RNA–Protein interactions for RNA: ENST00000589923.1

GRN-216, Transcript of granulin precursor, humanhuman

TSL 2

Gene GRN, Length 437 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRN-216ENST00000589923 NISCHQ9Y2I1 1504 aa28■■■□□ 2.07
GRN-216ENST00000589923 ABCC9O60706 1549 aa25.53■■□□□ 1.68
GRN-216ENST00000589923 CCDC180Q9P1Z9 1646 aa25.28■■□□□ 1.64
GRN-216ENST00000589923 DNAJC5BQ9UF47 199 aa24.25■■□□□ 1.47
GRN-216ENST00000589923 RB1CC1Q8TDY2 1594 aa24.15■■□□□ 1.46
GRN-216ENST00000589923 NACADO15069 1562 aa23.91■■□□□ 1.42
GRN-216ENST00000589923 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
GRN-216ENST00000589923 PABPN1Q86U42 306 aaKnown RBP eCLIP23.68■■□□□ 1.38
GRN-216ENST00000589923 BICRAQ9NZM4 1560 aa23.58■■□□□ 1.37
GRN-216ENST00000589923 DCAF8L2P0C7V8 631 aa23.57■■□□□ 1.36
GRN-216ENST00000589923 MYO15BQ96JP2 1530 aa23.51■■□□□ 1.35
GRN-216ENST00000589923 ZCCHC6Q5VYS8 1495 aaKnown RBP23.18■■□□□ 1.3
GRN-216ENST00000589923 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
GRN-216ENST00000589923 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
GRN-216ENST00000589923 CC2D2AQ9P2K1 1620 aa23.08■■□□□ 1.29
GRN-216ENST00000589923 SCRIBQ14160 1630 aa23.02■■□□□ 1.28
GRN-216ENST00000589923 CECR2Q9BXF3 1484 aa23.01■■□□□ 1.27
GRN-216ENST00000589923 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
GRN-216ENST00000589923 DNAJC5Q9H3Z4 198 aa22.39■■□□□ 1.17
GRN-216ENST00000589923 CUX2O14529 1486 aa22.09■■□□□ 1.13
GRN-216ENST00000589923 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
GRN-216ENST00000589923 ATAD2BQ9ULI0 1458 aa22■■□□□ 1.11
GRN-216ENST00000589923 ERCC6Q03468 1493 aa21.99■■□□□ 1.11
GRN-216ENST00000589923 SMARCA4P51532 1647 aa21.94■■□□□ 1.1
GRN-216ENST00000589923 HMGXB3Q12766 1538 aa21.93■■□□□ 1.1
GRN-216ENST00000589923 NESP48681 1621 aa21.9■■□□□ 1.1
GRN-216ENST00000589923 SMARCA2P51531 1590 aa21.88■■□□□ 1.09
GRN-216ENST00000589923 THOC2Q8NI27 1593 aaKnown RBP21.78■■□□□ 1.08
GRN-216ENST00000589923 BAZ1BQ9UIG0 1483 aaKnown RBP21.74■■□□□ 1.07
GRN-216ENST00000589923 PEG3Q9GZU2 1588 aa21.74■■□□□ 1.07
GRN-216ENST00000589923 BAZ1AQ9NRL2 1556 aaPredicted RBP21.73■■□□□ 1.07
GRN-216ENST00000589923 LAMC3Q9Y6N6 1575 aa21.64■■□□□ 1.05
GRN-216ENST00000589923 KIF21AQ7Z4S6 1674 aa21.63■■□□□ 1.05
GRN-216ENST00000589923 MROH2BQ7Z745 1585 aa21.61■■□□□ 1.05
GRN-216ENST00000589923 PDS5BQ9NTI5 1447 aa21.46■■□□□ 1.03
GRN-216ENST00000589923 CADPSQ9ULU8 1353 aa21.37■■□□□ 1.01
GRN-216ENST00000589923 WDR62O43379 1518 aa21.36■■□□□ 1.01
GRN-216ENST00000589923 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
GRN-216ENST00000589923 WIZO95785 1651 aa21.34■■□□□ 1.01
GRN-216ENST00000589923 TRIM41Q8WV44 630 aa21.24■□□□□ 0.99
GRN-216ENST00000589923 CEP164Q9UPV0 1460 aa21.2■□□□□ 0.98
GRN-216ENST00000589923 FANCD2Q9BXW9 1451 aa21.16■□□□□ 0.98
GRN-216ENST00000589923 CFTRP13569 1480 aa21.11■□□□□ 0.97
GRN-216ENST00000589923 URB2Q14146 1524 aaKnown RBP21.07■□□□□ 0.96
GRN-216ENST00000589923 TOP2AP11388 1531 aaKnown RBP21.02■□□□□ 0.96
GRN-216ENST00000589923 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
GRN-216ENST00000589923 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
GRN-216ENST00000589923 PRDM2Q13029 1718 aa20.93■□□□□ 0.94
GRN-216ENST00000589923 RIMBP3CA6NJZ7 1639 aa20.86■□□□□ 0.93
GRN-216ENST00000589923 RIMBP3BA6NNM3 1639 aa20.86■□□□□ 0.93
GRN-216ENST00000589923 RIMBP3Q9UFD9 1639 aa20.86■□□□□ 0.93
GRN-216ENST00000589923 ZNF608Q9ULD9 1512 aaPredicted RBP20.85■□□□□ 0.93
GRN-216ENST00000589923 CCDC88BA6NC98 1476 aa20.77■□□□□ 0.92
GRN-216ENST00000589923 IFT140Q96RY7 1462 aa20.77■□□□□ 0.92
GRN-216ENST00000589923 TOPBP1Q92547 1522 aa20.75■□□□□ 0.91
GRN-216ENST00000589923 ARHGEF11O15085 1522 aa20.74■□□□□ 0.91
GRN-216ENST00000589923 EIF4G3O43432 1585 aaKnown RBP20.73■□□□□ 0.91
GRN-216ENST00000589923 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.9
GRN-216ENST00000589923 DNMBPQ6XZF7 1577 aa20.64■□□□□ 0.9
GRN-216ENST00000589923 CHD1O14646 1710 aa20.64■□□□□ 0.89
GRN-216ENST00000589923 ABCC8Q09428 1581 aa20.59■□□□□ 0.89
GRN-216ENST00000589923 AQRO60306 1485 aaKnown RBP eCLIP20.57■□□□□ 0.884e-6■■■■□ 21.9
GRN-216ENST00000589923 ARAP1Q96P48 1450 aa20.55■□□□□ 0.88
GRN-216ENST00000589923 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
GRN-216ENST00000589923 CYB5RLQ6IPT4 315 aa20.49■□□□□ 0.87
GRN-216ENST00000589923 RAD54L2Q9Y4B4 1467 aa20.45■□□□□ 0.86
GRN-216ENST00000589923 CLASP1Q7Z460 1538 aa20.4■□□□□ 0.86
GRN-216ENST00000589923 TDRD9Q8NDG6 1382 aaKnown RBP20.37■□□□□ 0.85
GRN-216ENST00000589923 FBLN2P98095 1184 aa20.37■□□□□ 0.85
GRN-216ENST00000589923 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
GRN-216ENST00000589923 FGD5Q6ZNL6 1462 aa20.35■□□□□ 0.85
GRN-216ENST00000589923 SOGA1O94964 1423 aa20.35■□□□□ 0.85
GRN-216ENST00000589923 WDR97A6NE52 1622 aa20.34■□□□□ 0.85
GRN-216ENST00000589923 CUX1P39880 1505 aa20.32■□□□□ 0.84
GRN-216ENST00000589923 TRHP20396 242 aaPredicted RBP20.31■□□□□ 0.84
GRN-216ENST00000589923 MAGI1Q96QZ7 1491 aaPredicted RBP20.27■□□□□ 0.84
GRN-216ENST00000589923 SYNJ1O43426 1573 aa20.26■□□□□ 0.83
GRN-216ENST00000589923 GRIN2BQ13224 1484 aa20.23■□□□□ 0.83
GRN-216ENST00000589923 SYNJ2O15056 1496 aa20.21■□□□□ 0.83
GRN-216ENST00000589923 PBRM1Q86U86 1689 aa20.21■□□□□ 0.83
GRN-216ENST00000589923 CHMP7Q8WUX9 453 aaPredicted RBP20.17■□□□□ 0.82
GRN-216ENST00000589923 ABCA5Q8WWZ7 1642 aa20.15■□□□□ 0.82
GRN-216ENST00000589923 GAPVD1Q14C86 1478 aa20.12■□□□□ 0.81
GRN-216ENST00000589923 ABCA10Q8WWZ4 1543 aa20.09■□□□□ 0.81
GRN-216ENST00000589923 ERCC6L2Q5T890 1561 aa20.08■□□□□ 0.81
GRN-216ENST00000589923 ADAMTS12P58397 1594 aa20■□□□□ 0.79
GRN-216ENST00000589923 CEP170Q5SW79 1584 aa20■□□□□ 0.79
GRN-216ENST00000589923 GRIN2AQ12879 1464 aa20■□□□□ 0.79
GRN-216ENST00000589923 NUP160Q12769 1436 aa19.97■□□□□ 0.79
GRN-216ENST00000589923 SHROOM2Q13796 1616 aa19.95■□□□□ 0.78
GRN-216ENST00000589923 BIVM-ERCC5R4GMW8 1640 aa19.92■□□□□ 0.78
GRN-216ENST00000589923 TOP2BQ02880 1626 aa19.89■□□□□ 0.77
GRN-216ENST00000589923 WRNQ14191 1432 aaPredicted RBP eCLIP19.88■□□□□ 0.77
GRN-216ENST00000589923 AEBP2Q6ZN18 517 aaPredicted RBP19.88■□□□□ 0.77
GRN-216ENST00000589923 KIF13AQ9H1H9 1805 aa19.86■□□□□ 0.77
GRN-216ENST00000589923 FHAD1B1AJZ9 1412 aa19.85■□□□□ 0.77
GRN-216ENST00000589923 ERICH3Q5RHP9 1530 aa19.82■□□□□ 0.76
GRN-216ENST00000589923 RUSC2Q8N2Y8 1516 aa19.75■□□□□ 0.75
GRN-216ENST00000589923 SUPT5HO00267 1087 aaKnown RBP19.74■□□□□ 0.75
GRN-216ENST00000589923 PRG4Q92954 1404 aaPredicted RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms