RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 DCAF8L2P0C7V8 631 aa26.94■■□□□ 1.9
PTPRF-206ENST00000429895 SUPT5HO00267 1087 aaKnown RBP25.28■■□□□ 1.64
PTPRF-206ENST00000429895 EHMT2Q96KQ7 1210 aa25.04■■□□□ 1.6
PTPRF-206ENST00000429895 SHROOM4Q9ULL8 1493 aa24.74■■□□□ 1.55
PTPRF-206ENST00000429895 PELP1Q8IZL8 1130 aaKnown RBP24.38■■□□□ 1.49
PTPRF-206ENST00000429895 APLP2Q06481 763 aa24.31■■□□□ 1.48
PTPRF-206ENST00000429895 TTBK1Q5TCY1 1321 aaPredicted RBP24.16■■□□□ 1.46
PTPRF-206ENST00000429895 FAM9AQ8IZU1 332 aaPredicted RBP24.03■■□□□ 1.44
PTPRF-206ENST00000429895 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
PTPRF-206ENST00000429895 RANGAP1P46060 587 aaPredicted RBP23.9■■□□□ 1.42
PTPRF-206ENST00000429895 ATP1B4Q9UN42 357 aaPredicted RBP23.71■■□□□ 1.39
PTPRF-206ENST00000429895 PCGF6Q9BYE7 350 aa23.68■■□□□ 1.38
PTPRF-206ENST00000429895 ERICH6Q7L0X2 663 aa23.62■■□□□ 1.37
PTPRF-206ENST00000429895 CCER1Q8TC90 406 aaPredicted RBP23.35■■□□□ 1.33
PTPRF-206ENST00000429895 CENPBP07199 599 aaPredicted RBP23.29■■□□□ 1.32
PTPRF-206ENST00000429895 TRIM41Q8WV44 630 aa23.25■■□□□ 1.31
PTPRF-206ENST00000429895 UBTFP17480 764 aaKnown RBP23.22■■□□□ 1.31
PTPRF-206ENST00000429895 YTHDC1Q96MU7 727 aaKnown RBP23.12■■□□□ 1.29
PTPRF-206ENST00000429895 NEFLP07196 543 aa23.05■■□□□ 1.28
PTPRF-206ENST00000429895 ZEB1P37275 1124 aaPredicted RBP23.03■■□□□ 1.28
PTPRF-206ENST00000429895 PPARGC1BQ86YN6 1023 aaKnown RBP22.97■■□□□ 1.27
PTPRF-206ENST00000429895 MYT1LQ9UL68 1186 aa22.96■■□□□ 1.27
PTPRF-206ENST00000429895 POLR3GLQ9BT43 218 aa22.83■■□□□ 1.25
PTPRF-206ENST00000429895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.78■■□□□ 1.24
PTPRF-206ENST00000429895 HNRNPUL2Q1KMD3 747 aaKnown RBP22.78■■□□□ 1.24
PTPRF-206ENST00000429895 ITGAEP38570 1179 aa22.73■■□□□ 1.23
PTPRF-206ENST00000429895 CHIC1Q5VXU3 224 aa22.71■■□□□ 1.23
PTPRF-206ENST00000429895 CNGB1Q14028 1251 aaPredicted RBP22.68■■□□□ 1.22
PTPRF-206ENST00000429895 DAXXQ9UER7 740 aaPredicted RBP22.6■■□□□ 1.21
PTPRF-206ENST00000429895 MYT1Q01538 1121 aa22.59■■□□□ 1.21
PTPRF-206ENST00000429895 SLC4A1APQ9BWU0 796 aaKnown RBP22.51■■□□□ 1.19
PTPRF-206ENST00000429895 TRIM26Q12899 539 aaPredicted RBP22.29■■□□□ 1.16
PTPRF-206ENST00000429895 CLSPNQ9HAW4 1339 aa22.14■■□□□ 1.13
PTPRF-206ENST00000429895 LOC105371045A0A1W2PR82 267 aa22.13■■□□□ 1.13
PTPRF-206ENST00000429895 HRCP23327 699 aa22.12■■□□□ 1.13
PTPRF-206ENST00000429895 ZNF316A6NFI3 1004 aaPredicted RBP22.06■■□□□ 1.12
PTPRF-206ENST00000429895 FAM50AQ14320 339 aaKnown RBP22■■□□□ 1.11
PTPRF-206ENST00000429895 TRIM52Q96A61 297 aa21.97■■□□□ 1.11
PTPRF-206ENST00000429895 RTL5Q5HYW3 569 aaPredicted RBP21.89■■□□□ 1.09
PTPRF-206ENST00000429895 NEUROD1Q13562 356 aa21.86■■□□□ 1.09
PTPRF-206ENST00000429895 SLC24A1O60721 1099 aa21.84■■□□□ 1.09
PTPRF-206ENST00000429895 ZNF326Q5BKZ1 582 aaKnown RBP21.83■■□□□ 1.09
PTPRF-206ENST00000429895 BCL11AQ9H165 835 aa21.83■■□□□ 1.08
PTPRF-206ENST00000429895 FBLN2P98095 1184 aa21.73■■□□□ 1.07
PTPRF-206ENST00000429895 DIEXFQ68CQ4 756 aaKnown RBP21.73■■□□□ 1.07
PTPRF-206ENST00000429895 BCANQ96GW7 911 aa21.72■■□□□ 1.07
PTPRF-206ENST00000429895 ZBTB47Q9UFB7 747 aaPredicted RBP21.7■■□□□ 1.07
PTPRF-206ENST00000429895 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
PTPRF-206ENST00000429895 CANXP27824 592 aaKnown RBP21.57■■□□□ 1.04
PTPRF-206ENST00000429895 ARID3CA6NKF2 412 aa21.56■■□□□ 1.04
PTPRF-206ENST00000429895 ANP32CO43423 234 aa21.51■■□□□ 1.03
PTPRF-206ENST00000429895 NEFMP07197 916 aa21.44■■□□□ 1.02
PTPRF-206ENST00000429895 P3H3Q8IVL6 736 aa21.41■■□□□ 1.02
PTPRF-206ENST00000429895 PLPPR3Q6T4P5 718 aa21.41■■□□□ 1.02
PTPRF-206ENST00000429895 CDK11AQ9UQ88 783 aaPredicted RBP21.4■■□□□ 1.02
PTPRF-206ENST00000429895 ABCC9O60706 1549 aa21.4■■□□□ 1.02
PTPRF-206ENST00000429895 ZNF777Q9ULD5 760 aaPredicted RBP21.36■■□□□ 1.01
PTPRF-206ENST00000429895 GTF3C3Q9Y5Q9 886 aa21.29■■□□□ 1
PTPRF-206ENST00000429895 ESF1Q9H501 851 aaKnown RBP21.24■□□□□ 0.99
PTPRF-206ENST00000429895 NPM2Q86SE8 214 aaKnown RBP21.21■□□□□ 0.99
PTPRF-206ENST00000429895 CHGAP10645 457 aaKnown RBP21.21■□□□□ 0.99
PTPRF-206ENST00000429895 STAG3Q9UJ98 1225 aa21.17■□□□□ 0.98
PTPRF-206ENST00000429895 ANP32AP39687 249 aaKnown RBP21.08■□□□□ 0.96
PTPRF-206ENST00000429895 HSP90AA1P07900 732 aaKnown RBP21.01■□□□□ 0.95
PTPRF-206ENST00000429895 SALL2Q9Y467 1007 aaPredicted RBP20.99■□□□□ 0.95
PTPRF-206ENST00000429895 SCAF1Q9H7N4 1312 aaKnown RBP20.96■□□□□ 0.95
PTPRF-206ENST00000429895 A0A0G2JS52 829 aa20.92■□□□□ 0.94
PTPRF-206ENST00000429895 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.91■□□□□ 0.94
PTPRF-206ENST00000429895 NPM1P06748 294 aaKnown RBP eCLIP20.91■□□□□ 0.94
PTPRF-206ENST00000429895 ANP32BQ92688 251 aaKnown RBP20.91■□□□□ 0.94
PTPRF-206ENST00000429895 FAM9BQ8IZU0 186 aa20.89■□□□□ 0.94
PTPRF-206ENST00000429895 PLEKHG5O94827 1062 aa20.87■□□□□ 0.93
PTPRF-206ENST00000429895 CSRNP3Q8WYN3 585 aa20.87■□□□□ 0.93
PTPRF-206ENST00000429895 SENP3Q9H4L4 574 aaPredicted RBP20.86■□□□□ 0.93
PTPRF-206ENST00000429895 FKBP8Q14318 412 aa20.85■□□□□ 0.93
PTPRF-206ENST00000429895 TONSLQ96HA7 1378 aa20.84■□□□□ 0.93
PTPRF-206ENST00000429895 UPF2Q9HAU5 1272 aaKnown RBP20.83■□□□□ 0.92
PTPRF-206ENST00000429895 HNRNPUQ00839 825 aaKnown RBP eCLIP20.82■□□□□ 0.92
PTPRF-206ENST00000429895 CHIC2Q9UKJ5 165 aa20.81■□□□□ 0.92
PTPRF-206ENST00000429895 ZBTB7CA1YPR0 619 aa20.81■□□□□ 0.92
PTPRF-206ENST00000429895 EIF5BO60841 1220 aaKnown RBP20.81■□□□□ 0.92
PTPRF-206ENST00000429895 ARXQ96QS3 562 aa20.77■□□□□ 0.91
PTPRF-206ENST00000429895 ACIN1Q9UKV3 1341 aaKnown RBP20.76■□□□□ 0.91
PTPRF-206ENST00000429895 DDX10Q13206 875 aaKnown RBP20.75■□□□□ 0.91
PTPRF-206ENST00000429895 KDM2AQ9Y2K7 1162 aa20.74■□□□□ 0.91
PTPRF-206ENST00000429895 WDR43Q15061 677 aaKnown RBP eCLIP20.69■□□□□ 0.9
PTPRF-206ENST00000429895 TMC1Q8TDI8 760 aa20.69■□□□□ 0.9
PTPRF-206ENST00000429895 C14orf37Q86TY3 774 aa20.68■□□□□ 0.9
PTPRF-206ENST00000429895 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.65■□□□□ 0.9
PTPRF-206ENST00000429895 CCDC136Q96JN2 1154 aa20.62■□□□□ 0.89
PTPRF-206ENST00000429895 NBR1Q14596 966 aa20.62■□□□□ 0.89
PTPRF-206ENST00000429895 CDK11BP21127 795 aaKnown RBP20.56■□□□□ 0.88
PTPRF-206ENST00000429895 TSPY4P0CV99 314 aa20.55■□□□□ 0.88
PTPRF-206ENST00000429895 TSPY10P0CW01 314 aa20.55■□□□□ 0.88
PTPRF-206ENST00000429895 MYH16Q9H6N6 1097 aa20.55■□□□□ 0.88
PTPRF-206ENST00000429895 IRX6P78412 446 aaPredicted RBP20.54■□□□□ 0.88
PTPRF-206ENST00000429895 MRS2Q9HD23 443 aa20.53■□□□□ 0.88
PTPRF-206ENST00000429895 PPP1R15AO75807 674 aaPredicted RBP20.53■□□□□ 0.88
PTPRF-206ENST00000429895 HIRIP3Q9BW71 556 aaPredicted RBP20.53■□□□□ 0.88
PTPRF-206ENST00000429895 CHMP7Q8WUX9 453 aaPredicted RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms