RNA–Protein interactions for RNA: ENST00000435197.2

SMG1P3-201, Transcript of SMG1 pseudogene 3, humanhuman

TSL 3

Gene SMG1P3, Length 416 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1P3-201ENST00000435197 NISCHQ9Y2I1 1504 aa46.02■■■■■ 4.96
SMG1P3-201ENST00000435197 ABCC9O60706 1549 aa41.96■■■■■ 4.31
SMG1P3-201ENST00000435197 CCDC180Q9P1Z9 1646 aa41.59■■■■■ 4.25
SMG1P3-201ENST00000435197 RB1CC1Q8TDY2 1594 aa39.77■■■■□ 3.96
SMG1P3-201ENST00000435197 DNAJC5BQ9UF47 199 aa39.74■■■■□ 3.95
SMG1P3-201ENST00000435197 NACADO15069 1562 aa39.38■■■■□ 3.89
SMG1P3-201ENST00000435197 UNC13AQ9UPW8 1703 aa38.97■■■■□ 3.83
SMG1P3-201ENST00000435197 PABPN1Q86U42 306 aaKnown RBP eCLIP38.92■■■■□ 3.825e-6■■■■□ 22.2
SMG1P3-201ENST00000435197 DCAF8L2P0C7V8 631 aa38.91■■■■□ 3.82
SMG1P3-201ENST00000435197 MYO15BQ96JP2 1530 aa38.67■■■■□ 3.78
SMG1P3-201ENST00000435197 BICRAQ9NZM4 1560 aa38.65■■■■□ 3.78
SMG1P3-201ENST00000435197 SHROOM4Q9ULL8 1493 aa38.08■■■■□ 3.69
SMG1P3-201ENST00000435197 ZCCHC6Q5VYS8 1495 aaKnown RBP38.05■■■■□ 3.68
SMG1P3-201ENST00000435197 DCAF1Q9Y4B6 1507 aa38■■■■□ 3.67
SMG1P3-201ENST00000435197 CC2D2AQ9P2K1 1620 aa37.93■■■■□ 3.66
SMG1P3-201ENST00000435197 CECR2Q9BXF3 1484 aa37.85■■■■□ 3.65
SMG1P3-201ENST00000435197 SCRIBQ14160 1630 aa37.82■■■■□ 3.64
SMG1P3-201ENST00000435197 EIF4G1Q04637 1599 aaKnown RBP37.72■■■■□ 3.63
SMG1P3-201ENST00000435197 DNAJC5Q9H3Z4 198 aa36.85■■■■□ 3.49
SMG1P3-201ENST00000435197 CUX2O14529 1486 aa36.39■■■■□ 3.42
SMG1P3-201ENST00000435197 NCAPD3P42695 1498 aa36.32■■■■□ 3.41
SMG1P3-201ENST00000435197 ERCC6Q03468 1493 aa36.26■■■■□ 3.4
SMG1P3-201ENST00000435197 ATAD2BQ9ULI0 1458 aa36.15■■■■□ 3.38
SMG1P3-201ENST00000435197 HMGXB3Q12766 1538 aa36.06■■■■□ 3.36
SMG1P3-201ENST00000435197 SMARCA2P51531 1590 aa36.05■■■■□ 3.36
SMG1P3-201ENST00000435197 SMARCA4P51532 1647 aa36.04■■■■□ 3.36
SMG1P3-201ENST00000435197 NESP48681 1621 aa35.92■■■■□ 3.34
SMG1P3-201ENST00000435197 BAZ1BQ9UIG0 1483 aaKnown RBP35.78■■■■□ 3.32
SMG1P3-201ENST00000435197 BAZ1AQ9NRL2 1556 aaPredicted RBP35.76■■■■□ 3.32
SMG1P3-201ENST00000435197 THOC2Q8NI27 1593 aaKnown RBP35.72■■■■□ 3.31
SMG1P3-201ENST00000435197 PEG3Q9GZU2 1588 aa35.69■■■■□ 3.3
SMG1P3-201ENST00000435197 LAMC3Q9Y6N6 1575 aa35.63■■■■□ 3.29
SMG1P3-201ENST00000435197 KIF21AQ7Z4S6 1674 aa35.52■■■■□ 3.28
SMG1P3-201ENST00000435197 MROH2BQ7Z745 1585 aa35.46■■■■□ 3.27
SMG1P3-201ENST00000435197 PDS5BQ9NTI5 1447 aa35.37■■■■□ 3.25
SMG1P3-201ENST00000435197 CADPSQ9ULU8 1353 aa35.16■■■■□ 3.22
SMG1P3-201ENST00000435197 MRC2Q9UBG0 1479 aa35.14■■■■□ 3.22
SMG1P3-201ENST00000435197 WDR62O43379 1518 aa35.1■■■■□ 3.21
SMG1P3-201ENST00000435197 WIZO95785 1651 aa35.04■■■■□ 3.2
SMG1P3-201ENST00000435197 TRIM41Q8WV44 630 aa35.02■■■■□ 3.2
SMG1P3-201ENST00000435197 CEP164Q9UPV0 1460 aa34.9■■■■□ 3.18
SMG1P3-201ENST00000435197 FANCD2Q9BXW9 1451 aa34.8■■■■□ 3.16
SMG1P3-201ENST00000435197 CFTRP13569 1480 aa34.7■■■■□ 3.15
SMG1P3-201ENST00000435197 URB2Q14146 1524 aaKnown RBP34.57■■■■□ 3.12
SMG1P3-201ENST00000435197 OSCARQ8IYS5 282 aa34.56■■■■□ 3.12
SMG1P3-201ENST00000435197 TOP2AP11388 1531 aaKnown RBP34.55■■■■□ 3.12
SMG1P3-201ENST00000435197 RSF1Q96T23 1441 aaPredicted RBP34.51■■■■□ 3.12
SMG1P3-201ENST00000435197 PRDM2Q13029 1718 aa34.45■■■■□ 3.11
SMG1P3-201ENST00000435197 RIMBP3CA6NJZ7 1639 aa34.29■■■■□ 3.08
SMG1P3-201ENST00000435197 RIMBP3BA6NNM3 1639 aa34.29■■■■□ 3.08
SMG1P3-201ENST00000435197 RIMBP3Q9UFD9 1639 aa34.29■■■■□ 3.08
SMG1P3-201ENST00000435197 IFT140Q96RY7 1462 aa34.21■■■■□ 3.07
SMG1P3-201ENST00000435197 ZNF608Q9ULD9 1512 aaPredicted RBP34.2■■■■□ 3.07
SMG1P3-201ENST00000435197 CCDC88BA6NC98 1476 aa34.12■■■■□ 3.05
SMG1P3-201ENST00000435197 TOPBP1Q92547 1522 aa34.11■■■■□ 3.05
SMG1P3-201ENST00000435197 ARHGEF11O15085 1522 aa34.1■■■■□ 3.05
SMG1P3-201ENST00000435197 EIF4G3O43432 1585 aaKnown RBP34.06■■■■□ 3.04
SMG1P3-201ENST00000435197 ABCC8Q09428 1581 aa33.98■■■■□ 3.03
SMG1P3-201ENST00000435197 DNMBPQ6XZF7 1577 aa33.96■■■■□ 3.03
SMG1P3-201ENST00000435197 CHD1O14646 1710 aa33.93■■■■□ 3.02
SMG1P3-201ENST00000435197 TARBP1Q13395 1621 aaKnown RBP33.88■■■■□ 3.01
SMG1P3-201ENST00000435197 AQRO60306 1485 aaKnown RBP eCLIP33.81■■■■□ 3
SMG1P3-201ENST00000435197 CYB5RLQ6IPT4 315 aa33.78■■■■□ 3
SMG1P3-201ENST00000435197 ARAP1Q96P48 1450 aa33.73■■■□□ 2.99
SMG1P3-201ENST00000435197 POLA1P09884 1462 aaPredicted RBP33.72■■■□□ 2.99
SMG1P3-201ENST00000435197 FBLN2P98095 1184 aa33.62■■■□□ 2.97
SMG1P3-201ENST00000435197 RAD54L2Q9Y4B4 1467 aa33.58■■■□□ 2.97
SMG1P3-201ENST00000435197 TRHP20396 242 aaPredicted RBP33.56■■■□□ 2.96
SMG1P3-201ENST00000435197 WDR97A6NE52 1622 aa33.51■■■□□ 2.96
SMG1P3-201ENST00000435197 SOGA1O94964 1423 aa33.51■■■□□ 2.95
SMG1P3-201ENST00000435197 TDRD9Q8NDG6 1382 aaKnown RBP33.5■■■□□ 2.95
SMG1P3-201ENST00000435197 CLASP1Q7Z460 1538 aa33.48■■■□□ 2.95
SMG1P3-201ENST00000435197 SNAPC4Q5SXM2 1469 aa33.48■■■□□ 2.95
SMG1P3-201ENST00000435197 FGD5Q6ZNL6 1462 aa33.44■■■□□ 2.94
SMG1P3-201ENST00000435197 SYNJ1O43426 1573 aa33.4■■■□□ 2.94
SMG1P3-201ENST00000435197 MAGI1Q96QZ7 1491 aaPredicted RBP33.37■■■□□ 2.93
SMG1P3-201ENST00000435197 CUX1P39880 1505 aa33.35■■■□□ 2.93
SMG1P3-201ENST00000435197 GRIN2BQ13224 1484 aa33.31■■■□□ 2.92
SMG1P3-201ENST00000435197 CHMP7Q8WUX9 453 aaPredicted RBP33.31■■■□□ 2.92
SMG1P3-201ENST00000435197 SYNJ2O15056 1496 aa33.27■■■□□ 2.92
SMG1P3-201ENST00000435197 PBRM1Q86U86 1689 aa33.25■■■□□ 2.91
SMG1P3-201ENST00000435197 GAPVD1Q14C86 1478 aa33.12■■■□□ 2.89
SMG1P3-201ENST00000435197 ABCA5Q8WWZ7 1642 aa33.09■■■□□ 2.89
SMG1P3-201ENST00000435197 ABCA10Q8WWZ4 1543 aa33.03■■■□□ 2.88
SMG1P3-201ENST00000435197 AEBP2Q6ZN18 517 aaPredicted RBP32.93■■■□□ 2.86
SMG1P3-201ENST00000435197 ERCC6L2Q5T890 1561 aa32.91■■■□□ 2.86
SMG1P3-201ENST00000435197 GRIN2AQ12879 1464 aa32.9■■■□□ 2.86
SMG1P3-201ENST00000435197 ADAMTS12P58397 1594 aa32.87■■■□□ 2.85
SMG1P3-201ENST00000435197 CEP170Q5SW79 1584 aa32.83■■■□□ 2.85
SMG1P3-201ENST00000435197 NUP160Q12769 1436 aa32.8■■■□□ 2.84
SMG1P3-201ENST00000435197 SHROOM2Q13796 1616 aa32.77■■■□□ 2.84
SMG1P3-201ENST00000435197 WRNQ14191 1432 aaPredicted RBP eCLIP32.77■■■□□ 2.842e-6■■■■□ 22.3
SMG1P3-201ENST00000435197 BIVM-ERCC5R4GMW8 1640 aa32.73■■■□□ 2.83
SMG1P3-201ENST00000435197 TOP2BQ02880 1626 aa32.69■■■□□ 2.82
SMG1P3-201ENST00000435197 FHAD1B1AJZ9 1412 aa32.68■■■□□ 2.82
SMG1P3-201ENST00000435197 KIF13AQ9H1H9 1805 aa32.63■■■□□ 2.81
SMG1P3-201ENST00000435197 ERICH3Q5RHP9 1530 aa32.62■■■□□ 2.81
SMG1P3-201ENST00000435197 SUPT5HO00267 1087 aaKnown RBP32.54■■■□□ 2.8
SMG1P3-201ENST00000435197 PRG4Q92954 1404 aaPredicted RBP32.5■■■□□ 2.79
SMG1P3-201ENST00000435197 RUSC2Q8N2Y8 1516 aa32.42■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms