RNA–Protein interactions for RNA: ENST00000475663.2

NIPAL3-206, Transcript of NIPA like domain containing 3, humanhuman

TSL 3

Gene NIPAL3, Length 694 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-206ENST00000475663 NISCHQ9Y2I1 1504 aa32.12■■■□□ 2.73
NIPAL3-206ENST00000475663 CCDC180Q9P1Z9 1646 aa28.47■■■□□ 2.15
NIPAL3-206ENST00000475663 ABCC9O60706 1549 aa28.26■■■□□ 2.11
NIPAL3-206ENST00000475663 DCAF8L2P0C7V8 631 aa27.12■■□□□ 1.93
NIPAL3-206ENST00000475663 RB1CC1Q8TDY2 1594 aa26.94■■□□□ 1.9
NIPAL3-206ENST00000475663 NACADO15069 1562 aa26.86■■□□□ 1.89
NIPAL3-206ENST00000475663 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
NIPAL3-206ENST00000475663 MYO15BQ96JP2 1530 aa26.58■■□□□ 1.85
NIPAL3-206ENST00000475663 PABPN1Q86U42 306 aaKnown RBP eCLIP26.46■■□□□ 1.83
NIPAL3-206ENST00000475663 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
NIPAL3-206ENST00000475663 UNC13AQ9UPW8 1703 aa26.32■■□□□ 1.8
NIPAL3-206ENST00000475663 BICRAQ9NZM4 1560 aa26.2■■□□□ 1.79
NIPAL3-206ENST00000475663 SCRIBQ14160 1630 aa26.17■■□□□ 1.78
NIPAL3-206ENST00000475663 DNAJC5BQ9UF47 199 aa26.14■■□□□ 1.78
NIPAL3-206ENST00000475663 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
NIPAL3-206ENST00000475663 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
NIPAL3-206ENST00000475663 CC2D2AQ9P2K1 1620 aa25.45■■□□□ 1.67
NIPAL3-206ENST00000475663 CECR2Q9BXF3 1484 aa25.34■■□□□ 1.65
NIPAL3-206ENST00000475663 SMARCA4P51532 1647 aa24.94■■□□□ 1.58
NIPAL3-206ENST00000475663 ATAD2BQ9ULI0 1458 aa24.88■■□□□ 1.57
NIPAL3-206ENST00000475663 BAZ1AQ9NRL2 1556 aaPredicted RBP24.86■■□□□ 1.57
NIPAL3-206ENST00000475663 NCAPD3P42695 1498 aa24.83■■□□□ 1.57
NIPAL3-206ENST00000475663 MROH2BQ7Z745 1585 aa24.82■■□□□ 1.56
NIPAL3-206ENST00000475663 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
NIPAL3-206ENST00000475663 BAZ1BQ9UIG0 1483 aaKnown RBP24.66■■□□□ 1.54
NIPAL3-206ENST00000475663 HMGXB3Q12766 1538 aa24.66■■□□□ 1.54
NIPAL3-206ENST00000475663 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
NIPAL3-206ENST00000475663 WIZO95785 1651 aa24.53■■□□□ 1.52
NIPAL3-206ENST00000475663 RSF1Q96T23 1441 aaPredicted RBP24.48■■□□□ 1.51
NIPAL3-206ENST00000475663 NESP48681 1621 aa24.42■■□□□ 1.5
NIPAL3-206ENST00000475663 ERCC6Q03468 1493 aa24.31■■□□□ 1.48
NIPAL3-206ENST00000475663 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
NIPAL3-206ENST00000475663 LAMC3Q9Y6N6 1575 aa24.16■■□□□ 1.46
NIPAL3-206ENST00000475663 CADPSQ9ULU8 1353 aa24.15■■□□□ 1.46
NIPAL3-206ENST00000475663 PDS5BQ9NTI5 1447 aa24.05■■□□□ 1.44
NIPAL3-206ENST00000475663 CUX2O14529 1486 aa24■■□□□ 1.43
NIPAL3-206ENST00000475663 KIF21AQ7Z4S6 1674 aa24■■□□□ 1.43
NIPAL3-206ENST00000475663 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
NIPAL3-206ENST00000475663 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.43
NIPAL3-206ENST00000475663 CFTRP13569 1480 aa23.94■■□□□ 1.42
NIPAL3-206ENST00000475663 SUPT5HO00267 1087 aaKnown RBP23.92■■□□□ 1.42
NIPAL3-206ENST00000475663 FANCD2Q9BXW9 1451 aa23.88■■□□□ 1.41
NIPAL3-206ENST00000475663 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
NIPAL3-206ENST00000475663 MRC2Q9UBG0 1479 aa23.83■■□□□ 1.41
NIPAL3-206ENST00000475663 WDR62O43379 1518 aa23.73■■□□□ 1.39
NIPAL3-206ENST00000475663 URB2Q14146 1524 aaKnown RBP23.68■■□□□ 1.38
NIPAL3-206ENST00000475663 PRDM2Q13029 1718 aa23.61■■□□□ 1.37
NIPAL3-206ENST00000475663 DNAJC5Q9H3Z4 198 aa23.53■■□□□ 1.36
NIPAL3-206ENST00000475663 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
NIPAL3-206ENST00000475663 DNMBPQ6XZF7 1577 aa23.4■■□□□ 1.34
NIPAL3-206ENST00000475663 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
NIPAL3-206ENST00000475663 ZNF608Q9ULD9 1512 aaPredicted RBP23.34■■□□□ 1.33
NIPAL3-206ENST00000475663 IFT140Q96RY7 1462 aa23.33■■□□□ 1.33
NIPAL3-206ENST00000475663 POLA1P09884 1462 aaPredicted RBP23.28■■□□□ 1.32
NIPAL3-206ENST00000475663 CUX1P39880 1505 aa23.28■■□□□ 1.32
NIPAL3-206ENST00000475663 RAD54L2Q9Y4B4 1467 aa23.26■■□□□ 1.31
NIPAL3-206ENST00000475663 FGD5Q6ZNL6 1462 aa23.22■■□□□ 1.31
NIPAL3-206ENST00000475663 SOGA1O94964 1423 aa23.21■■□□□ 1.31
NIPAL3-206ENST00000475663 AQRO60306 1485 aaKnown RBP eCLIP23.21■■□□□ 1.31
NIPAL3-206ENST00000475663 TARBP1Q13395 1621 aaKnown RBP23.19■■□□□ 1.3
NIPAL3-206ENST00000475663 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
NIPAL3-206ENST00000475663 EIF4G3O43432 1585 aaKnown RBP23.15■■□□□ 1.3
NIPAL3-206ENST00000475663 OSCARQ8IYS5 282 aa23.08■■□□□ 1.29
NIPAL3-206ENST00000475663 WRNQ14191 1432 aaPredicted RBP eCLIP23.07■■□□□ 1.28
NIPAL3-206ENST00000475663 SYNJ1O43426 1573 aa23.02■■□□□ 1.28
NIPAL3-206ENST00000475663 FBLN2P98095 1184 aa23.02■■□□□ 1.28
NIPAL3-206ENST00000475663 TOP2BQ02880 1626 aa22.97■■□□□ 1.27
NIPAL3-206ENST00000475663 SNAPC4Q5SXM2 1469 aa22.95■■□□□ 1.26
NIPAL3-206ENST00000475663 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
NIPAL3-206ENST00000475663 ABCA10Q8WWZ4 1543 aa22.93■■□□□ 1.26
NIPAL3-206ENST00000475663 WDR97A6NE52 1622 aa22.93■■□□□ 1.26
NIPAL3-206ENST00000475663 GAPVD1Q14C86 1478 aa22.91■■□□□ 1.26
NIPAL3-206ENST00000475663 GRIN2BQ13224 1484 aa22.9■■□□□ 1.26
NIPAL3-206ENST00000475663 CHD1O14646 1710 aa22.87■■□□□ 1.25
NIPAL3-206ENST00000475663 CHMP7Q8WUX9 453 aaPredicted RBP22.85■■□□□ 1.25
NIPAL3-206ENST00000475663 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
NIPAL3-206ENST00000475663 ABCA5Q8WWZ7 1642 aa22.83■■□□□ 1.25
NIPAL3-206ENST00000475663 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
NIPAL3-206ENST00000475663 PBRM1Q86U86 1689 aa22.79■■□□□ 1.24
NIPAL3-206ENST00000475663 SYNJ2O15056 1496 aa22.76■■□□□ 1.23
NIPAL3-206ENST00000475663 RIMBP3CA6NJZ7 1639 aa22.69■■□□□ 1.22
NIPAL3-206ENST00000475663 RIMBP3BA6NNM3 1639 aa22.69■■□□□ 1.22
NIPAL3-206ENST00000475663 RIMBP3Q9UFD9 1639 aa22.69■■□□□ 1.22
NIPAL3-206ENST00000475663 ARHGEF11O15085 1522 aa22.68■■□□□ 1.22
NIPAL3-206ENST00000475663 ADAMTS12P58397 1594 aa22.65■■□□□ 1.22
NIPAL3-206ENST00000475663 CLASP1Q7Z460 1538 aa22.62■■□□□ 1.21
NIPAL3-206ENST00000475663 FHAD1B1AJZ9 1412 aa22.62■■□□□ 1.21
NIPAL3-206ENST00000475663 ERICH3Q5RHP9 1530 aa22.62■■□□□ 1.21
NIPAL3-206ENST00000475663 GRIN2AQ12879 1464 aa22.61■■□□□ 1.21
NIPAL3-206ENST00000475663 CYB5RLQ6IPT4 315 aa22.59■■□□□ 1.21
NIPAL3-206ENST00000475663 KIF27Q86VH2 1401 aa22.57■■□□□ 1.2
NIPAL3-206ENST00000475663 IGF1RP08069 1367 aa22.55■■□□□ 1.2
NIPAL3-206ENST00000475663 CEP170Q5SW79 1584 aa22.53■■□□□ 1.2
NIPAL3-206ENST00000475663 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
NIPAL3-206ENST00000475663 NUP160Q12769 1436 aa22.5■■□□□ 1.19
NIPAL3-206ENST00000475663 RUSC2Q8N2Y8 1516 aa22.46■■□□□ 1.19
NIPAL3-206ENST00000475663 ERCC6L2Q5T890 1561 aa22.42■■□□□ 1.18
NIPAL3-206ENST00000475663 CARMIL1Q5VZK9 1371 aa22.4■■□□□ 1.18
NIPAL3-206ENST00000475663 CUL7Q14999 1698 aa22.36■■□□□ 1.17
NIPAL3-206ENST00000475663 JPH4Q96JJ6 628 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms