RNA–Protein interactions for RNA: ENST00000579148.1

MIR3940-201, Transcript of microRNA 3940, humanhuman

BASIC

Gene MIR3940, Length 102 nt, Biotype miRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MIR3940-201ENST00000579148 NISCHQ9Y2I1 1504 aa32.09■■■□□ 2.73
MIR3940-201ENST00000579148 CCDC180Q9P1Z9 1646 aa28.15■■■□□ 2.1
MIR3940-201ENST00000579148 ZCCHC6Q5VYS8 1495 aaKnown RBP26.9■■□□□ 1.9
MIR3940-201ENST00000579148 ABCC9O60706 1549 aa26.75■■□□□ 1.87
MIR3940-201ENST00000579148 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
MIR3940-201ENST00000579148 MYO15BQ96JP2 1530 aa26.48■■□□□ 1.83
MIR3940-201ENST00000579148 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
MIR3940-201ENST00000579148 NACADO15069 1562 aa26.33■■□□□ 1.8
MIR3940-201ENST00000579148 RB1CC1Q8TDY2 1594 aa26.13■■□□□ 1.77
MIR3940-201ENST00000579148 SHROOM4Q9ULL8 1493 aa25.75■■□□□ 1.71
MIR3940-201ENST00000579148 SCRIBQ14160 1630 aa25.7■■□□□ 1.7
MIR3940-201ENST00000579148 UNC13AQ9UPW8 1703 aa25.38■■□□□ 1.65
MIR3940-201ENST00000579148 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
MIR3940-201ENST00000579148 PABPN1Q86U42 306 aaKnown RBP eCLIP25.13■■□□□ 1.61
MIR3940-201ENST00000579148 CECR2Q9BXF3 1484 aa24.85■■□□□ 1.57
MIR3940-201ENST00000579148 BAZ1AQ9NRL2 1556 aaPredicted RBP24.83■■□□□ 1.57
MIR3940-201ENST00000579148 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
MIR3940-201ENST00000579148 MROH2BQ7Z745 1585 aa24.7■■□□□ 1.54
MIR3940-201ENST00000579148 SMARCA4P51532 1647 aa24.68■■□□□ 1.54
MIR3940-201ENST00000579148 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
MIR3940-201ENST00000579148 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
MIR3940-201ENST00000579148 PEG3Q9GZU2 1588 aa24.49■■□□□ 1.51
MIR3940-201ENST00000579148 SMARCA2P51531 1590 aa24.42■■□□□ 1.5
MIR3940-201ENST00000579148 WIZO95785 1651 aa24.42■■□□□ 1.5
MIR3940-201ENST00000579148 ATAD2BQ9ULI0 1458 aa24.4■■□□□ 1.5
MIR3940-201ENST00000579148 NCAPD3P42695 1498 aa24.3■■□□□ 1.48
MIR3940-201ENST00000579148 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
MIR3940-201ENST00000579148 BAZ1BQ9UIG0 1483 aaKnown RBP24.24■■□□□ 1.47
MIR3940-201ENST00000579148 HMGXB3Q12766 1538 aa24.23■■□□□ 1.47
MIR3940-201ENST00000579148 CC2D2AQ9P2K1 1620 aa24.23■■□□□ 1.47
MIR3940-201ENST00000579148 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
MIR3940-201ENST00000579148 DNAJC5BQ9UF47 199 aa23.81■■□□□ 1.4
MIR3940-201ENST00000579148 CFTRP13569 1480 aa23.64■■□□□ 1.38
MIR3940-201ENST00000579148 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
MIR3940-201ENST00000579148 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
MIR3940-201ENST00000579148 LAMC3Q9Y6N6 1575 aa23.49■■□□□ 1.35
MIR3940-201ENST00000579148 PRDM2Q13029 1718 aa23.4■■□□□ 1.34
MIR3940-201ENST00000579148 NESP48681 1621 aa23.36■■□□□ 1.33
MIR3940-201ENST00000579148 PDS5BQ9NTI5 1447 aa23.35■■□□□ 1.33
MIR3940-201ENST00000579148 TRIM41Q8WV44 630 aa23.33■■□□□ 1.33
MIR3940-201ENST00000579148 WRNQ14191 1432 aaPredicted RBP eCLIP23.33■■□□□ 1.32
MIR3940-201ENST00000579148 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
MIR3940-201ENST00000579148 ABCC8Q09428 1581 aa23.3■■□□□ 1.32
MIR3940-201ENST00000579148 CEP164Q9UPV0 1460 aa23.23■■□□□ 1.31
MIR3940-201ENST00000579148 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
MIR3940-201ENST00000579148 SYNJ1O43426 1573 aa23.15■■□□□ 1.3
MIR3940-201ENST00000579148 CUX1P39880 1505 aa23.13■■□□□ 1.29
MIR3940-201ENST00000579148 BIVM-ERCC5R4GMW8 1640 aa23.13■■□□□ 1.29
MIR3940-201ENST00000579148 DNMBPQ6XZF7 1577 aa23.08■■□□□ 1.29
MIR3940-201ENST00000579148 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
MIR3940-201ENST00000579148 ERCC6Q03468 1493 aa23.03■■□□□ 1.28
MIR3940-201ENST00000579148 MRC2Q9UBG0 1479 aa23.03■■□□□ 1.28
MIR3940-201ENST00000579148 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
MIR3940-201ENST00000579148 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
MIR3940-201ENST00000579148 FGD5Q6ZNL6 1462 aa22.94■■□□□ 1.26
MIR3940-201ENST00000579148 EEA1Q15075 1411 aa22.93■■□□□ 1.26
MIR3940-201ENST00000579148 WDR62O43379 1518 aa22.92■■□□□ 1.26
MIR3940-201ENST00000579148 POLA1P09884 1462 aaPredicted RBP22.89■■□□□ 1.25
MIR3940-201ENST00000579148 THOC2Q8NI27 1593 aaKnown RBP22.85■■□□□ 1.25
MIR3940-201ENST00000579148 SOGA1O94964 1423 aa22.85■■□□□ 1.25
MIR3940-201ENST00000579148 ABCA10Q8WWZ4 1543 aa22.8■■□□□ 1.24
MIR3940-201ENST00000579148 KIF27Q86VH2 1401 aa22.8■■□□□ 1.24
MIR3940-201ENST00000579148 RAD54L2Q9Y4B4 1467 aa22.74■■□□□ 1.23
MIR3940-201ENST00000579148 FAM9AQ8IZU1 332 aaPredicted RBP22.74■■□□□ 1.23
MIR3940-201ENST00000579148 CUX2O14529 1486 aa22.73■■□□□ 1.23
MIR3940-201ENST00000579148 RUSC2Q8N2Y8 1516 aa22.73■■□□□ 1.23
MIR3940-201ENST00000579148 CSRNP3Q8WYN3 585 aa22.73■■□□□ 1.23
MIR3940-201ENST00000579148 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
MIR3940-201ENST00000579148 TARBP1Q13395 1621 aaKnown RBP22.69■■□□□ 1.22
MIR3940-201ENST00000579148 WDR97A6NE52 1622 aa22.66■■□□□ 1.22
MIR3940-201ENST00000579148 IGF1RP08069 1367 aa22.6■■□□□ 1.21
MIR3940-201ENST00000579148 ABCA5Q8WWZ7 1642 aa22.59■■□□□ 1.21
MIR3940-201ENST00000579148 TDRD9Q8NDG6 1382 aaKnown RBP22.57■■□□□ 1.2
MIR3940-201ENST00000579148 GAPVD1Q14C86 1478 aa22.57■■□□□ 1.2
MIR3940-201ENST00000579148 KIF21BO75037 1637 aa22.56■■□□□ 1.2
MIR3940-201ENST00000579148 PRXQ9BXM0 1461 aa22.55■■□□□ 1.2
MIR3940-201ENST00000579148 ERICH3Q5RHP9 1530 aa22.54■■□□□ 1.2
MIR3940-201ENST00000579148 GOLGA3Q08378 1498 aa22.52■■□□□ 1.2
MIR3940-201ENST00000579148 LOC105371045A0A1W2PR82 267 aa22.51■■□□□ 1.19
MIR3940-201ENST00000579148 GRIN2BQ13224 1484 aa22.48■■□□□ 1.19
MIR3940-201ENST00000579148 ZNF608Q9ULD9 1512 aaPredicted RBP22.48■■□□□ 1.19
MIR3940-201ENST00000579148 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.19
MIR3940-201ENST00000579148 CARMIL1Q5VZK9 1371 aa22.47■■□□□ 1.19
MIR3940-201ENST00000579148 CUL7Q14999 1698 aa22.46■■□□□ 1.19
MIR3940-201ENST00000579148 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
MIR3940-201ENST00000579148 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
MIR3940-201ENST00000579148 TNIKQ9UKE5 1360 aa22.4■■□□□ 1.18
MIR3940-201ENST00000579148 PBRM1Q86U86 1689 aa22.38■■□□□ 1.17
MIR3940-201ENST00000579148 FHAD1B1AJZ9 1412 aa22.37■■□□□ 1.17
MIR3940-201ENST00000579148 UBTFP17480 764 aaKnown RBP22.36■■□□□ 1.17
MIR3940-201ENST00000579148 MAGI1Q96QZ7 1491 aaPredicted RBP22.34■■□□□ 1.17
MIR3940-201ENST00000579148 EHMT2Q96KQ7 1210 aa22.32■■□□□ 1.16
MIR3940-201ENST00000579148 ADAMTS12P58397 1594 aa22.31■■□□□ 1.16
MIR3940-201ENST00000579148 SNAPC4Q5SXM2 1469 aa22.29■■□□□ 1.16
MIR3940-201ENST00000579148 SYNJ2O15056 1496 aa22.23■■□□□ 1.15
MIR3940-201ENST00000579148 CEP162Q5TB80 1403 aa22.2■■□□□ 1.14
MIR3940-201ENST00000579148 GRIN2AQ12879 1464 aa22.17■■□□□ 1.14
MIR3940-201ENST00000579148 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
MIR3940-201ENST00000579148 CLIP1P30622 1438 aa22.12■■□□□ 1.13
MIR3940-201ENST00000579148 CTTNBP2Q8WZ74 1663 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms