RNA–Protein interactions for RNA: ENST00000355387.6

RNF220-202, Transcript of ring finger protein 220, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF220, Length 3,099 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-202ENST00000355387 NISCHQ9Y2I1 1504 aa27.02■■□□□ 1.92
RNF220-202ENST00000355387 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
RNF220-202ENST00000355387 ZCCHC6Q5VYS8 1495 aaKnown RBP22.93■■□□□ 1.26
RNF220-202ENST00000355387 SHROOM4Q9ULL8 1493 aa22.52■■□□□ 1.2
RNF220-202ENST00000355387 DCAF1Q9Y4B6 1507 aa22.44■■□□□ 1.18
RNF220-202ENST00000355387 SUPT5HO00267 1087 aaKnown RBP22.13■■□□□ 1.13
RNF220-202ENST00000355387 MYO15BQ96JP2 1530 aa21.82■■□□□ 1.08
RNF220-202ENST00000355387 CHIC1Q5VXU3 224 aa21.8■■□□□ 1.08
RNF220-202ENST00000355387 DCAF8L2P0C7V8 631 aa21.72■■□□□ 1.07
RNF220-202ENST00000355387 ABCC9O60706 1549 aa21.68■■□□□ 1.06
RNF220-202ENST00000355387 SCRIBQ14160 1630 aa21.35■■□□□ 1.01
RNF220-202ENST00000355387 NACADO15069 1562 aa21.33■■□□□ 1.01
RNF220-202ENST00000355387 RSF1Q96T23 1441 aaPredicted RBP21.29■■□□□ 1
RNF220-202ENST00000355387 HRCP23327 699 aa21.29■■□□□ 1
RNF220-202ENST00000355387 RB1CC1Q8TDY2 1594 aa21.24■□□□□ 0.99
RNF220-202ENST00000355387 PCGF6Q9BYE7 350 aa21■□□□□ 0.95
RNF220-202ENST00000355387 LOC105371045A0A1W2PR82 267 aa20.92■□□□□ 0.94
RNF220-202ENST00000355387 MROH2BQ7Z745 1585 aa20.88■□□□□ 0.93
RNF220-202ENST00000355387 BAZ1AQ9NRL2 1556 aaPredicted RBP20.87■□□□□ 0.93
RNF220-202ENST00000355387 CECR2Q9BXF3 1484 aa20.85■□□□□ 0.93
RNF220-202ENST00000355387 TRIM26Q12899 539 aaPredicted RBP20.84■□□□□ 0.93
RNF220-202ENST00000355387 TRIM41Q8WV44 630 aa20.79■□□□□ 0.92
RNF220-202ENST00000355387 WIZO95785 1651 aa20.79■□□□□ 0.92
RNF220-202ENST00000355387 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
RNF220-202ENST00000355387 TOP2AP11388 1531 aaKnown RBP20.63■□□□□ 0.89
RNF220-202ENST00000355387 UNC13AQ9UPW8 1703 aa20.61■□□□□ 0.89
RNF220-202ENST00000355387 SMARCA4P51532 1647 aa20.6■□□□□ 0.89
RNF220-202ENST00000355387 ZEB1P37275 1124 aaPredicted RBP20.57■□□□□ 0.88
RNF220-202ENST00000355387 PPARGC1BQ86YN6 1023 aaKnown RBP20.5■□□□□ 0.87
RNF220-202ENST00000355387 SMARCA2P51531 1590 aa20.47■□□□□ 0.87
RNF220-202ENST00000355387 CCDC88BA6NC98 1476 aa20.38■□□□□ 0.85
RNF220-202ENST00000355387 PEG3Q9GZU2 1588 aa20.36■□□□□ 0.85
RNF220-202ENST00000355387 FAM9AQ8IZU1 332 aaPredicted RBP20.35■□□□□ 0.85
RNF220-202ENST00000355387 EEA1Q15075 1411 aa20.3■□□□□ 0.84
RNF220-202ENST00000355387 WRNQ14191 1432 aaPredicted RBP eCLIP20.28■□□□□ 0.84
RNF220-202ENST00000355387 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.84
RNF220-202ENST00000355387 ABCC8Q09428 1581 aa20.25■□□□□ 0.83
RNF220-202ENST00000355387 TNIKQ9UKE5 1360 aa20.14■□□□□ 0.82
RNF220-202ENST00000355387 CEP162Q5TB80 1403 aa20.08■□□□□ 0.81
RNF220-202ENST00000355387 PELP1Q8IZL8 1130 aaKnown RBP20.04■□□□□ 0.8
RNF220-202ENST00000355387 SOGA1O94964 1423 aa20.03■□□□□ 0.8
RNF220-202ENST00000355387 KIF21BO75037 1637 aa20.03■□□□□ 0.8
RNF220-202ENST00000355387 GOLGA3Q08378 1498 aa20.02■□□□□ 0.8
RNF220-202ENST00000355387 CSRNP3Q8WYN3 585 aa19.97■□□□□ 0.79
RNF220-202ENST00000355387 ATAD2BQ9ULI0 1458 aa19.96■□□□□ 0.79
RNF220-202ENST00000355387 EHMT2Q96KQ7 1210 aa19.95■□□□□ 0.78
RNF220-202ENST00000355387 SYNJ1O43426 1573 aa19.93■□□□□ 0.78
RNF220-202ENST00000355387 CEP164Q9UPV0 1460 aa19.93■□□□□ 0.78
RNF220-202ENST00000355387 RUSC2Q8N2Y8 1516 aa19.9■□□□□ 0.78
RNF220-202ENST00000355387 BAZ1BQ9UIG0 1483 aaKnown RBP19.89■□□□□ 0.77
RNF220-202ENST00000355387 BIVM-ERCC5R4GMW8 1640 aa19.82■□□□□ 0.76
RNF220-202ENST00000355387 TOP2BQ02880 1626 aa19.82■□□□□ 0.76
RNF220-202ENST00000355387 PABPN1Q86U42 306 aaKnown RBP eCLIP19.79■□□□□ 0.76
RNF220-202ENST00000355387 CCER1Q8TC90 406 aaPredicted RBP19.79■□□□□ 0.76
RNF220-202ENST00000355387 HMGXB3Q12766 1538 aa19.76■□□□□ 0.75
RNF220-202ENST00000355387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.74■□□□□ 0.75
RNF220-202ENST00000355387 UBTFP17480 764 aaKnown RBP19.72■□□□□ 0.75
RNF220-202ENST00000355387 ERICH3Q5RHP9 1530 aa19.71■□□□□ 0.75
RNF220-202ENST00000355387 VPS8Q8N3P4 1428 aa19.7■□□□□ 0.74
RNF220-202ENST00000355387 CLIP1P30622 1438 aa19.69■□□□□ 0.74
RNF220-202ENST00000355387 NCAPD3P42695 1498 aa19.65■□□□□ 0.74
RNF220-202ENST00000355387 RAPGEF2Q9Y4G8 1499 aa19.61■□□□□ 0.73
RNF220-202ENST00000355387 PRDM2Q13029 1718 aa19.6■□□□□ 0.73
RNF220-202ENST00000355387 PRXQ9BXM0 1461 aa19.57■□□□□ 0.72
RNF220-202ENST00000355387 SCAF1Q9H7N4 1312 aaKnown RBP19.52■□□□□ 0.72
RNF220-202ENST00000355387 DIEXFQ68CQ4 756 aaKnown RBP19.49■□□□□ 0.71
RNF220-202ENST00000355387 CFTRP13569 1480 aa19.48■□□□□ 0.71
RNF220-202ENST00000355387 CUX1P39880 1505 aa19.48■□□□□ 0.71
RNF220-202ENST00000355387 ACIN1Q9UKV3 1341 aaKnown RBP19.43■□□□□ 0.7
RNF220-202ENST00000355387 ARAP1Q96P48 1450 aa19.42■□□□□ 0.7
RNF220-202ENST00000355387 KIF27Q86VH2 1401 aa19.41■□□□□ 0.7
RNF220-202ENST00000355387 ZNF316A6NFI3 1004 aaPredicted RBP19.41■□□□□ 0.7
RNF220-202ENST00000355387 APLP2Q06481 763 aa19.4■□□□□ 0.7
RNF220-202ENST00000355387 TTBK1Q5TCY1 1321 aaPredicted RBP19.4■□□□□ 0.7
RNF220-202ENST00000355387 CLSPNQ9HAW4 1339 aa19.39■□□□□ 0.7
RNF220-202ENST00000355387 CENPBP07199 599 aaPredicted RBP19.38■□□□□ 0.69
RNF220-202ENST00000355387 MYT1Q01538 1121 aa19.32■□□□□ 0.68
RNF220-202ENST00000355387 RRBP1Q9P2E9 1410 aaKnown RBP19.31■□□□□ 0.68
RNF220-202ENST00000355387 CUX2O14529 1486 aa19.3■□□□□ 0.68
RNF220-202ENST00000355387 MAP3K1Q13233 1512 aa19.29■□□□□ 0.68
RNF220-202ENST00000355387 NEUROD1Q13562 356 aa19.27■□□□□ 0.68
RNF220-202ENST00000355387 HNRNPUL2Q1KMD3 747 aaKnown RBP19.25■□□□□ 0.67
RNF220-202ENST00000355387 ARHGAP35Q9NRY4 1499 aa19.23■□□□□ 0.67
RNF220-202ENST00000355387 DHX57Q6P158 1386 aaKnown RBP19.18■□□□□ 0.66
RNF220-202ENST00000355387 CADPSQ9ULU8 1353 aa19.16■□□□□ 0.66
RNF220-202ENST00000355387 TIAM1Q13009 1591 aa19.14■□□□□ 0.65
RNF220-202ENST00000355387 IGF1RP08069 1367 aa19.12■□□□□ 0.65
RNF220-202ENST00000355387 CFAP43Q8NDM7 1665 aa19.11■□□□□ 0.65
RNF220-202ENST00000355387 CCNB3Q8WWL7 1395 aa19.09■□□□□ 0.65
RNF220-202ENST00000355387 FGD5Q6ZNL6 1462 aa19.09■□□□□ 0.65
RNF220-202ENST00000355387 KANK4Q5T7N3 995 aaPredicted RBP19.08■□□□□ 0.65
RNF220-202ENST00000355387 GTF3C3Q9Y5Q9 886 aa19.08■□□□□ 0.64
RNF220-202ENST00000355387 CC2D2AQ9P2K1 1620 aa19.05■□□□□ 0.64
RNF220-202ENST00000355387 DNMBPQ6XZF7 1577 aa19.04■□□□□ 0.64
RNF220-202ENST00000355387 CARMIL1Q5VZK9 1371 aa19.03■□□□□ 0.64
RNF220-202ENST00000355387 FHAD1B1AJZ9 1412 aa19.03■□□□□ 0.64
RNF220-202ENST00000355387 CUL7Q14999 1698 aa19.02■□□□□ 0.64
RNF220-202ENST00000355387 EFCAB5A4FU69 1503 aa19.02■□□□□ 0.63
RNF220-202ENST00000355387 RANGAP1P46060 587 aaPredicted RBP19.01■□□□□ 0.63
RNF220-202ENST00000355387 MIER1Q8N108 512 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms