCL1-202ENST00000427926 NISCHQ9Y2I1 1504 aa16.54■□□□□ 0.24
CLTCL1-202ENST00000427926 SUPT5HO00267 1087 aaKnown RBP16.24■□□□□ 0.19
CLTCL1-202ENST00000427926 FAM9AQ8IZU1 332 aaPredicted RBP16.11■□□□□ 0.17
CLTCL1-202ENST00000427926 EHMT2Q96KQ7 1210 aa15.98■□□□□ 0.15
CLTCL1-202ENST00000427926 SHROOM4Q9ULL8 1493 aa15.92■□□□□ 0.14
CLTCL1-202ENST00000427926 APLP2Q06481 763 aa15.88■□□□□ 0.13
CLTCL1-202ENST00000427926 MYT1Q01538 1121 aa15.81■□□□□ 0.12
CLTCL1-202ENST00000427926 PELP1Q8IZL8 1130 aaKnown RBP15.54■□□□□ 0.08
CLTCL1-202ENST00000427926 ATP1B4Q9UN42 357 aaPredicted RBP15.48■□□□□ 0.07
CLTCL1-202ENST00000427926 RANGAP1P46060 587 aaPredicted RBP15.45■□□□□ 0.06
CLTCL1-202ENST00000427926 TTBK1Q5TCY1 1321 aaPredicted RBP15.38■□□□□ 0.05
CLTCL1-202ENST00000427926 MYT1LQ9UL68 1186 aa15.24■□□□□ 0.03
CLTCL1-202ENST00000427926 UBTFP17480 764 aaKnown RBP15.09■□□□□ 0.01
CLTCL1-202ENST00000427926 TRIM41Q8WV44 630 aa15.06■□□□□ 0
CLTCL1-202ENST00000427926 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.05■□□□□ -0
CLTCL1-202ENST00000427926 HNRNPUL2Q1KMD3 747 aaKnown RBP15.05■□□□□ -0
CLTCL1-202ENST00000427926 PCGF6Q9BYE7 350 aa14.96□□□□□ -0.01
CLTCL1-202ENST00000427926 CHIC1Q5VXU3 224 aa14.89□□□□□ -0.03
CLTCL1-202ENST00000427926 CCER1Q8TC90 406 aaPredicted RBP14.82□□□□□ -0.04
CLTCL1-202ENST00000427926 ERICH6Q7L0X2 663 aa14.82□□□□□ -0.04
CLTCL1-202ENST00000427926 POLR3GLQ9BT43 218 aa14.69□□□□□ -0.06
CLTCL1-202ENST00000427926 SLC4A1APQ9BWU0 796 aaKnown RBP14.67□□□□□ -0.06
CLTCL1-202ENST00000427926 NEFLP07196 543 aa14.64□□□□□ -0.07
CLTCL1-202ENST00000427926 ITGAEP38570 1179 aa14.63□□□□□ -0.07
CLTCL1-202ENST00000427926 CENPBP07199 599 aaPredicted RBP14.61□□□□□ -0.07
CLTCL1-202ENST00000427926 ZEB1P37275 1124 aaPredicted RBP14.57□□□□□ -0.08
CLTCL1-202ENST00000427926 FBLN2P98095 1184 aa14.5□□□□□ -0.09
CLTCL1-202ENST00000427926 PPARGC1BQ86YN6 1023 aaKnown RBP14.49□□□□□ -0.09
CLTCL1-202ENST00000427926 ABCC9O60706 1549 aa14.47□□□□□ -0.09
CLTCL1-202ENST00000427926 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.09
CLTCL1-202ENST00000427926 CNGB1Q14028 1251 aaPredicted RBP14.46□□□□□ -0.1
CLTCL1-202ENST00000427926 YTHDC1Q96MU7 727 aaKnown RBP14.4□□□□□ -0.1
CLTCL1-202ENST00000427926 DAXXQ9UER7 740 aaPredicted RBP14.39□□□□□ -0.11
CLTCL1-202ENST00000427926 BCANQ96GW7 911 aa14.39□□□□□ -0.11
CLTCL1-202ENST00000427926 ESF1Q9H501 851 aaKnown RBP14.29□□□□□ -0.12
CLTCL1-202ENST00000427926 TRIM52Q96A61 297 aa14.27□□□□□ -0.12
CLTCL1-202ENST00000427926 SLC24A1O60721 1099 aa14.25□□□□□ -0.13
CLTCL1-202ENST00000427926 FAM50AQ14320 339 aaKnown RBP14.25□□□□□ -0.13
CLTCL1-202ENST00000427926 HRCP23327 699 aa14.22□□□□□ -0.13
CLTCL1-202ENST00000427926 PLPPR3Q6T4P5 718 aa14.2□□□□□ -0.14
CLTCL1-202ENST00000427926 CLSPNQ9HAW4 1339 aa14.17□□□□□ -0.14
CLTCL1-202ENST00000427926 CCDC180Q9P1Z9 1646 aa14.15□□□□□ -0.14
CLTCL1-202ENST00000427926 NPM1P06748 294 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLTCL1-202ENST00000427926 TRIM26Q12899 539 aaPredicted RBP14.14□□□□□ -0.15
CLTCL1-202ENST00000427926 ZNF326Q5BKZ1 582 aaKnown RBP14.12□□□□□ -0.15
CLTCL1-202ENST00000427926 ZBTB47Q9UFB7 747 aaPredicted RBP14.1□□□□□ -0.15
CLTCL1-202ENST00000427926 LOC105371045A0A1W2PR82 267 aa14.1□□□□□ -0.15
CLTCL1-202ENST00000427926 NEFMP07197 916 aa14.08□□□□□ -0.16
CLTCL1-202ENST00000427926 ARID3CA6NKF2 412 aa14.07□□□□□ -0.16
CLTCL1-202ENST00000427926 STAG3Q9UJ98 1225 aa14.07□□□□□ -0.16
CLTCL1-202ENST00000427926 ZNF777Q9ULD5 760 aaPredicted RBP14.01□□□□□ -0.17
CLTCL1-202ENST00000427926 ZNF316A6NFI3 1004 aaPredicted RBP13.99□□□□□ -0.17
CLTCL1-202ENST00000427926 NEUROD1Q13562 356 aa13.98□□□□□ -0.17
CLTCL1-202ENST00000427926 CDK11AQ9UQ88 783 aaPredicted RBP13.96□□□□□ -0.17
CLTCL1-202ENST00000427926 BCL11AQ9H165 835 aa13.95□□□□□ -0.18
CLTCL1-202ENST00000427926 CHGAP10645 457 aaKnown RBP13.94□□□□□ -0.18
CLTCL1-202ENST00000427926 P3H3Q8IVL6 736 aa13.93□□□□□ -0.18
CLTCL1-202ENST00000427926 CANXP27824 592 aaKnown RBP13.89□□□□□ -0.19
CLTCL1-202ENST00000427926 SCAF1Q9H7N4 1312 aaKnown RBP13.88□□□□□ -0.19
CLTCL1-202ENST00000427926 RB1CC1Q8TDY2 1594 aa13.84□□□□□ -0.19
CLTCL1-202ENST00000427926 A0A0G2JS52 829 aa13.84□□□□□ -0.19
CLTCL1-202ENST00000427926 RTL5Q5HYW3 569 aaPredicted RBP13.73□□□□□ -0.21
CLTCL1-202ENST00000427926 ANP32CO43423 234 aa13.73□□□□□ -0.21
CLTCL1-202ENST00000427926 C14orf37Q86TY3 774 aa13.73□□□□□ -0.21
CLTCL1-202ENST00000427926 NPM2Q86SE8 214 aaKnown RBP13.72□□□□□ -0.21
CLTCL1-202ENST00000427926 CHMP7Q8WUX9 453 aaPredicted RBP13.71□□□□□ -0.21
CLTCL1-202ENST00000427926 NACADO15069 1562 aa13.71□□□□□ -0.21
CLTCL1-202ENST00000427926 SCRIBQ14160 1630 aa13.71□□□□□ -0.21
CLTCL1-202ENST00000427926 ZCCHC6Q5VYS8 1495 aaKnown RBP13.7□□□□□ -0.22
CLTCL1-202ENST00000427926 ARID4BQ4LE39 1312 aaPredicted RBP13.69□□□□□ -0.22
CLTCL1-202ENST00000427926 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.68□□□□□ -0.22
CLTCL1-202ENST00000427926 HAP1P54257 671 aaPredicted RBP13.68□□□□□ -0.22
CLTCL1-202ENST00000427926 PLEKHG5O94827 1062 aa13.66□□□□□ -0.22
CLTCL1-202ENST00000427926 ZBTB7CA1YPR0 619 aa13.65□□□□□ -0.22
CLTCL1-202ENST00000427926 PPP1R15AO75807 674 aaPredicted RBP13.65□□□□□ -0.22
CLTCL1-202ENST00000427926 TRHP20396 242 aaPredicted RBP13.61□□□□□ -0.23
CLTCL1-202ENST00000427926 CSRNP3Q8WYN3 585 aa13.59□□□□□ -0.23
CLTCL1-202ENST00000427926 TSPY4P0CV99 314 aa13.59□□□□□ -0.23
CLTCL1-202ENST00000427926 TSPY10P0CW01 314 aa13.59□□□□□ -0.23
CLTCL1-202ENST00000427926 DIEXFQ68CQ4 756 aaKnown RBP13.59□□□□□ -0.23
CLTCL1-202ENST00000427926 KCNH8Q96L42 1107 aa13.56□□□□□ -0.24
CLTCL1-202ENST00000427926 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
CLTCL1-202ENST00000427926 CHIC2Q9UKJ5 165 aa13.48□□□□□ -0.25
CLTCL1-202ENST00000427926 TONSLQ96HA7 1378 aa13.45□□□□□ -0.26
CLTCL1-202ENST00000427926 DCAF1Q9Y4B6 1507 aa13.45□□□□□ -0.26
CLTCL1-202ENST00000427926 ARXQ96QS3 562 aa13.44□□□□□ -0.26
CLTCL1-202ENST00000427926 HSP90AA1P07900 732 aaKnown RBP13.43□□□□□ -0.26
CLTCL1-202ENST00000427926 ERCC6Q03468 1493 aa13.42□□□□□ -0.26
CLTCL1-202ENST00000427926 LMOD2Q6P5Q4 547 aa13.41□□□□□ -0.26
CLTCL1-202ENST00000427926 KDM2AQ9Y2K7 1162 aa13.41□□□□□ -0.26
CLTCL1-202ENST00000427926 NPHP1O15259 732 aa13.41□□□□□ -0.26
CLTCL1-202ENST00000427926 PLEKHD1A6NEE1 506 aa13.41□□□□□ -0.26
CLTCL1-202ENST00000427926 GTF3C3Q9Y5Q9 886 aa13.38□□□□□ -0.27
CLTCL1-202ENST00000427926 MTUS2Q5JR59 1369 aa13.38□□□□□ -0.27
CLTCL1-202ENST00000427926 WDR43Q15061 677 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLTCL1-202ENST00000427926 CDK11BP21127 795 aaKnown RBP13.37□□□□□ -0.27
CLTCL1-202ENST00000427926 GLIPR1L2Q4G1C9 344 aa13.37□□□□□ -0.27
CLTCL1-202ENST00000427926 UPF2Q9HAU5 1272 aaKnown RBP13.34□□□□□ -0.27
CLTCL1-202ENST00000427926 SALL2Q9Y467 1007 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms