RNA–Protein interactions for RNA: ENST00000612778.4

MUC1-225, Transcript of mucin 1, cell surface associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MUC1, Length 1,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-225ENST00000612778 NISCHQ9Y2I1 1504 aa31.75■■■□□ 2.67
MUC1-225ENST00000612778 CCDC180Q9P1Z9 1646 aa27.73■■■□□ 2.03
MUC1-225ENST00000612778 ZCCHC6Q5VYS8 1495 aaKnown RBP26.61■■□□□ 1.85
MUC1-225ENST00000612778 ABCC9O60706 1549 aa26.52■■□□□ 1.84
MUC1-225ENST00000612778 DCAF8L2P0C7V8 631 aa26.36■■□□□ 1.81
MUC1-225ENST00000612778 DCAF1Q9Y4B6 1507 aa26.23■■□□□ 1.79
MUC1-225ENST00000612778 MYO15BQ96JP2 1530 aa26.02■■□□□ 1.76
MUC1-225ENST00000612778 NACADO15069 1562 aa25.93■■□□□ 1.74
MUC1-225ENST00000612778 SHROOM4Q9ULL8 1493 aa25.76■■□□□ 1.71
MUC1-225ENST00000612778 RB1CC1Q8TDY2 1594 aa25.76■■□□□ 1.71
MUC1-225ENST00000612778 SCRIBQ14160 1630 aa25.51■■□□□ 1.67
MUC1-225ENST00000612778 UNC13AQ9UPW8 1703 aa25.16■■□□□ 1.62
MUC1-225ENST00000612778 PABPN1Q86U42 306 aaKnown RBP eCLIP25■■□□□ 1.59
MUC1-225ENST00000612778 BICRAQ9NZM4 1560 aa25■■□□□ 1.59
MUC1-225ENST00000612778 CECR2Q9BXF3 1484 aa24.71■■□□□ 1.55
MUC1-225ENST00000612778 SUPT5HO00267 1087 aaKnown RBP24.68■■□□□ 1.54
MUC1-225ENST00000612778 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
MUC1-225ENST00000612778 MROH2BQ7Z745 1585 aa24.52■■□□□ 1.52
MUC1-225ENST00000612778 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
MUC1-225ENST00000612778 SMARCA4P51532 1647 aa24.43■■□□□ 1.5
MUC1-225ENST00000612778 WIZO95785 1651 aa24.28■■□□□ 1.48
MUC1-225ENST00000612778 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
MUC1-225ENST00000612778 PEG3Q9GZU2 1588 aa24.14■■□□□ 1.46
MUC1-225ENST00000612778 ATAD2BQ9ULI0 1458 aa24.13■■□□□ 1.45
MUC1-225ENST00000612778 SMARCA2P51531 1590 aa24.08■■□□□ 1.44
MUC1-225ENST00000612778 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
MUC1-225ENST00000612778 NCAPD3P42695 1498 aa23.96■■□□□ 1.43
MUC1-225ENST00000612778 BAZ1BQ9UIG0 1483 aaKnown RBP23.96■■□□□ 1.43
MUC1-225ENST00000612778 CC2D2AQ9P2K1 1620 aa23.96■■□□□ 1.43
MUC1-225ENST00000612778 HMGXB3Q12766 1538 aa23.87■■□□□ 1.41
MUC1-225ENST00000612778 CCDC88BA6NC98 1476 aa23.81■■□□□ 1.4
MUC1-225ENST00000612778 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
MUC1-225ENST00000612778 CHIC1Q5VXU3 224 aa23.49■■□□□ 1.35
MUC1-225ENST00000612778 CFTRP13569 1480 aa23.36■■□□□ 1.33
MUC1-225ENST00000612778 CADPSQ9ULU8 1353 aa23.35■■□□□ 1.33
MUC1-225ENST00000612778 TRIM41Q8WV44 630 aa23.22■■□□□ 1.31
MUC1-225ENST00000612778 ABCC8Q09428 1581 aa23.21■■□□□ 1.31
MUC1-225ENST00000612778 NESP48681 1621 aa23.21■■□□□ 1.31
MUC1-225ENST00000612778 LAMC3Q9Y6N6 1575 aa23.15■■□□□ 1.3
MUC1-225ENST00000612778 WRNQ14191 1432 aaPredicted RBP eCLIP23.11■■□□□ 1.29
MUC1-225ENST00000612778 PRDM2Q13029 1718 aa23.11■■□□□ 1.29
MUC1-225ENST00000612778 FANCD2Q9BXW9 1451 aa23.07■■□□□ 1.28
MUC1-225ENST00000612778 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
MUC1-225ENST00000612778 SYNJ1O43426 1573 aa23■■□□□ 1.27
MUC1-225ENST00000612778 CUX1P39880 1505 aa22.94■■□□□ 1.26
MUC1-225ENST00000612778 CEP164Q9UPV0 1460 aa22.94■■□□□ 1.26
MUC1-225ENST00000612778 TOP2BQ02880 1626 aa22.92■■□□□ 1.26
MUC1-225ENST00000612778 BIVM-ERCC5R4GMW8 1640 aa22.87■■□□□ 1.25
MUC1-225ENST00000612778 KIF21AQ7Z4S6 1674 aa22.86■■□□□ 1.25
MUC1-225ENST00000612778 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
MUC1-225ENST00000612778 URB2Q14146 1524 aaKnown RBP22.79■■□□□ 1.24
MUC1-225ENST00000612778 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
MUC1-225ENST00000612778 TOPBP1Q92547 1522 aa22.79■■□□□ 1.24
MUC1-225ENST00000612778 SOGA1O94964 1423 aa22.76■■□□□ 1.23
MUC1-225ENST00000612778 ERCC6Q03468 1493 aa22.75■■□□□ 1.23
MUC1-225ENST00000612778 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
MUC1-225ENST00000612778 MRC2Q9UBG0 1479 aa22.72■■□□□ 1.23
MUC1-225ENST00000612778 RUSC2Q8N2Y8 1516 aa22.69■■□□□ 1.22
MUC1-225ENST00000612778 POLA1P09884 1462 aaPredicted RBP22.66■■□□□ 1.22
MUC1-225ENST00000612778 EEA1Q15075 1411 aa22.63■■□□□ 1.21
MUC1-225ENST00000612778 LOC105371045A0A1W2PR82 267 aa22.6■■□□□ 1.21
MUC1-225ENST00000612778 RAD54L2Q9Y4B4 1467 aa22.6■■□□□ 1.21
MUC1-225ENST00000612778 WDR62O43379 1518 aa22.59■■□□□ 1.21
MUC1-225ENST00000612778 CSRNP3Q8WYN3 585 aa22.59■■□□□ 1.21
MUC1-225ENST00000612778 THOC2Q8NI27 1593 aaKnown RBP22.57■■□□□ 1.2
MUC1-225ENST00000612778 CUX2O14529 1486 aa22.55■■□□□ 1.2
MUC1-225ENST00000612778 KIF27Q86VH2 1401 aa22.55■■□□□ 1.2
MUC1-225ENST00000612778 ABCA10Q8WWZ4 1543 aa22.52■■□□□ 1.2
MUC1-225ENST00000612778 EHMT2Q96KQ7 1210 aa22.49■■□□□ 1.19
MUC1-225ENST00000612778 TARBP1Q13395 1621 aaKnown RBP22.44■■□□□ 1.18
MUC1-225ENST00000612778 TDRD9Q8NDG6 1382 aaKnown RBP22.42■■□□□ 1.18
MUC1-225ENST00000612778 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
MUC1-225ENST00000612778 WDR97A6NE52 1622 aa22.41■■□□□ 1.18
MUC1-225ENST00000612778 IGF1RP08069 1367 aa22.4■■□□□ 1.18
MUC1-225ENST00000612778 PRXQ9BXM0 1461 aa22.34■■□□□ 1.17
MUC1-225ENST00000612778 GAPVD1Q14C86 1478 aa22.33■■□□□ 1.17
MUC1-225ENST00000612778 ABCA5Q8WWZ7 1642 aa22.33■■□□□ 1.16
MUC1-225ENST00000612778 KIF21BO75037 1637 aa22.32■■□□□ 1.16
MUC1-225ENST00000612778 ZNF608Q9ULD9 1512 aaPredicted RBP22.31■■□□□ 1.16
MUC1-225ENST00000612778 AQRO60306 1485 aaKnown RBP eCLIP22.31■■□□□ 1.16
MUC1-225ENST00000612778 GOLGA3Q08378 1498 aa22.31■■□□□ 1.16
MUC1-225ENST00000612778 RAPGEF2Q9Y4G8 1499 aa22.3■■□□□ 1.16
MUC1-225ENST00000612778 UBTFP17480 764 aaKnown RBP22.27■■□□□ 1.16
MUC1-225ENST00000612778 CARMIL1Q5VZK9 1371 aa22.27■■□□□ 1.16
MUC1-225ENST00000612778 ERICH3Q5RHP9 1530 aa22.24■■□□□ 1.15
MUC1-225ENST00000612778 TNIKQ9UKE5 1360 aa22.22■■□□□ 1.15
MUC1-225ENST00000612778 GRIN2BQ13224 1484 aa22.2■■□□□ 1.14
MUC1-225ENST00000612778 EIF4G3O43432 1585 aaKnown RBP22.18■■□□□ 1.14
MUC1-225ENST00000612778 CUL7Q14999 1698 aa22.17■■□□□ 1.14
MUC1-225ENST00000612778 PBRM1Q86U86 1689 aa22.15■■□□□ 1.14
MUC1-225ENST00000612778 FHAD1B1AJZ9 1412 aa22.09■■□□□ 1.13
MUC1-225ENST00000612778 SNAPC4Q5SXM2 1469 aa22.07■■□□□ 1.12
MUC1-225ENST00000612778 CEP162Q5TB80 1403 aa22.07■■□□□ 1.12
MUC1-225ENST00000612778 ADAMTS12P58397 1594 aa22.06■■□□□ 1.12
MUC1-225ENST00000612778 MAGI1Q96QZ7 1491 aaPredicted RBP22.02■■□□□ 1.12
MUC1-225ENST00000612778 RANGAP1P46060 587 aaPredicted RBP22■■□□□ 1.11
MUC1-225ENST00000612778 CLIP1P30622 1438 aa21.97■■□□□ 1.11
MUC1-225ENST00000612778 SYNJ2O15056 1496 aa21.95■■□□□ 1.1
MUC1-225ENST00000612778 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
MUC1-225ENST00000612778 FBLN2P98095 1184 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms