RNA–Protein interactions for RNA: ENST00000268704.6

SPG7-201, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPG7, Length 3,076 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-201ENST00000268704 NISCHQ9Y2I1 1504 aa34.34■■■■□ 3.09
SPG7-201ENST00000268704 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
SPG7-201ENST00000268704 SUPT5HO00267 1087 aaKnown RBP29.45■■■□□ 2.3
SPG7-201ENST00000268704 ZCCHC6Q5VYS8 1495 aaKnown RBP29.11■■■□□ 2.25
SPG7-201ENST00000268704 CCDC180Q9P1Z9 1646 aa28.9■■■□□ 2.22
SPG7-201ENST00000268704 MYO15BQ96JP2 1530 aa28.78■■■□□ 2.2
SPG7-201ENST00000268704 DCAF8L2P0C7V8 631 aa28.71■■■□□ 2.19
SPG7-201ENST00000268704 CHIC1Q5VXU3 224 aa28.66■■■□□ 2.18
SPG7-201ENST00000268704 HRCP23327 699 aa28.39■■■□□ 2.14
SPG7-201ENST00000268704 PCGF6Q9BYE7 350 aa28.27■■■□□ 2.12
SPG7-201ENST00000268704 LOC105371045A0A1W2PR82 267 aa27.99■■■□□ 2.07
SPG7-201ENST00000268704 PPARGC1BQ86YN6 1023 aaKnown RBP27.99■■■□□ 2.07
SPG7-201ENST00000268704 DCAF1Q9Y4B6 1507 aa27.98■■■□□ 2.07
SPG7-201ENST00000268704 ABCC9O60706 1549 aa27.75■■■□□ 2.03
SPG7-201ENST00000268704 TRIM26Q12899 539 aaPredicted RBP27.47■■□□□ 1.99
SPG7-201ENST00000268704 SCRIBQ14160 1630 aa27.44■■□□□ 1.98
SPG7-201ENST00000268704 RSF1Q96T23 1441 aaPredicted RBP27.38■■□□□ 1.97
SPG7-201ENST00000268704 FAM9AQ8IZU1 332 aaPredicted RBP27.26■■□□□ 1.95
SPG7-201ENST00000268704 TRIM41Q8WV44 630 aa27.26■■□□□ 1.95
SPG7-201ENST00000268704 RB1CC1Q8TDY2 1594 aa27.26■■□□□ 1.95
SPG7-201ENST00000268704 EHMT2Q96KQ7 1210 aa27.19■■□□□ 1.94
SPG7-201ENST00000268704 CECR2Q9BXF3 1484 aa26.93■■□□□ 1.9
SPG7-201ENST00000268704 ZEB1P37275 1124 aaPredicted RBP26.88■■□□□ 1.89
SPG7-201ENST00000268704 MROH2BQ7Z745 1585 aa26.83■■□□□ 1.89
SPG7-201ENST00000268704 NACADO15069 1562 aa26.79■■□□□ 1.88
SPG7-201ENST00000268704 WIZO95785 1651 aa26.74■■□□□ 1.87
SPG7-201ENST00000268704 SCAF1Q9H7N4 1312 aaKnown RBP26.5■■□□□ 1.83
SPG7-201ENST00000268704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.5■■□□□ 1.83
SPG7-201ENST00000268704 BAZ1AQ9NRL2 1556 aaPredicted RBP26.46■■□□□ 1.83
SPG7-201ENST00000268704 EIF4G1Q04637 1599 aaKnown RBP26.43■■□□□ 1.82
SPG7-201ENST00000268704 TTBK1Q5TCY1 1321 aaPredicted RBP26.39■■□□□ 1.81
SPG7-201ENST00000268704 CCER1Q8TC90 406 aaPredicted RBP26.36■■□□□ 1.81
SPG7-201ENST00000268704 PELP1Q8IZL8 1130 aaKnown RBP26.35■■□□□ 1.81
SPG7-201ENST00000268704 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
SPG7-201ENST00000268704 CCDC88BA6NC98 1476 aa26.26■■□□□ 1.8
SPG7-201ENST00000268704 TOP2AP11388 1531 aaKnown RBP26.17■■□□□ 1.78
SPG7-201ENST00000268704 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.78
SPG7-201ENST00000268704 SOGA1O94964 1423 aa26.13■■□□□ 1.77
SPG7-201ENST00000268704 CEP162Q5TB80 1403 aa26.12■■□□□ 1.77
SPG7-201ENST00000268704 SMARCA4P51532 1647 aa26.1■■□□□ 1.77
SPG7-201ENST00000268704 SMARCA2P51531 1590 aa26.1■■□□□ 1.77
SPG7-201ENST00000268704 PABPN1Q86U42 306 aaKnown RBP eCLIP26.1■■□□□ 1.773e-7■■■□□ 17.3
SPG7-201ENST00000268704 NEUROD1Q13562 356 aa26.06■■□□□ 1.76
SPG7-201ENST00000268704 WRNQ14191 1432 aaPredicted RBP eCLIP26.05■■□□□ 1.76
SPG7-201ENST00000268704 RUSC2Q8N2Y8 1516 aa26.03■■□□□ 1.76
SPG7-201ENST00000268704 DIEXFQ68CQ4 756 aaKnown RBP26.02■■□□□ 1.76
SPG7-201ENST00000268704 ACIN1Q9UKV3 1341 aaKnown RBP26.02■■□□□ 1.76
SPG7-201ENST00000268704 UBTFP17480 764 aaKnown RBP25.96■■□□□ 1.75
SPG7-201ENST00000268704 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
SPG7-201ENST00000268704 TNIKQ9UKE5 1360 aa25.94■■□□□ 1.74
SPG7-201ENST00000268704 CSRNP3Q8WYN3 585 aa25.91■■□□□ 1.74
SPG7-201ENST00000268704 GTF3C3Q9Y5Q9 886 aa25.82■■□□□ 1.72
SPG7-201ENST00000268704 EEA1Q15075 1411 aa25.78■■□□□ 1.72
SPG7-201ENST00000268704 GOLGA3Q08378 1498 aa25.76■■□□□ 1.71
SPG7-201ENST00000268704 CENPBP07199 599 aaPredicted RBP25.74■■□□□ 1.71
SPG7-201ENST00000268704 HNRNPUL2Q1KMD3 747 aaKnown RBP25.68■■□□□ 1.7
SPG7-201ENST00000268704 ZNF316A6NFI3 1004 aaPredicted RBP25.67■■□□□ 1.7
SPG7-201ENST00000268704 SYNJ1O43426 1573 aa25.63■■□□□ 1.69
SPG7-201ENST00000268704 YTHDC1Q96MU7 727 aaKnown RBP25.61■■□□□ 1.69
SPG7-201ENST00000268704 RANGAP1P46060 587 aaPredicted RBP25.57■■□□□ 1.68
SPG7-201ENST00000268704 CEP164Q9UPV0 1460 aa25.55■■□□□ 1.68
SPG7-201ENST00000268704 CLIP1P30622 1438 aa25.54■■□□□ 1.68
SPG7-201ENST00000268704 KIF21BO75037 1637 aa25.5■■□□□ 1.67
SPG7-201ENST00000268704 MIER1Q8N108 512 aa25.47■■□□□ 1.67
SPG7-201ENST00000268704 PEG3Q9GZU2 1588 aa25.45■■□□□ 1.67
SPG7-201ENST00000268704 RAPGEF2Q9Y4G8 1499 aa25.45■■□□□ 1.66
SPG7-201ENST00000268704 VPS8Q8N3P4 1428 aa25.43■■□□□ 1.66
SPG7-201ENST00000268704 APLP2Q06481 763 aa25.37■■□□□ 1.65
SPG7-201ENST00000268704 ATAD2BQ9ULI0 1458 aa25.34■■□□□ 1.65
SPG7-201ENST00000268704 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
SPG7-201ENST00000268704 TOP2BQ02880 1626 aa25.17■■□□□ 1.62
SPG7-201ENST00000268704 MYT1Q01538 1121 aa25.15■■□□□ 1.62
SPG7-201ENST00000268704 DNAJC5BQ9UF47 199 aa25.15■■□□□ 1.62
SPG7-201ENST00000268704 KANK4Q5T7N3 995 aaPredicted RBP25.12■■□□□ 1.61
SPG7-201ENST00000268704 ARAP1Q96P48 1450 aa25.1■■□□□ 1.61
SPG7-201ENST00000268704 DHX57Q6P158 1386 aaKnown RBP25.09■■□□□ 1.61
SPG7-201ENST00000268704 BIVM-ERCC5R4GMW8 1640 aa25.05■■□□□ 1.6
SPG7-201ENST00000268704 CC2D2AQ9P2K1 1620 aa25.04■■□□□ 1.6
SPG7-201ENST00000268704 PRXQ9BXM0 1461 aa25.03■■□□□ 1.6
SPG7-201ENST00000268704 ERICH3Q5RHP9 1530 aa24.99■■□□□ 1.59
SPG7-201ENST00000268704 CUX1P39880 1505 aa24.93■■□□□ 1.58
SPG7-201ENST00000268704 ITGAEP38570 1179 aa24.92■■□□□ 1.58
SPG7-201ENST00000268704 CLSPNQ9HAW4 1339 aa24.92■■□□□ 1.58
SPG7-201ENST00000268704 RRBP1Q9P2E9 1410 aaKnown RBP24.86■■□□□ 1.57
SPG7-201ENST00000268704 KIF27Q86VH2 1401 aa24.83■■□□□ 1.57
SPG7-201ENST00000268704 ARHGAP35Q9NRY4 1499 aa24.81■■□□□ 1.56
SPG7-201ENST00000268704 CCNB3Q8WWL7 1395 aa24.8■■□□□ 1.56
SPG7-201ENST00000268704 NCAPD3P42695 1498 aa24.77■■□□□ 1.56
SPG7-201ENST00000268704 SUPT16HQ9Y5B9 1047 aaKnown RBP24.75■■□□□ 1.55
SPG7-201ENST00000268704 CUX2O14529 1486 aa24.72■■□□□ 1.55
SPG7-201ENST00000268704 HMGXB3Q12766 1538 aa24.7■■□□□ 1.55
SPG7-201ENST00000268704 KCNH8Q96L42 1107 aa24.69■■□□□ 1.54
SPG7-201ENST00000268704 RAB3GAP2Q9H2M9 1393 aa24.68■■□□□ 1.54
SPG7-201ENST00000268704 CFTRP13569 1480 aa24.66■■□□□ 1.54
SPG7-201ENST00000268704 MAPKBP1O60336 1514 aa24.63■■□□□ 1.53
SPG7-201ENST00000268704 TIAM1Q13009 1591 aa24.57■■□□□ 1.52
SPG7-201ENST00000268704 IGF1RP08069 1367 aa24.57■■□□□ 1.52
SPG7-201ENST00000268704 SIN3AQ96ST3 1273 aa24.53■■□□□ 1.52
SPG7-201ENST00000268704 PHLDB1Q86UU1 1377 aa24.53■■□□□ 1.52
SPG7-201ENST00000268704 FAM50AQ14320 339 aaKnown RBP24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms