RNA–Protein interactions for RNA: ENST00000358028.8

NIPAL3-203, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 1,757 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-203ENST00000358028 NISCHQ9Y2I1 1504 aa32.18■■■□□ 2.74
NIPAL3-203ENST00000358028 CCDC180Q9P1Z9 1646 aa28.61■■■□□ 2.17
NIPAL3-203ENST00000358028 ABCC9O60706 1549 aa28.01■■■□□ 2.07
NIPAL3-203ENST00000358028 ZCCHC6Q5VYS8 1495 aaKnown RBP26.85■■□□□ 1.89
NIPAL3-203ENST00000358028 RB1CC1Q8TDY2 1594 aa26.81■■□□□ 1.88
NIPAL3-203ENST00000358028 NACADO15069 1562 aa26.8■■□□□ 1.88
NIPAL3-203ENST00000358028 DCAF8L2P0C7V8 631 aa26.76■■□□□ 1.87
NIPAL3-203ENST00000358028 MYO15BQ96JP2 1530 aa26.65■■□□□ 1.86
NIPAL3-203ENST00000358028 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
NIPAL3-203ENST00000358028 UNC13AQ9UPW8 1703 aa26.37■■□□□ 1.81
NIPAL3-203ENST00000358028 SCRIBQ14160 1630 aa26.13■■□□□ 1.77
NIPAL3-203ENST00000358028 PABPN1Q86U42 306 aaKnown RBP eCLIP26.07■■□□□ 1.76
NIPAL3-203ENST00000358028 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
NIPAL3-203ENST00000358028 DNAJC5BQ9UF47 199 aa26.05■■□□□ 1.76
NIPAL3-203ENST00000358028 SHROOM4Q9ULL8 1493 aa25.75■■□□□ 1.71
NIPAL3-203ENST00000358028 EIF4G1Q04637 1599 aaKnown RBP25.38■■□□□ 1.65
NIPAL3-203ENST00000358028 CC2D2AQ9P2K1 1620 aa25.36■■□□□ 1.65
NIPAL3-203ENST00000358028 CECR2Q9BXF3 1484 aa25.22■■□□□ 1.63
NIPAL3-203ENST00000358028 SMARCA4P51532 1647 aa24.99■■□□□ 1.59
NIPAL3-203ENST00000358028 BAZ1AQ9NRL2 1556 aaPredicted RBP24.93■■□□□ 1.58
NIPAL3-203ENST00000358028 SUPT5HO00267 1087 aaKnown RBP24.87■■□□□ 1.57
NIPAL3-203ENST00000358028 MROH2BQ7Z745 1585 aa24.83■■□□□ 1.57
NIPAL3-203ENST00000358028 ATAD2BQ9ULI0 1458 aa24.76■■□□□ 1.55
NIPAL3-203ENST00000358028 SMARCA2P51531 1590 aa24.74■■□□□ 1.55
NIPAL3-203ENST00000358028 PEG3Q9GZU2 1588 aa24.71■■□□□ 1.55
NIPAL3-203ENST00000358028 NCAPD3P42695 1498 aa24.69■■□□□ 1.54
NIPAL3-203ENST00000358028 HMGXB3Q12766 1538 aa24.63■■□□□ 1.53
NIPAL3-203ENST00000358028 WIZO95785 1651 aa24.62■■□□□ 1.53
NIPAL3-203ENST00000358028 BAZ1BQ9UIG0 1483 aaKnown RBP24.57■■□□□ 1.52
NIPAL3-203ENST00000358028 RSF1Q96T23 1441 aaPredicted RBP24.55■■□□□ 1.52
NIPAL3-203ENST00000358028 TOP2AP11388 1531 aaKnown RBP24.31■■□□□ 1.48
NIPAL3-203ENST00000358028 NESP48681 1621 aa24.16■■□□□ 1.46
NIPAL3-203ENST00000358028 ERCC6Q03468 1493 aa24.14■■□□□ 1.46
NIPAL3-203ENST00000358028 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
NIPAL3-203ENST00000358028 LAMC3Q9Y6N6 1575 aa24.07■■□□□ 1.44
NIPAL3-203ENST00000358028 CUX2O14529 1486 aa24.07■■□□□ 1.44
NIPAL3-203ENST00000358028 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
NIPAL3-203ENST00000358028 CADPSQ9ULU8 1353 aa23.97■■□□□ 1.43
NIPAL3-203ENST00000358028 KIF21AQ7Z4S6 1674 aa23.93■■□□□ 1.42
NIPAL3-203ENST00000358028 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
NIPAL3-203ENST00000358028 CFTRP13569 1480 aa23.89■■□□□ 1.41
NIPAL3-203ENST00000358028 PRDM2Q13029 1718 aa23.87■■□□□ 1.41
NIPAL3-203ENST00000358028 PDS5BQ9NTI5 1447 aa23.86■■□□□ 1.41
NIPAL3-203ENST00000358028 FANCD2Q9BXW9 1451 aa23.74■■□□□ 1.39
NIPAL3-203ENST00000358028 DNAJC5Q9H3Z4 198 aa23.73■■□□□ 1.39
NIPAL3-203ENST00000358028 CEP164Q9UPV0 1460 aa23.7■■□□□ 1.38
NIPAL3-203ENST00000358028 MRC2Q9UBG0 1479 aa23.67■■□□□ 1.38
NIPAL3-203ENST00000358028 WDR62O43379 1518 aa23.63■■□□□ 1.37
NIPAL3-203ENST00000358028 URB2Q14146 1524 aaKnown RBP23.52■■□□□ 1.36
NIPAL3-203ENST00000358028 TOPBP1Q92547 1522 aa23.39■■□□□ 1.34
NIPAL3-203ENST00000358028 DNMBPQ6XZF7 1577 aa23.39■■□□□ 1.33
NIPAL3-203ENST00000358028 ABCC8Q09428 1581 aa23.33■■□□□ 1.33
NIPAL3-203ENST00000358028 CUX1P39880 1505 aa23.29■■□□□ 1.32
NIPAL3-203ENST00000358028 TRIM41Q8WV44 630 aa23.29■■□□□ 1.32
NIPAL3-203ENST00000358028 LOC105371045A0A1W2PR82 267 aa23.27■■□□□ 1.32
NIPAL3-203ENST00000358028 POLA1P09884 1462 aaPredicted RBP23.2■■□□□ 1.31
NIPAL3-203ENST00000358028 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
NIPAL3-203ENST00000358028 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
NIPAL3-203ENST00000358028 TARBP1Q13395 1621 aaKnown RBP23.17■■□□□ 1.3
NIPAL3-203ENST00000358028 SYNJ1O43426 1573 aa23.16■■□□□ 1.3
NIPAL3-203ENST00000358028 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
NIPAL3-203ENST00000358028 WRNQ14191 1432 aaPredicted RBP eCLIP23.14■■□□□ 1.29
NIPAL3-203ENST00000358028 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
NIPAL3-203ENST00000358028 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
NIPAL3-203ENST00000358028 RAD54L2Q9Y4B4 1467 aa23.1■■□□□ 1.29
NIPAL3-203ENST00000358028 EIF4G3O43432 1585 aaKnown RBP23.07■■□□□ 1.28
NIPAL3-203ENST00000358028 WDR97A6NE52 1622 aa23.07■■□□□ 1.28
NIPAL3-203ENST00000358028 SOGA1O94964 1423 aa23.05■■□□□ 1.28
NIPAL3-203ENST00000358028 AQRO60306 1485 aaKnown RBP eCLIP22.97■■□□□ 1.273e-6■■■■□ 20.3
NIPAL3-203ENST00000358028 HRCP23327 699 aa22.95■■□□□ 1.26
NIPAL3-203ENST00000358028 FAM9AQ8IZU1 332 aaPredicted RBP22.95■■□□□ 1.26
NIPAL3-203ENST00000358028 OSCARQ8IYS5 282 aa22.94■■□□□ 1.26
NIPAL3-203ENST00000358028 ABCA10Q8WWZ4 1543 aa22.94■■□□□ 1.26
NIPAL3-203ENST00000358028 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
NIPAL3-203ENST00000358028 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
NIPAL3-203ENST00000358028 PBRM1Q86U86 1689 aa22.89■■□□□ 1.25
NIPAL3-203ENST00000358028 PCGF6Q9BYE7 350 aa22.89■■□□□ 1.25
NIPAL3-203ENST00000358028 GAPVD1Q14C86 1478 aa22.82■■□□□ 1.24
NIPAL3-203ENST00000358028 CHD1O14646 1710 aa22.8■■□□□ 1.24
NIPAL3-203ENST00000358028 GRIN2BQ13224 1484 aa22.79■■□□□ 1.24
NIPAL3-203ENST00000358028 SNAPC4Q5SXM2 1469 aa22.78■■□□□ 1.24
NIPAL3-203ENST00000358028 MAGI1Q96QZ7 1491 aaPredicted RBP22.73■■□□□ 1.23
NIPAL3-203ENST00000358028 RIMBP3CA6NJZ7 1639 aa22.69■■□□□ 1.22
NIPAL3-203ENST00000358028 RIMBP3BA6NNM3 1639 aa22.69■■□□□ 1.22
NIPAL3-203ENST00000358028 RIMBP3Q9UFD9 1639 aa22.69■■□□□ 1.22
NIPAL3-203ENST00000358028 TRIM26Q12899 539 aaPredicted RBP22.68■■□□□ 1.22
NIPAL3-203ENST00000358028 ERICH3Q5RHP9 1530 aa22.66■■□□□ 1.22
NIPAL3-203ENST00000358028 ADAMTS12P58397 1594 aa22.66■■□□□ 1.22
NIPAL3-203ENST00000358028 EHMT2Q96KQ7 1210 aa22.66■■□□□ 1.22
NIPAL3-203ENST00000358028 ARHGEF11O15085 1522 aa22.64■■□□□ 1.21
NIPAL3-203ENST00000358028 SYNJ2O15056 1496 aa22.63■■□□□ 1.21
NIPAL3-203ENST00000358028 KIF27Q86VH2 1401 aa22.62■■□□□ 1.21
NIPAL3-203ENST00000358028 FBLN2P98095 1184 aa22.61■■□□□ 1.21
NIPAL3-203ENST00000358028 EEA1Q15075 1411 aa22.57■■□□□ 1.2
NIPAL3-203ENST00000358028 CHMP7Q8WUX9 453 aaPredicted RBP22.55■■□□□ 1.2
NIPAL3-203ENST00000358028 FHAD1B1AJZ9 1412 aa22.54■■□□□ 1.2
NIPAL3-203ENST00000358028 CLASP1Q7Z460 1538 aa22.53■■□□□ 1.2
NIPAL3-203ENST00000358028 RUSC2Q8N2Y8 1516 aa22.53■■□□□ 1.2
NIPAL3-203ENST00000358028 CUL7Q14999 1698 aa22.53■■□□□ 1.2
NIPAL3-203ENST00000358028 GRIN2AQ12879 1464 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms