RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 DCAF8L2P0C7V8 631 aa23.21■■□□□ 1.31
PTPRF-215ENST00000496447 NISCHQ9Y2I1 1504 aa21.74■■□□□ 1.07
PTPRF-215ENST00000496447 SUPT5HO00267 1087 aaKnown RBP21.71■■□□□ 1.07
PTPRF-215ENST00000496447 SHROOM4Q9ULL8 1493 aa21.36■■□□□ 1.01
PTPRF-215ENST00000496447 EHMT2Q96KQ7 1210 aa21.12■□□□□ 0.97
PTPRF-215ENST00000496447 APLP2Q06481 763 aa20.8■□□□□ 0.92
PTPRF-215ENST00000496447 PELP1Q8IZL8 1130 aaKnown RBP20.72■□□□□ 0.91
PTPRF-215ENST00000496447 FAM9AQ8IZU1 332 aaPredicted RBP20.7■□□□□ 0.9
PTPRF-215ENST00000496447 MYT1Q01538 1121 aa20.63■□□□□ 0.89
PTPRF-215ENST00000496447 TTBK1Q5TCY1 1321 aaPredicted RBP20.37■□□□□ 0.85
PTPRF-215ENST00000496447 RANGAP1P46060 587 aaPredicted RBP20.3■□□□□ 0.84
PTPRF-215ENST00000496447 ATP1B4Q9UN42 357 aaPredicted RBP20.19■□□□□ 0.82
PTPRF-215ENST00000496447 TRIM41Q8WV44 630 aa20.13■□□□□ 0.81
PTPRF-215ENST00000496447 PCGF6Q9BYE7 350 aa20.02■□□□□ 0.8
PTPRF-215ENST00000496447 UBTFP17480 764 aaKnown RBP19.98■□□□□ 0.79
PTPRF-215ENST00000496447 CENPBP07199 599 aaPredicted RBP19.85■□□□□ 0.77
PTPRF-215ENST00000496447 CCER1Q8TC90 406 aaPredicted RBP19.81■□□□□ 0.76
PTPRF-215ENST00000496447 ZEB1P37275 1124 aaPredicted RBP19.7■□□□□ 0.74
PTPRF-215ENST00000496447 ERICH6Q7L0X2 663 aa19.59■□□□□ 0.73
PTPRF-215ENST00000496447 MYT1LQ9UL68 1186 aa19.58■□□□□ 0.73
PTPRF-215ENST00000496447 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.55■□□□□ 0.72
PTPRF-215ENST00000496447 HNRNPUL2Q1KMD3 747 aaKnown RBP19.55■□□□□ 0.72
PTPRF-215ENST00000496447 PPARGC1BQ86YN6 1023 aaKnown RBP19.46■□□□□ 0.71
PTPRF-215ENST00000496447 NEFLP07196 543 aa19.37■□□□□ 0.69
PTPRF-215ENST00000496447 ITGAEP38570 1179 aa19.35■□□□□ 0.69
PTPRF-215ENST00000496447 HRCP23327 699 aa19.32■□□□□ 0.68
PTPRF-215ENST00000496447 YTHDC1Q96MU7 727 aaKnown RBP19.28■□□□□ 0.68
PTPRF-215ENST00000496447 POLR3GLQ9BT43 218 aa19.23■□□□□ 0.67
PTPRF-215ENST00000496447 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
PTPRF-215ENST00000496447 TRIM26Q12899 539 aaPredicted RBP19.14■□□□□ 0.66
PTPRF-215ENST00000496447 ABCC9O60706 1549 aa19.14■□□□□ 0.65
PTPRF-215ENST00000496447 PABPN1Q86U42 306 aaKnown RBP eCLIP19.13■□□□□ 0.65
PTPRF-215ENST00000496447 LOC105371045A0A1W2PR82 267 aa19.02■□□□□ 0.64
PTPRF-215ENST00000496447 SLC4A1APQ9BWU0 796 aaKnown RBP19■□□□□ 0.63
PTPRF-215ENST00000496447 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
PTPRF-215ENST00000496447 FAM50AQ14320 339 aaKnown RBP18.87■□□□□ 0.61
PTPRF-215ENST00000496447 DAXXQ9UER7 740 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-215ENST00000496447 FBLN2P98095 1184 aa18.84■□□□□ 0.61
PTPRF-215ENST00000496447 TRIM52Q96A61 297 aa18.8■□□□□ 0.6
PTPRF-215ENST00000496447 NEUROD1Q13562 356 aa18.61■□□□□ 0.57
PTPRF-215ENST00000496447 ZNF326Q5BKZ1 582 aaKnown RBP18.58■□□□□ 0.57
PTPRF-215ENST00000496447 CLSPNQ9HAW4 1339 aa18.55■□□□□ 0.56
PTPRF-215ENST00000496447 ARID3CA6NKF2 412 aa18.51■□□□□ 0.55
PTPRF-215ENST00000496447 BCANQ96GW7 911 aa18.5■□□□□ 0.55
PTPRF-215ENST00000496447 P3H3Q8IVL6 736 aa18.48■□□□□ 0.55
PTPRF-215ENST00000496447 GTF3C3Q9Y5Q9 886 aa18.47■□□□□ 0.55
PTPRF-215ENST00000496447 RTL5Q5HYW3 569 aaPredicted RBP18.43■□□□□ 0.54
PTPRF-215ENST00000496447 DIEXFQ68CQ4 756 aaKnown RBP18.43■□□□□ 0.54
PTPRF-215ENST00000496447 ZNF316A6NFI3 1004 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-215ENST00000496447 ZNF777Q9ULD5 760 aaPredicted RBP18.39■□□□□ 0.53
PTPRF-215ENST00000496447 SLC24A1O60721 1099 aa18.37■□□□□ 0.53
PTPRF-215ENST00000496447 ESF1Q9H501 851 aaKnown RBP18.34■□□□□ 0.53
PTPRF-215ENST00000496447 CDK11AQ9UQ88 783 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-215ENST00000496447 ZBTB47Q9UFB7 747 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-215ENST00000496447 ANP32CO43423 234 aa18.32■□□□□ 0.52
PTPRF-215ENST00000496447 CSRNP3Q8WYN3 585 aa18.32■□□□□ 0.52
PTPRF-215ENST00000496447 ACIN1Q9UKV3 1341 aaKnown RBP18.31■□□□□ 0.52
PTPRF-215ENST00000496447 NEFMP07197 916 aa18.29■□□□□ 0.52
PTPRF-215ENST00000496447 SCRIBQ14160 1630 aa18.27■□□□□ 0.51
PTPRF-215ENST00000496447 NPM1P06748 294 aaKnown RBP eCLIP18.26■□□□□ 0.51
PTPRF-215ENST00000496447 CANXP27824 592 aaKnown RBP18.21■□□□□ 0.51
PTPRF-215ENST00000496447 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
PTPRF-215ENST00000496447 STAG3Q9UJ98 1225 aa18.2■□□□□ 0.5
PTPRF-215ENST00000496447 BCL11AQ9H165 835 aa18.17■□□□□ 0.5
PTPRF-215ENST00000496447 CHGAP10645 457 aaKnown RBP18.16■□□□□ 0.5
PTPRF-215ENST00000496447 CHMP7Q8WUX9 453 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-215ENST00000496447 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.97■□□□□ 0.47
PTPRF-215ENST00000496447 TONSLQ96HA7 1378 aa17.96■□□□□ 0.47
PTPRF-215ENST00000496447 SCAF1Q9H7N4 1312 aaKnown RBP17.94■□□□□ 0.46
PTPRF-215ENST00000496447 CHIC2Q9UKJ5 165 aa17.93■□□□□ 0.46
PTPRF-215ENST00000496447 ZCCHC6Q5VYS8 1495 aaKnown RBP17.91■□□□□ 0.46
PTPRF-215ENST00000496447 TSPY4P0CV99 314 aa17.9■□□□□ 0.46
PTPRF-215ENST00000496447 TSPY10P0CW01 314 aa17.9■□□□□ 0.46
PTPRF-215ENST00000496447 GLIPR1L2Q4G1C9 344 aa17.88■□□□□ 0.45
PTPRF-215ENST00000496447 MTUS2Q5JR59 1369 aa17.82■□□□□ 0.44
PTPRF-215ENST00000496447 EIF5BO60841 1220 aaKnown RBP17.78■□□□□ 0.44
PTPRF-215ENST00000496447 RB1CC1Q8TDY2 1594 aa17.77■□□□□ 0.44
PTPRF-215ENST00000496447 KDM2AQ9Y2K7 1162 aa17.76■□□□□ 0.43
PTPRF-215ENST00000496447 KCNH8Q96L42 1107 aa17.76■□□□□ 0.43
PTPRF-215ENST00000496447 CCDC180Q9P1Z9 1646 aa17.74■□□□□ 0.43
PTPRF-215ENST00000496447 ANP32AP39687 249 aaKnown RBP17.72■□□□□ 0.43
PTPRF-215ENST00000496447 FAM9BQ8IZU0 186 aa17.72■□□□□ 0.43
PTPRF-215ENST00000496447 PPP1R15AO75807 674 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-215ENST00000496447 SALL2Q9Y467 1007 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-215ENST00000496447 DDX10Q13206 875 aaKnown RBP17.7■□□□□ 0.42
PTPRF-215ENST00000496447 NPM2Q86SE8 214 aaKnown RBP17.69■□□□□ 0.42
PTPRF-215ENST00000496447 HNRNPUQ00839 825 aaKnown RBP eCLIP17.69■□□□□ 0.42
PTPRF-215ENST00000496447 A0A0G2JS52 829 aa17.69■□□□□ 0.42
PTPRF-215ENST00000496447 PLEKHD1A6NEE1 506 aa17.68■□□□□ 0.42
PTPRF-215ENST00000496447 WDR43Q15061 677 aaKnown RBP eCLIP17.67■□□□□ 0.42
PTPRF-215ENST00000496447 TMC1Q8TDI8 760 aa17.67■□□□□ 0.42
PTPRF-215ENST00000496447 SENP3Q9H4L4 574 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-215ENST00000496447 ANP32EQ9BTT0 268 aa17.67■□□□□ 0.42
PTPRF-215ENST00000496447 C14orf37Q86TY3 774 aa17.65■□□□□ 0.42
PTPRF-215ENST00000496447 HSP90AA1P07900 732 aaKnown RBP17.64■□□□□ 0.42
PTPRF-215ENST00000496447 ZBTB7CA1YPR0 619 aa17.64■□□□□ 0.41
PTPRF-215ENST00000496447 ARID4BQ4LE39 1312 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-215ENST00000496447 CLIP1P30622 1438 aa17.63■□□□□ 0.41
PTPRF-215ENST00000496447 PLEKHG5O94827 1062 aa17.63■□□□□ 0.41
PTPRF-215ENST00000496447 RRP7BPQ9NSQ0 103 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms