Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 CALM2-202ENST00000409563 770 ntTSL 5 BASIC11□□□□□ -0.651e-8■■□□□ 11.5
SFPQP23246 CALM2-204ENST00000456319 703 ntTSL 25.6□□□□□ -1.511e-8■■□□□ 11.5
SFPQP23246 RBM12-204ENST00000424458 1068 ntTSL 228.13■■■□□ 2.098e-7■■□□□ 11.5
SFPQP23246 CPNE1-223ENST00000475146 627 ntTSL 326.78■■□□□ 1.888e-7■■□□□ 11.5
SFPQP23246 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.538e-7■■□□□ 11.5
SFPQP23246 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.158e-7■■□□□ 11.5
SFPQP23246 RBM12-206ENST00000435161 565 ntTSL 413.33□□□□□ -0.288e-7■■□□□ 11.5
SFPQP23246 RBM12-205ENST00000431148 583 ntTSL 412.84□□□□□ -0.358e-7■■□□□ 11.5
SFPQP23246 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.78e-7■■□□□ 11.5
SFPQP23246 FAM169A-206ENST00000514200 751 ntTSL 420.32■□□□□ 0.845e-12■■□□□ 11.5
SFPQP23246 FAM169A-205ENST00000513277 803 ntTSL 319.17■□□□□ 0.665e-12■■□□□ 11.5
SFPQP23246 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.11□□□□□ -1.595e-12■■□□□ 11.5
SFPQP23246 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.645e-12■■□□□ 11.5
SFPQP23246 SMG1P3-201ENST00000435197 416 ntTSL 320.28■□□□□ 0.842e-6■■□□□ 11.5
SFPQP23246 IGF2BP3-207ENST00000468263 706 ntTSL 219.15■□□□□ 0.665e-10■■□□□ 11.5
SFPQP23246 GMDS-201ENST00000380805 1743 ntTSL 221.66■■□□□ 1.069e-7■■□□□ 11.5
SFPQP23246 FNDC3B-201ENST00000336824 7904 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.736e-7■■□□□ 11.4
SFPQP23246 FNDC3B-207ENST00000469491 2916 ntTSL 219.16■□□□□ 0.666e-7■■□□□ 11.4
SFPQP23246 FNDC3B-202ENST00000415807 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.276e-7■■□□□ 11.4
SFPQP23246 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC7.01□□□□□ -1.294e-7■■□□□ 11.4
SFPQP23246 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.394e-7■■□□□ 11.4
SFPQP23246 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.54e-7■■□□□ 11.4
SFPQP23246 NFE2L2-203ENST00000421929 979 ntTSL 1 (best)23.28■■□□□ 1.321e-6■■□□□ 11.4
SFPQP23246 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.6■□□□□ 0.251e-6■■□□□ 11.4
SFPQP23246 NFE2L2-207ENST00000448782 975 ntTSL 1 (best)13.2□□□□□ -0.31e-6■■□□□ 11.4
SFPQP23246 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.321e-6■■□□□ 11.4
SFPQP23246 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC6.26□□□□□ -1.411e-6■■□□□ 11.4
SFPQP23246 NFE2L2-208ENST00000449627 909 ntTSL 45.64□□□□□ -1.511e-6■■□□□ 11.4
SFPQP23246 NFE2L2-212ENST00000477534 930 ntTSL 1 (best)5.62□□□□□ -1.511e-6■■□□□ 11.4
SFPQP23246 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.057e-7■■□□□ 11.4
SFPQP23246 AC087482.1-202ENST00000558071 903 ntTSL 5 BASIC11.92□□□□□ -0.58e-7■■□□□ 11.4
SFPQP23246 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.771e-7■■□□□ 11.4
SFPQP23246 ANKRD11-207ENST00000562816 573 ntTSL 412.8□□□□□ -0.361e-6■■□□□ 11.4
SFPQP23246 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.331e-7■■□□□ 11.4
SFPQP23246 SMG1P3-202ENST00000437413 589 ntTSL 424.3■■□□□ 1.482e-6■■□□□ 11.4
SFPQP23246 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.73■□□□□ 0.592e-6■■□□□ 11.4
SFPQP23246 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.618e-7■■□□□ 11.4
SFPQP23246 SLC39A14-209ENST00000520644 377 ntTSL 522.29■■□□□ 1.168e-7■■□□□ 11.4
SFPQP23246 SLC39A14-212ENST00000524285 570 ntTSL 419.85■□□□□ 0.778e-7■■□□□ 11.4
SFPQP23246 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.178e-7■■□□□ 11.4
SFPQP23246 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.088e-7■■□□□ 11.4
SFPQP23246 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.238e-7■■□□□ 11.4
SFPQP23246 EPC2-202ENST00000397424 672 ntTSL 321.6■■□□□ 1.056e-7■■□□□ 11.4
SFPQP23246 EPC2-205ENST00000457184 724 ntTSL 521.15■□□□□ 0.986e-7■■□□□ 11.4
SFPQP23246 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.356e-7■■□□□ 11.4
SFPQP23246 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.82■■□□□ 1.562e-7■■□□□ 11.4
SFPQP23246 SPG7-217ENST00000568151 544 ntTSL 425.37■■□□□ 1.653e-7■□□□□ 11.3
SFPQP23246 SPG7-214ENST00000566371 581 ntTSL 324.11■■□□□ 1.453e-7■□□□□ 11.3
SFPQP23246 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.92■■□□□ 1.263e-7■□□□□ 11.3
SFPQP23246 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.763e-7■□□□□ 11.3
SFPQP23246 AC092123.2-201ENST00000611189 5421 ntBASIC14.45□□□□□ -0.13e-7■□□□□ 11.3
SFPQP23246 EEF1D-214ENST00000526135 535 ntTSL 214.35□□□□□ -0.111e-8■□□□□ 11.3
SFPQP23246 PACSIN2-207ENST00000422336 664 ntTSL 513.55□□□□□ -0.242e-6■□□□□ 11.3
SFPQP23246 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.154e-6■□□□□ 11.3
SFPQP23246 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.154e-6■□□□□ 11.3
SFPQP23246 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.014e-6■□□□□ 11.3
SFPQP23246 RNF220-207ENST00000470498 594 ntTSL 35.29□□□□□ -1.564e-6■□□□□ 11.3
SFPQP23246 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.361e-7■□□□□ 11.3
SFPQP23246 SSU72-203ENST00000378725 619 ntTSL 220.72■□□□□ 0.911e-7■□□□□ 11.3
SFPQP23246 BMPR1A-205ENST00000638429 5632 ntTSL 520.35■□□□□ 0.851e-7■□□□□ 11.3
SFPQP23246 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.8■□□□□ 0.769e-7■□□□□ 11.3
SFPQP23246 HNF4A-207ENST00000609262 540 ntTSL 1 (best)19.76■□□□□ 0.759e-7■□□□□ 11.3
SFPQP23246 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.93■□□□□ 0.39e-7■□□□□ 11.3
SFPQP23246 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.023e-6■□□□□ 11.3
SFPQP23246 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.28□□□□□ -0.129e-7■□□□□ 11.3
SFPQP23246 SRC-211ENST00000497734 446 ntTSL 1 (best)14.12□□□□□ -0.153e-6■□□□□ 11.3
SFPQP23246 SSU72-202ENST00000359060 4176 ntTSL 2 BASIC12.93□□□□□ -0.341e-7■□□□□ 11.3
SFPQP23246 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC12.88□□□□□ -0.359e-7■□□□□ 11.3
SFPQP23246 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.621e-7■□□□□ 11.3
SFPQP23246 C1GALT1-203ENST00000419721 591 ntTSL 323.19■■□□□ 1.31e-9■□□□□ 11.3
SFPQP23246 C1GALT1-206ENST00000467716 458 ntTSL 519.44■□□□□ 0.71e-9■□□□□ 11.3
SFPQP23246 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.051e-9■□□□□ 11.3
SFPQP23246 C1GALT1-207ENST00000476068 1186 ntTSL 1 (best)14.36□□□□□ -0.111e-9■□□□□ 11.3
SFPQP23246 C1GALT1-204ENST00000429911 802 ntTSL 513□□□□□ -0.331e-9■□□□□ 11.3
SFPQP23246 NPAS2-202ENST00000427413 625 ntTSL 38.23□□□□□ -1.093e-7■□□□□ 11.3
SFPQP23246 OAZ1-203ENST00000586054 2832 nt24.19■■□□□ 1.462e-6■□□□□ 11.3
SFPQP23246 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.68■□□□□ 0.426e-7■□□□□ 11.3
SFPQP23246 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.286e-7■□□□□ 11.3
SFPQP23246 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.286e-7■□□□□ 11.3
SFPQP23246 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.834e-7■□□□□ 11.3
SFPQP23246 SPRED2-201ENST00000356388 4097 ntTSL 1 (best) BASIC14.82□□□□□ -0.042e-6■□□□□ 11.3
SFPQP23246 SPRED2-205ENST00000440972 555 ntTSL 314.5□□□□□ -0.092e-6■□□□□ 11.3
SFPQP23246 CAPRIN1-205ENST00000528856 595 ntTSL 526.07■■□□□ 1.765e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-217ENST00000534825 668 ntTSL 319.92■□□□□ 0.785e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-216ENST00000534042 574 ntTSL 518.96■□□□□ 0.635e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.545e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-204ENST00000526494 399 ntTSL 417.32■□□□□ 0.365e-6■□□□□ 11.2
SFPQP23246 TNS3-202ENST00000413551 698 ntTSL 516.06■□□□□ 0.164e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.025e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-202ENST00000389645 3498 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.185e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-201ENST00000341394 4108 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.475e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.795e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-208ENST00000530008 580 ntTSL 46.88□□□□□ -1.315e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-211ENST00000532755 565 ntTSL 45.48□□□□□ -1.535e-6■□□□□ 11.2
SFPQP23246 CAPRIN1-214ENST00000533641 429 ntTSL 43.46□□□□□ -1.865e-6■□□□□ 11.2
SFPQP23246 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.65■□□□□ 0.262e-8■□□□□ 11.2
SFPQP23246 AC109326.1-201ENST00000624705 1321 ntBASIC14.15□□□□□ -0.151e-8■□□□□ 11.2
SFPQP23246 ATL2-211ENST00000456736 578 ntTSL 319.1■□□□□ 0.652e-6■□□□□ 11.2
SFPQP23246 ATL2-205ENST00000416222 593 ntTSL 418.32■□□□□ 0.522e-6■□□□□ 11.2
SFPQP23246 ATL2-212ENST00000472097 561 ntTSL 318.32■□□□□ 0.522e-6■□□□□ 11.2
Retrieved 100 of 4,991 protein–RNA pairs in 61.8 ms