Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA1P55317 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
FOXA1P55317 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 KRT8P18-201ENST00000413425 1445 ntBASIC13.4□□□□□ -0.26
FOXA1P55317 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 C2-209ENST00000452323 1999 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
FOXA1P55317 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
FOXA1P55317 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA1P55317 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 AC104306.2-201ENST00000451877 341 ntBASIC13.4□□□□□ -0.26
FOXA1P55317 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA1P55317 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
FOXA1P55317 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA1P55317 MIR3940-201ENST00000579148 102 ntBASIC13.4□□□□□ -0.26
FOXA1P55317 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA1P55317 AL451050.2-201ENST00000606967 682 ntBASIC13.4□□□□□ -0.26
FOXA1P55317 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 AL008638.5-201ENST00000623814 1298 ntBASIC13.4□□□□□ -0.26
FOXA1P55317 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA1P55317 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 TBC1D27-202ENST00000424239 1573 ntBASIC13.4□□□□□ -0.26
FOXA1P55317 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA1P55317 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
FOXA1P55317 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.27
FOXA1P55317 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC13.4□□□□□ -0.27
FOXA1P55317 TUBB1P2-201ENST00000422712 1306 ntBASIC13.39□□□□□ -0.27
FOXA1P55317 TUBB1P1-201ENST00000503144 1300 ntBASIC13.39□□□□□ -0.27
FOXA1P55317 MICA-210ENST00000616296 2260 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
FOXA1P55317 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA1P55317 AC007279.1-201ENST00000448547 837 ntBASIC13.39□□□□□ -0.27
FOXA1P55317 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA1P55317 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA1P55317 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA1P55317 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA1P55317 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC13.39□□□□□ -0.27
FOXA1P55317 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms