RNA–Protein interactions for RNA: ENST00000488155.1

NIPAL3-207, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best)

Gene NIPAL3, Length 931 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-207ENST00000488155 NISCHQ9Y2I1 1504 aa27.98■■■□□ 2.07
NIPAL3-207ENST00000488155 CCDC180Q9P1Z9 1646 aa25.04■■□□□ 1.6
NIPAL3-207ENST00000488155 ABCC9O60706 1549 aa24.93■■□□□ 1.58
NIPAL3-207ENST00000488155 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
NIPAL3-207ENST00000488155 DCAF8L2P0C7V8 631 aa23.7■■□□□ 1.38
NIPAL3-207ENST00000488155 NACADO15069 1562 aa23.6■■□□□ 1.37
NIPAL3-207ENST00000488155 UNC13AQ9UPW8 1703 aa23.37■■□□□ 1.33
NIPAL3-207ENST00000488155 PABPN1Q86U42 306 aaKnown RBP eCLIP23.26■■□□□ 1.31
NIPAL3-207ENST00000488155 MYO15BQ96JP2 1530 aa23.24■■□□□ 1.31
NIPAL3-207ENST00000488155 DNAJC5BQ9UF47 199 aa23.22■■□□□ 1.31
NIPAL3-207ENST00000488155 ZCCHC6Q5VYS8 1495 aaKnown RBP23.21■■□□□ 1.31
NIPAL3-207ENST00000488155 BICRAQ9NZM4 1560 aa23.07■■□□□ 1.28
NIPAL3-207ENST00000488155 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
NIPAL3-207ENST00000488155 SCRIBQ14160 1630 aa22.92■■□□□ 1.26
NIPAL3-207ENST00000488155 SHROOM4Q9ULL8 1493 aa22.63■■□□□ 1.21
NIPAL3-207ENST00000488155 CC2D2AQ9P2K1 1620 aa22.52■■□□□ 1.2
NIPAL3-207ENST00000488155 EIF4G1Q04637 1599 aaKnown RBP22.49■■□□□ 1.19
NIPAL3-207ENST00000488155 CECR2Q9BXF3 1484 aa22.4■■□□□ 1.18
NIPAL3-207ENST00000488155 SMARCA4P51532 1647 aa21.82■■□□□ 1.08
NIPAL3-207ENST00000488155 NCAPD3P42695 1498 aa21.76■■□□□ 1.07
NIPAL3-207ENST00000488155 ATAD2BQ9ULI0 1458 aa21.76■■□□□ 1.07
NIPAL3-207ENST00000488155 SMARCA2P51531 1590 aa21.7■■□□□ 1.06
NIPAL3-207ENST00000488155 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
NIPAL3-207ENST00000488155 HMGXB3Q12766 1538 aa21.63■■□□□ 1.05
NIPAL3-207ENST00000488155 MROH2BQ7Z745 1585 aa21.61■■□□□ 1.05
NIPAL3-207ENST00000488155 BAZ1BQ9UIG0 1483 aaKnown RBP21.58■■□□□ 1.05
NIPAL3-207ENST00000488155 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
NIPAL3-207ENST00000488155 ERCC6Q03468 1493 aa21.49■■□□□ 1.03
NIPAL3-207ENST00000488155 NESP48681 1621 aa21.47■■□□□ 1.03
NIPAL3-207ENST00000488155 WIZO95785 1651 aa21.42■■□□□ 1.02
NIPAL3-207ENST00000488155 CUX2O14529 1486 aa21.31■■□□□ 1
NIPAL3-207ENST00000488155 LAMC3Q9Y6N6 1575 aa21.28■■□□□ 1
NIPAL3-207ENST00000488155 KIF21AQ7Z4S6 1674 aa21.26■□□□□ 0.99
NIPAL3-207ENST00000488155 RSF1Q96T23 1441 aaPredicted RBP21.19■□□□□ 0.98
NIPAL3-207ENST00000488155 THOC2Q8NI27 1593 aaKnown RBP21.19■□□□□ 0.98
NIPAL3-207ENST00000488155 PDS5BQ9NTI5 1447 aa21.13■□□□□ 0.97
NIPAL3-207ENST00000488155 CADPSQ9ULU8 1353 aa21.13■□□□□ 0.97
NIPAL3-207ENST00000488155 DNAJC5Q9H3Z4 198 aa21.13■□□□□ 0.97
NIPAL3-207ENST00000488155 TOP2AP11388 1531 aaKnown RBP21.06■□□□□ 0.96
NIPAL3-207ENST00000488155 MRC2Q9UBG0 1479 aa20.96■□□□□ 0.95
NIPAL3-207ENST00000488155 FANCD2Q9BXW9 1451 aa20.93■□□□□ 0.94
NIPAL3-207ENST00000488155 CEP164Q9UPV0 1460 aa20.93■□□□□ 0.94
NIPAL3-207ENST00000488155 CFTRP13569 1480 aa20.92■□□□□ 0.94
NIPAL3-207ENST00000488155 WDR62O43379 1518 aa20.89■□□□□ 0.94
NIPAL3-207ENST00000488155 PRDM2Q13029 1718 aa20.87■□□□□ 0.93
NIPAL3-207ENST00000488155 CCDC88BA6NC98 1476 aa20.85■□□□□ 0.93
NIPAL3-207ENST00000488155 URB2Q14146 1524 aaKnown RBP20.75■□□□□ 0.91
NIPAL3-207ENST00000488155 TOPBP1Q92547 1522 aa20.56■□□□□ 0.88
NIPAL3-207ENST00000488155 SUPT5HO00267 1087 aaKnown RBP20.52■□□□□ 0.88
NIPAL3-207ENST00000488155 ZNF608Q9ULD9 1512 aaPredicted RBP20.49■□□□□ 0.87
NIPAL3-207ENST00000488155 DNMBPQ6XZF7 1577 aa20.49■□□□□ 0.87
NIPAL3-207ENST00000488155 IFT140Q96RY7 1462 aa20.48■□□□□ 0.87
NIPAL3-207ENST00000488155 ABCC8Q09428 1581 aa20.46■□□□□ 0.87
NIPAL3-207ENST00000488155 OSCARQ8IYS5 282 aa20.42■□□□□ 0.86
NIPAL3-207ENST00000488155 TRIM41Q8WV44 630 aa20.4■□□□□ 0.86
NIPAL3-207ENST00000488155 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
NIPAL3-207ENST00000488155 TARBP1Q13395 1621 aaKnown RBP20.36■□□□□ 0.85
NIPAL3-207ENST00000488155 POLA1P09884 1462 aaPredicted RBP20.35■□□□□ 0.85
NIPAL3-207ENST00000488155 AQRO60306 1485 aaKnown RBP eCLIP20.33■□□□□ 0.85
NIPAL3-207ENST00000488155 RAD54L2Q9Y4B4 1467 aa20.32■□□□□ 0.84
NIPAL3-207ENST00000488155 CHD1O14646 1710 aa20.29■□□□□ 0.84
NIPAL3-207ENST00000488155 CUX1P39880 1505 aa20.28■□□□□ 0.84
NIPAL3-207ENST00000488155 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
NIPAL3-207ENST00000488155 SOGA1O94964 1423 aa20.27■□□□□ 0.83
NIPAL3-207ENST00000488155 TDRD9Q8NDG6 1382 aaKnown RBP20.23■□□□□ 0.83
NIPAL3-207ENST00000488155 FBLN2P98095 1184 aa20.22■□□□□ 0.83
NIPAL3-207ENST00000488155 RIMBP3CA6NJZ7 1639 aa20.19■□□□□ 0.82
NIPAL3-207ENST00000488155 RIMBP3BA6NNM3 1639 aa20.19■□□□□ 0.82
NIPAL3-207ENST00000488155 RIMBP3Q9UFD9 1639 aa20.19■□□□□ 0.82
NIPAL3-207ENST00000488155 WDR97A6NE52 1622 aa20.13■□□□□ 0.81
NIPAL3-207ENST00000488155 SNAPC4Q5SXM2 1469 aa20.11■□□□□ 0.81
NIPAL3-207ENST00000488155 ARHGEF11O15085 1522 aa20.1■□□□□ 0.81
NIPAL3-207ENST00000488155 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
NIPAL3-207ENST00000488155 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
NIPAL3-207ENST00000488155 CHMP7Q8WUX9 453 aaPredicted RBP20.04■□□□□ 0.8
NIPAL3-207ENST00000488155 GAPVD1Q14C86 1478 aa20.03■□□□□ 0.8
NIPAL3-207ENST00000488155 BIVM-ERCC5R4GMW8 1640 aa20.02■□□□□ 0.79
NIPAL3-207ENST00000488155 SYNJ1O43426 1573 aa20.01■□□□□ 0.79
NIPAL3-207ENST00000488155 MAGI1Q96QZ7 1491 aaPredicted RBP20.01■□□□□ 0.79
NIPAL3-207ENST00000488155 ABCA10Q8WWZ4 1543 aa20.01■□□□□ 0.79
NIPAL3-207ENST00000488155 WRNQ14191 1432 aaPredicted RBP eCLIP20■□□□□ 0.79
NIPAL3-207ENST00000488155 TOP2BQ02880 1626 aa19.99■□□□□ 0.79
NIPAL3-207ENST00000488155 ABCA5Q8WWZ7 1642 aa19.99■□□□□ 0.79
NIPAL3-207ENST00000488155 CYB5RLQ6IPT4 315 aa19.99■□□□□ 0.79
NIPAL3-207ENST00000488155 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
NIPAL3-207ENST00000488155 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
NIPAL3-207ENST00000488155 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
NIPAL3-207ENST00000488155 ADAMTS12P58397 1594 aa19.83■□□□□ 0.77
NIPAL3-207ENST00000488155 GRIN2AQ12879 1464 aa19.8■□□□□ 0.76
NIPAL3-207ENST00000488155 CEP170Q5SW79 1584 aa19.76■□□□□ 0.75
NIPAL3-207ENST00000488155 ERICH3Q5RHP9 1530 aa19.76■□□□□ 0.75
NIPAL3-207ENST00000488155 FHAD1B1AJZ9 1412 aa19.75■□□□□ 0.75
NIPAL3-207ENST00000488155 TRHP20396 242 aaPredicted RBP19.74■□□□□ 0.75
NIPAL3-207ENST00000488155 ERCC6L2Q5T890 1561 aa19.71■□□□□ 0.75
NIPAL3-207ENST00000488155 NUP160Q12769 1436 aa19.7■□□□□ 0.74
NIPAL3-207ENST00000488155 SHROOM2Q13796 1616 aa19.62■□□□□ 0.73
NIPAL3-207ENST00000488155 KIF27Q86VH2 1401 aa19.59■□□□□ 0.73
NIPAL3-207ENST00000488155 IGF1RP08069 1367 aa19.57■□□□□ 0.72
NIPAL3-207ENST00000488155 JPH4Q96JJ6 628 aa19.55■□□□□ 0.72
NIPAL3-207ENST00000488155 CUL7Q14999 1698 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms