RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 DCAF8L2P0C7V8 631 aa18.67■□□□□ 0.58
NIPAL3-201ENST00000003912 NISCHQ9Y2I1 1504 aa18.47■□□□□ 0.55
NIPAL3-201ENST00000003912 SUPT5HO00267 1087 aaKnown RBP17.36■□□□□ 0.37
NIPAL3-201ENST00000003912 SHROOM4Q9ULL8 1493 aa17.26■□□□□ 0.35
NIPAL3-201ENST00000003912 EHMT2Q96KQ7 1210 aa16.6■□□□□ 0.25
NIPAL3-201ENST00000003912 FAM9AQ8IZU1 332 aaPredicted RBP16.55■□□□□ 0.24
NIPAL3-201ENST00000003912 APLP2Q06481 763 aa16.49■□□□□ 0.23
NIPAL3-201ENST00000003912 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
NIPAL3-201ENST00000003912 ABCC9O60706 1549 aa16.09■□□□□ 0.17
NIPAL3-201ENST00000003912 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.17
NIPAL3-201ENST00000003912 ATP1B4Q9UN42 357 aaPredicted RBP16.02■□□□□ 0.16
NIPAL3-201ENST00000003912 UBTFP17480 764 aaKnown RBP15.99■□□□□ 0.15
NIPAL3-201ENST00000003912 TTBK1Q5TCY1 1321 aaPredicted RBP15.97■□□□□ 0.15
NIPAL3-201ENST00000003912 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
NIPAL3-201ENST00000003912 PCGF6Q9BYE7 350 aa15.68■□□□□ 0.1
NIPAL3-201ENST00000003912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.62■□□□□ 0.09
NIPAL3-201ENST00000003912 HNRNPUL2Q1KMD3 747 aaKnown RBP15.62■□□□□ 0.09
NIPAL3-201ENST00000003912 PELP1Q8IZL8 1130 aaKnown RBP15.57■□□□□ 0.08
NIPAL3-201ENST00000003912 CCER1Q8TC90 406 aaPredicted RBP15.57■□□□□ 0.08
NIPAL3-201ENST00000003912 MYT1LQ9UL68 1186 aa15.54■□□□□ 0.08
NIPAL3-201ENST00000003912 ZEB1P37275 1124 aaPredicted RBP15.51■□□□□ 0.07
NIPAL3-201ENST00000003912 CHIC1Q5VXU3 224 aa15.41■□□□□ 0.06
NIPAL3-201ENST00000003912 PPARGC1BQ86YN6 1023 aaKnown RBP15.38■□□□□ 0.05
NIPAL3-201ENST00000003912 CCDC180Q9P1Z9 1646 aa15.37■□□□□ 0.05
NIPAL3-201ENST00000003912 ITGAEP38570 1179 aa15.32■□□□□ 0.04
NIPAL3-201ENST00000003912 SCRIBQ14160 1630 aa15.3■□□□□ 0.04
NIPAL3-201ENST00000003912 FBLN2P98095 1184 aa15.27■□□□□ 0.04
NIPAL3-201ENST00000003912 LOC105371045A0A1W2PR82 267 aa15.27■□□□□ 0.03
NIPAL3-201ENST00000003912 ZCCHC6Q5VYS8 1495 aaKnown RBP15.26■□□□□ 0.03
NIPAL3-201ENST00000003912 TRIM26Q12899 539 aaPredicted RBP15.25■□□□□ 0.03
NIPAL3-201ENST00000003912 RB1CC1Q8TDY2 1594 aa15.16■□□□□ 0.02
NIPAL3-201ENST00000003912 CENPBP07199 599 aaPredicted RBP15.15■□□□□ 0.02
NIPAL3-201ENST00000003912 FAM50AQ14320 339 aaKnown RBP15.07■□□□□ 0
NIPAL3-201ENST00000003912 POLR3GLQ9BT43 218 aa15.03■□□□□ -0
NIPAL3-201ENST00000003912 NACADO15069 1562 aa14.99□□□□□ -0.01
NIPAL3-201ENST00000003912 CSRNP3Q8WYN3 585 aa14.98□□□□□ -0.01
NIPAL3-201ENST00000003912 NEFLP07196 543 aa14.96□□□□□ -0.01
NIPAL3-201ENST00000003912 TRIM52Q96A61 297 aa14.96□□□□□ -0.01
NIPAL3-201ENST00000003912 P3H3Q8IVL6 736 aa14.91□□□□□ -0.02
NIPAL3-201ENST00000003912 CDK11AQ9UQ88 783 aaPredicted RBP14.9□□□□□ -0.02
NIPAL3-201ENST00000003912 SLC4A1APQ9BWU0 796 aaKnown RBP14.89□□□□□ -0.03
NIPAL3-201ENST00000003912 YTHDC1Q96MU7 727 aaKnown RBP14.87□□□□□ -0.03
NIPAL3-201ENST00000003912 NPM1P06748 294 aaKnown RBP eCLIP14.86□□□□□ -0.03
NIPAL3-201ENST00000003912 ARID3CA6NKF2 412 aa14.85□□□□□ -0.03
NIPAL3-201ENST00000003912 ERICH6Q7L0X2 663 aa14.79□□□□□ -0.04
NIPAL3-201ENST00000003912 ZNF777Q9ULD5 760 aaPredicted RBP14.77□□□□□ -0.05
NIPAL3-201ENST00000003912 CNGB1Q14028 1251 aaPredicted RBP14.76□□□□□ -0.05
NIPAL3-201ENST00000003912 CHMP7Q8WUX9 453 aaPredicted RBP14.76□□□□□ -0.05
NIPAL3-201ENST00000003912 HRCP23327 699 aa14.74□□□□□ -0.05
NIPAL3-201ENST00000003912 NEUROD1Q13562 356 aa14.73□□□□□ -0.05
NIPAL3-201ENST00000003912 BAZ1BQ9UIG0 1483 aaKnown RBP14.73□□□□□ -0.05
NIPAL3-201ENST00000003912 ESF1Q9H501 851 aaKnown RBP14.73□□□□□ -0.05
NIPAL3-201ENST00000003912 ZNF326Q5BKZ1 582 aaKnown RBP14.69□□□□□ -0.06
NIPAL3-201ENST00000003912 BCANQ96GW7 911 aa14.69□□□□□ -0.06
NIPAL3-201ENST00000003912 DCAF1Q9Y4B6 1507 aa14.66□□□□□ -0.06
NIPAL3-201ENST00000003912 RSF1Q96T23 1441 aaPredicted RBP14.65□□□□□ -0.06
NIPAL3-201ENST00000003912 ERCC6Q03468 1493 aa14.62□□□□□ -0.07
NIPAL3-201ENST00000003912 MYT1Q01538 1121 aa14.61□□□□□ -0.07
NIPAL3-201ENST00000003912 BAZ1AQ9NRL2 1556 aaPredicted RBP14.58□□□□□ -0.07
NIPAL3-201ENST00000003912 STAG3Q9UJ98 1225 aa14.55□□□□□ -0.08
NIPAL3-201ENST00000003912 WRNQ14191 1432 aaPredicted RBP eCLIP14.51□□□□□ -0.09
NIPAL3-201ENST00000003912 EEA1Q15075 1411 aa14.49□□□□□ -0.09
NIPAL3-201ENST00000003912 TSPY4P0CV99 314 aa14.49□□□□□ -0.09
NIPAL3-201ENST00000003912 TSPY10P0CW01 314 aa14.49□□□□□ -0.09
NIPAL3-201ENST00000003912 MTUS2Q5JR59 1369 aa14.49□□□□□ -0.09
NIPAL3-201ENST00000003912 CHGAP10645 457 aaKnown RBP14.48□□□□□ -0.09
NIPAL3-201ENST00000003912 DIEXFQ68CQ4 756 aaKnown RBP14.47□□□□□ -0.09
NIPAL3-201ENST00000003912 PLPPR3Q6T4P5 718 aa14.47□□□□□ -0.09
NIPAL3-201ENST00000003912 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
NIPAL3-201ENST00000003912 DAXXQ9UER7 740 aaPredicted RBP14.45□□□□□ -0.1
NIPAL3-201ENST00000003912 ANP32CO43423 234 aa14.44□□□□□ -0.1
NIPAL3-201ENST00000003912 PLEKHD1A6NEE1 506 aa14.43□□□□□ -0.1
NIPAL3-201ENST00000003912 NEFMP07197 916 aa14.43□□□□□ -0.1
NIPAL3-201ENST00000003912 CECR2Q9BXF3 1484 aa14.42□□□□□ -0.1
NIPAL3-201ENST00000003912 CLIP1P30622 1438 aa14.42□□□□□ -0.1
NIPAL3-201ENST00000003912 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.4□□□□□ -0.1
NIPAL3-201ENST00000003912 KCNH8Q96L42 1107 aa14.4□□□□□ -0.1
NIPAL3-201ENST00000003912 CHIC2Q9UKJ5 165 aa14.4□□□□□ -0.1
NIPAL3-201ENST00000003912 GOLGA3Q08378 1498 aa14.38□□□□□ -0.11
NIPAL3-201ENST00000003912 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
NIPAL3-201ENST00000003912 TONSLQ96HA7 1378 aa14.36□□□□□ -0.11
NIPAL3-201ENST00000003912 PDS5BQ9NTI5 1447 aa14.34□□□□□ -0.11
NIPAL3-201ENST00000003912 MYO15BQ96JP2 1530 aa14.34□□□□□ -0.11
NIPAL3-201ENST00000003912 SLC24A1O60721 1099 aa14.33□□□□□ -0.11
NIPAL3-201ENST00000003912 CLSPNQ9HAW4 1339 aa14.33□□□□□ -0.12
NIPAL3-201ENST00000003912 ZNF316A6NFI3 1004 aaPredicted RBP14.3□□□□□ -0.12
NIPAL3-201ENST00000003912 CEP164Q9UPV0 1460 aa14.29□□□□□ -0.12
NIPAL3-201ENST00000003912 ZBTB47Q9UFB7 747 aaPredicted RBP14.27□□□□□ -0.12
NIPAL3-201ENST00000003912 ACIN1Q9UKV3 1341 aaKnown RBP14.25□□□□□ -0.13
NIPAL3-201ENST00000003912 CFDP1Q9UEE9 299 aaPredicted RBP14.25□□□□□ -0.13
NIPAL3-201ENST00000003912 CUX2O14529 1486 aa14.24□□□□□ -0.13
NIPAL3-201ENST00000003912 MROH2BQ7Z745 1585 aa14.24□□□□□ -0.13
NIPAL3-201ENST00000003912 ARID4BQ4LE39 1312 aaPredicted RBP14.24□□□□□ -0.13
NIPAL3-201ENST00000003912 CEP162Q5TB80 1403 aa14.24□□□□□ -0.13
NIPAL3-201ENST00000003912 CARMIL1Q5VZK9 1371 aa14.22□□□□□ -0.13
NIPAL3-201ENST00000003912 CANXP27824 592 aaKnown RBP14.21□□□□□ -0.13
NIPAL3-201ENST00000003912 TNIKQ9UKE5 1360 aa14.2□□□□□ -0.14
NIPAL3-201ENST00000003912 PPP1R15AO75807 674 aaPredicted RBP14.2□□□□□ -0.14
NIPAL3-201ENST00000003912 RRP7BPQ9NSQ0 103 aa14.2□□□□□ -0.14
NIPAL3-201ENST00000003912 CCDC88BA6NC98 1476 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms