Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NIPAL3-206ENST00000475663 694 ntTSL 317.3■□□□□ 0.362e-6■■■□□ 19.2
YBX3P16989 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC17.07■□□□□ 0.322e-6■■■□□ 19.2
YBX3P16989 NIPAL3-207ENST00000488155 931 ntTSL 1 (best)15.24■□□□□ 0.032e-6■■■□□ 19.2
YBX3P16989 NIPAL3-201ENST00000003912 5481 ntTSL 1 (best) BASIC10.67□□□□□ -0.72e-6■■■□□ 19.2
YBX3P16989 HNRNPL-214ENST00000601813 593 ntTSL 518.26■□□□□ 0.515e-14■■■□□ 19.2
YBX3P16989 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC16.6■□□□□ 0.251e-6■■■□□ 19.2
YBX3P16989 PSAT1-202ENST00000376588 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.521e-6■■■□□ 19.2
YBX3P16989 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.2■□□□□ 0.982e-6■■■□□ 19.2
YBX3P16989 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.962e-6■■■□□ 19.2
YBX3P16989 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.72e-6■■■□□ 19.2
YBX3P16989 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.672e-6■■■□□ 19.2
YBX3P16989 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.2■□□□□ 0.662e-6■■■□□ 19.2
YBX3P16989 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.612e-6■■■□□ 19.2
YBX3P16989 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.592e-6■■■□□ 19.2
YBX3P16989 ENTPD6-214ENST00000463734 639 ntTSL 218.68■□□□□ 0.582e-6■■■□□ 19.2
YBX3P16989 SERPINE2-205ENST00000432738 988 ntTSL 318.2■□□□□ 0.52e-6■■■□□ 19.2
YBX3P16989 ENTPD6-218ENST00000490187 1918 ntTSL 218.18■□□□□ 0.52e-6■■■□□ 19.2
YBX3P16989 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.472e-6■■■□□ 19.2
YBX3P16989 ENTPD6-217ENST00000485936 2588 ntTSL 215.95■□□□□ 0.142e-6■■■□□ 19.2
YBX3P16989 ENTPD6-204ENST00000376666 2100 ntTSL 515.88■□□□□ 0.132e-6■■■□□ 19.2
YBX3P16989 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.092e-6■■■□□ 19.2
YBX3P16989 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.092e-6■■■□□ 19.2
YBX3P16989 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.052e-6■■■□□ 19.2
YBX3P16989 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.132e-6■■■□□ 19.2
YBX3P16989 SERPINE2-203ENST00000409840 2569 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.82e-6■■■□□ 19.2
YBX3P16989 DDB1-210ENST00000538129 475 ntTSL 27.48□□□□□ -1.219e-9■■■□□ 19.2
YBX3P16989 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.624e-7■■■□□ 19.2
YBX3P16989 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.564e-7■■■□□ 19.2
YBX3P16989 TNPO2-204ENST00000585886 2362 ntTSL 1 (best)17.26■□□□□ 0.354e-7■■■□□ 19.2
YBX3P16989 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.064e-7■■■□□ 19.2
YBX3P16989 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.274e-7■■■□□ 19.2
YBX3P16989 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.294e-7■■■□□ 19.2
YBX3P16989 ADSL-218ENST00000636265 1239 ntTSL 521.74■■□□□ 1.077e-14■■■□□ 19.2
YBX3P16989 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.073e-6■■■□□ 19.2
YBX3P16989 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC27.45■■□□□ 1.983e-6■■■□□ 19.2
YBX3P16989 MXD3-205ENST00000503473 2279 ntTSL 526.2■■□□□ 1.783e-6■■■□□ 19.2
YBX3P16989 RAB24-207ENST00000495458 1608 ntTSL 225.65■■□□□ 1.73e-6■■■□□ 19.2
YBX3P16989 RAB24-206ENST00000478234 1820 ntTSL 224.57■■□□□ 1.523e-6■■■□□ 19.2
YBX3P16989 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.423e-6■■■□□ 19.2
YBX3P16989 RAB24-205ENST00000471466 1642 ntTSL 523.65■■□□□ 1.383e-6■■■□□ 19.2
YBX3P16989 RAB24-203ENST00000393610 870 ntTSL 523■■□□□ 1.273e-6■■■□□ 19.2
YBX3P16989 BROX-207ENST00000537020 3670 ntTSL 2 BASIC11.15□□□□□ -0.623e-7■■■□□ 19.2
YBX3P16989 BROX-208ENST00000539697 3734 ntTSL 2 BASIC10.7□□□□□ -0.73e-7■■■□□ 19.2
YBX3P16989 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC9.11□□□□□ -0.953e-7■■■□□ 19.2
YBX3P16989 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.143e-7■■■□□ 19.2
YBX3P16989 MRPL37-204ENST00000487096 747 ntTSL 310.95□□□□□ -0.661e-13■■■□□ 19.2
YBX3P16989 MRPL37-205ENST00000490670 669 ntTSL 310.09□□□□□ -0.791e-13■■■□□ 19.2
YBX3P16989 HSPG2-211ENST00000486901 3586 ntTSL 212.48□□□□□ -0.418e-11■■■□□ 19.2
YBX3P16989 CYB5R3-206ENST00000438270 675 ntTSL 314.39□□□□□ -0.111e-6■■■□□ 19.2
YBX3P16989 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.5□□□□□ -0.093e-6■■■□□ 19.2
YBX3P16989 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.923e-6■■■□□ 19.2
YBX3P16989 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.498e-10■■■□□ 19.2
YBX3P16989 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC10.34□□□□□ -0.758e-10■■■□□ 19.2
YBX3P16989 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.998e-10■■■□□ 19.2
YBX3P16989 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.018e-10■■■□□ 19.2
YBX3P16989 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC8.66□□□□□ -1.028e-10■■■□□ 19.2
YBX3P16989 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.01□□□□□ -1.458e-10■■■□□ 19.2
YBX3P16989 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.72□□□□□ -1.498e-10■■■□□ 19.2
YBX3P16989 MATR3-211ENST00000505625 7306 ntTSL 1 (best)5.2□□□□□ -1.588e-10■■■□□ 19.2
YBX3P16989 RAB31-205ENST00000578734 783 ntTSL 331.46■■■□□ 2.635e-6■■■□□ 19.1
YBX3P16989 RAB31-210ENST00000581109 469 ntTSL 331.46■■■□□ 2.635e-6■■■□□ 19.1
YBX3P16989 PDS5B-207ENST00000482955 581 ntTSL 328.53■■■□□ 2.165e-6■■■□□ 19.1
YBX3P16989 TRAPPC9-215ENST00000524162 591 ntTSL 427.22■■□□□ 1.955e-6■■■□□ 19.1
YBX3P16989 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.715e-6■■■□□ 19.1
YBX3P16989 TBCB-209ENST00000589308 659 ntTSL 325.46■■□□□ 1.675e-6■■■□□ 19.1
YBX3P16989 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.65e-6■■■□□ 19.1
YBX3P16989 TBCB-208ENST00000588385 776 ntTSL 1 (best)25■■□□□ 1.595e-6■■■□□ 19.1
YBX3P16989 TBCB-205ENST00000585746 875 ntTSL 3 BASIC24.33■■□□□ 1.495e-6■■■□□ 19.1
YBX3P16989 DCAF15-206ENST00000591802 506 ntTSL 323.31■■□□□ 1.325e-6■■■□□ 19.1
YBX3P16989 TBCB-206ENST00000585910 656 ntTSL 221.76■■□□□ 1.075e-6■■■□□ 19.1
YBX3P16989 TRAPPC9-213ENST00000522504 665 ntTSL 321.38■■□□□ 1.015e-6■■■□□ 19.1
YBX3P16989 TRAPPC9-210ENST00000521667 2021 ntTSL 1 (best)20.76■□□□□ 0.915e-6■■■□□ 19.1
YBX3P16989 TRAPPC9-214ENST00000523777 705 ntTSL 320.55■□□□□ 0.885e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-205ENST00000480930 1132 ntTSL 1 (best)19.82■□□□□ 0.765e-6■■■□□ 19.1
YBX3P16989 NUP210-204ENST00000485755 474 ntTSL 519.56■□□□□ 0.725e-6■■■□□ 19.1
YBX3P16989 MYBBP1A-208ENST00000573175 898 ntTSL 319.5■□□□□ 0.715e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-209ENST00000495995 2040 ntTSL 218.75■□□□□ 0.595e-6■■■□□ 19.1
YBX3P16989 ZFAND5-208ENST00000488164 3020 ntTSL 517.3■□□□□ 0.365e-6■■■□□ 19.1
YBX3P16989 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.27■□□□□ 0.365e-6■■■□□ 19.1
YBX3P16989 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.21■□□□□ 0.355e-6■■■□□ 19.1
YBX3P16989 TRAPPC9-206ENST00000519482 551 ntTSL 416.81■□□□□ 0.285e-6■■■□□ 19.1
YBX3P16989 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.275e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-207ENST00000491577 1610 ntTSL 216.72■□□□□ 0.275e-6■■■□□ 19.1
YBX3P16989 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.245e-6■■■□□ 19.1
YBX3P16989 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.175e-6■■■□□ 19.1
YBX3P16989 GRN-202ENST00000585348 600 ntTSL 216.07■□□□□ 0.165e-6■■■□□ 19.1
YBX3P16989 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.165e-6■■■□□ 19.1
YBX3P16989 PDS5B-208ENST00000493653 972 ntTSL 1 (best)16.04■□□□□ 0.165e-6■■■□□ 19.1
YBX3P16989 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.97■□□□□ 0.151e-7■■■□□ 19.1
YBX3P16989 PTPRF-206ENST00000429895 6312 ntTSL 1 (best)15.72■□□□□ 0.119e-8■■■□□ 19.1
YBX3P16989 GRN-216ENST00000589923 437 ntTSL 215.52■□□□□ 0.085e-6■■■□□ 19.1
YBX3P16989 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.075e-6■■■□□ 19.1
YBX3P16989 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.035e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.015e-6■■■□□ 19.1
YBX3P16989 TRNAU1AP-208ENST00000495215 483 ntTSL 314.96□□□□□ -0.015e-6■■■□□ 19.1
YBX3P16989 TBCB-207ENST00000586868 466 ntTSL 3 BASIC13.83□□□□□ -0.25e-6■■■□□ 19.1
YBX3P16989 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.235e-6■■■□□ 19.1
YBX3P16989 PTPRF-215ENST00000496447 5887 ntTSL 1 (best)13.45□□□□□ -0.269e-8■■■□□ 19.1
YBX3P16989 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC13.33□□□□□ -0.275e-6■■■□□ 19.1
YBX3P16989 MAN2B2-201ENST00000285599 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.35e-6■■■□□ 19.1
Retrieved 100 of 29,075 protein–RNA pairs in 374.7 ms