RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NISCHQ9Y2I1 1504 aa28.64■■■□□ 2.17
CCDC3-202ENST00000378839 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
CCDC3-202ENST00000378839 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
CCDC3-202ENST00000378839 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
CCDC3-202ENST00000378839 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
CCDC3-202ENST00000378839 SUPT5HO00267 1087 aaKnown RBP23.59■■□□□ 1.37
CCDC3-202ENST00000378839 DCAF1Q9Y4B6 1507 aa23.48■■□□□ 1.35
CCDC3-202ENST00000378839 ABCC9O60706 1549 aa22.97■■□□□ 1.27
CCDC3-202ENST00000378839 CHIC1Q5VXU3 224 aa22.88■■□□□ 1.25
CCDC3-202ENST00000378839 SCRIBQ14160 1630 aa22.88■■□□□ 1.25
CCDC3-202ENST00000378839 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
CCDC3-202ENST00000378839 NACADO15069 1562 aa22.62■■□□□ 1.21
CCDC3-202ENST00000378839 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
CCDC3-202ENST00000378839 CECR2Q9BXF3 1484 aa22.4■■□□□ 1.18
CCDC3-202ENST00000378839 RB1CC1Q8TDY2 1594 aa22.39■■□□□ 1.17
CCDC3-202ENST00000378839 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
CCDC3-202ENST00000378839 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
CCDC3-202ENST00000378839 WIZO95785 1651 aa22.15■■□□□ 1.14
CCDC3-202ENST00000378839 UNC13AQ9UPW8 1703 aa22.07■■□□□ 1.12
CCDC3-202ENST00000378839 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
CCDC3-202ENST00000378839 TRIM41Q8WV44 630 aa21.95■■□□□ 1.11
CCDC3-202ENST00000378839 PCGF6Q9BYE7 350 aa21.87■■□□□ 1.09
CCDC3-202ENST00000378839 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
CCDC3-202ENST00000378839 BICRAQ9NZM4 1560 aa21.82■■□□□ 1.08
CCDC3-202ENST00000378839 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
CCDC3-202ENST00000378839 PABPN1Q86U42 306 aaKnown RBP eCLIP21.8■■□□□ 1.08
CCDC3-202ENST00000378839 FAM9AQ8IZU1 332 aaPredicted RBP21.8■■□□□ 1.08
CCDC3-202ENST00000378839 TOP2AP11388 1531 aaKnown RBP21.75■■□□□ 1.07
CCDC3-202ENST00000378839 HRCP23327 699 aa21.71■■□□□ 1.07
CCDC3-202ENST00000378839 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
CCDC3-202ENST00000378839 SMARCA2P51531 1590 aa21.66■■□□□ 1.06
CCDC3-202ENST00000378839 EHMT2Q96KQ7 1210 aa21.64■■□□□ 1.05
CCDC3-202ENST00000378839 ABCC8Q09428 1581 aa21.57■■□□□ 1.04
CCDC3-202ENST00000378839 TRIM26Q12899 539 aaPredicted RBP21.48■■□□□ 1.03
CCDC3-202ENST00000378839 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
CCDC3-202ENST00000378839 PPARGC1BQ86YN6 1023 aaKnown RBP21.39■■□□□ 1.02
CCDC3-202ENST00000378839 ATAD2BQ9ULI0 1458 aa21.36■■□□□ 1.01
CCDC3-202ENST00000378839 SOGA1O94964 1423 aa21.32■■□□□ 1
CCDC3-202ENST00000378839 RUSC2Q8N2Y8 1516 aa21.27■□□□□ 0.99
CCDC3-202ENST00000378839 BAZ1BQ9UIG0 1483 aaKnown RBP21.22■□□□□ 0.99
CCDC3-202ENST00000378839 WRNQ14191 1432 aaPredicted RBP eCLIP21.16■□□□□ 0.98
CCDC3-202ENST00000378839 SYNJ1O43426 1573 aa21.15■□□□□ 0.98
CCDC3-202ENST00000378839 CSRNP3Q8WYN3 585 aa21.08■□□□□ 0.97
CCDC3-202ENST00000378839 CEP162Q5TB80 1403 aa21.04■□□□□ 0.96
CCDC3-202ENST00000378839 EEA1Q15075 1411 aa21.03■□□□□ 0.96
CCDC3-202ENST00000378839 TNIKQ9UKE5 1360 aa21.02■□□□□ 0.95
CCDC3-202ENST00000378839 NCAPD3P42695 1498 aa20.97■□□□□ 0.95
CCDC3-202ENST00000378839 HMGXB3Q12766 1538 aa20.93■□□□□ 0.94
CCDC3-202ENST00000378839 UBTFP17480 764 aaKnown RBP20.93■□□□□ 0.94
CCDC3-202ENST00000378839 GOLGA3Q08378 1498 aa20.91■□□□□ 0.94
CCDC3-202ENST00000378839 TOP2BQ02880 1626 aa20.86■□□□□ 0.93
CCDC3-202ENST00000378839 TTBK1Q5TCY1 1321 aaPredicted RBP20.86■□□□□ 0.93
CCDC3-202ENST00000378839 CC2D2AQ9P2K1 1620 aa20.84■□□□□ 0.93
CCDC3-202ENST00000378839 KIF21BO75037 1637 aa20.84■□□□□ 0.93
CCDC3-202ENST00000378839 CEP164Q9UPV0 1460 aa20.82■□□□□ 0.92
CCDC3-202ENST00000378839 BIVM-ERCC5R4GMW8 1640 aa20.8■□□□□ 0.92
CCDC3-202ENST00000378839 RAPGEF2Q9Y4G8 1499 aa20.79■□□□□ 0.92
CCDC3-202ENST00000378839 ZEB1P37275 1124 aaPredicted RBP20.79■□□□□ 0.92
CCDC3-202ENST00000378839 CUX1P39880 1505 aa20.76■□□□□ 0.91
CCDC3-202ENST00000378839 CFTRP13569 1480 aa20.74■□□□□ 0.91
CCDC3-202ENST00000378839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.73■□□□□ 0.91
CCDC3-202ENST00000378839 CLIP1P30622 1438 aa20.68■□□□□ 0.9
CCDC3-202ENST00000378839 RANGAP1P46060 587 aaPredicted RBP20.61■□□□□ 0.89
CCDC3-202ENST00000378839 PRXQ9BXM0 1461 aa20.61■□□□□ 0.89
CCDC3-202ENST00000378839 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.89
CCDC3-202ENST00000378839 VPS8Q8N3P4 1428 aa20.57■□□□□ 0.88
CCDC3-202ENST00000378839 CCER1Q8TC90 406 aaPredicted RBP20.56■□□□□ 0.88
CCDC3-202ENST00000378839 PRDM2Q13029 1718 aa20.53■□□□□ 0.88
CCDC3-202ENST00000378839 ERICH3Q5RHP9 1530 aa20.53■□□□□ 0.88
CCDC3-202ENST00000378839 CADPSQ9ULU8 1353 aa20.53■□□□□ 0.88
CCDC3-202ENST00000378839 KIF27Q86VH2 1401 aa20.49■□□□□ 0.87
CCDC3-202ENST00000378839 ARAP1Q96P48 1450 aa20.46■□□□□ 0.87
CCDC3-202ENST00000378839 CUX2O14529 1486 aa20.38■□□□□ 0.85
CCDC3-202ENST00000378839 IGF1RP08069 1367 aa20.38■□□□□ 0.85
CCDC3-202ENST00000378839 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
CCDC3-202ENST00000378839 HNRNPUL2Q1KMD3 747 aaKnown RBP20.36■□□□□ 0.85
CCDC3-202ENST00000378839 NESP48681 1621 aa20.34■□□□□ 0.85
CCDC3-202ENST00000378839 FANCD2Q9BXW9 1451 aa20.33■□□□□ 0.85
CCDC3-202ENST00000378839 KANK4Q5T7N3 995 aaPredicted RBP20.32■□□□□ 0.84
CCDC3-202ENST00000378839 ARHGAP35Q9NRY4 1499 aa20.31■□□□□ 0.84
CCDC3-202ENST00000378839 APLP2Q06481 763 aa20.3■□□□□ 0.84
CCDC3-202ENST00000378839 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
CCDC3-202ENST00000378839 CARMIL1Q5VZK9 1371 aa20.23■□□□□ 0.83
CCDC3-202ENST00000378839 TOPBP1Q92547 1522 aa20.2■□□□□ 0.82
CCDC3-202ENST00000378839 DNMBPQ6XZF7 1577 aa20.19■□□□□ 0.82
CCDC3-202ENST00000378839 POLA1P09884 1462 aaPredicted RBP20.18■□□□□ 0.82
CCDC3-202ENST00000378839 ABCA10Q8WWZ4 1543 aa20.13■□□□□ 0.81
CCDC3-202ENST00000378839 LAMC3Q9Y6N6 1575 aa20.12■□□□□ 0.81
CCDC3-202ENST00000378839 URB2Q14146 1524 aaKnown RBP20.11■□□□□ 0.81
CCDC3-202ENST00000378839 RRBP1Q9P2E9 1410 aaKnown RBP20.08■□□□□ 0.81
CCDC3-202ENST00000378839 DIEXFQ68CQ4 756 aaKnown RBP20.04■□□□□ 0.8
CCDC3-202ENST00000378839 P3H3Q8IVL6 736 aa20.03■□□□□ 0.8
CCDC3-202ENST00000378839 WDR97A6NE52 1622 aa20.01■□□□□ 0.79
CCDC3-202ENST00000378839 TIAM1Q13009 1591 aa20.01■□□□□ 0.79
CCDC3-202ENST00000378839 DHX57Q6P158 1386 aaKnown RBP19.99■□□□□ 0.79
CCDC3-202ENST00000378839 CCNB3Q8WWL7 1395 aa19.97■□□□□ 0.79
CCDC3-202ENST00000378839 ZNF316A6NFI3 1004 aaPredicted RBP19.97■□□□□ 0.79
CCDC3-202ENST00000378839 TDRD9Q8NDG6 1382 aaKnown RBP19.97■□□□□ 0.79
CCDC3-202ENST00000378839 FHOD3Q2V2M9 1422 aa19.96■□□□□ 0.79
CCDC3-202ENST00000378839 KIF21AQ7Z4S6 1674 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms