RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 DCAF8L2P0C7V8 631 aa25.58■■□□□ 1.69
TRAF1-201ENST00000373887 SUPT5HO00267 1087 aaKnown RBP23.78■■□□□ 1.4
TRAF1-201ENST00000373887 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.37
TRAF1-201ENST00000373887 SHROOM4Q9ULL8 1493 aa23.58■■□□□ 1.37
TRAF1-201ENST00000373887 EHMT2Q96KQ7 1210 aa23.47■■□□□ 1.35
TRAF1-201ENST00000373887 PELP1Q8IZL8 1130 aaKnown RBP22.95■■□□□ 1.26
TRAF1-201ENST00000373887 FAM9AQ8IZU1 332 aaPredicted RBP22.57■■□□□ 1.2
TRAF1-201ENST00000373887 TTBK1Q5TCY1 1321 aaPredicted RBP22.54■■□□□ 1.2
TRAF1-201ENST00000373887 RANGAP1P46060 587 aaPredicted RBP22.46■■□□□ 1.19
TRAF1-201ENST00000373887 APLP2Q06481 763 aa22.44■■□□□ 1.18
TRAF1-201ENST00000373887 ERICH6Q7L0X2 663 aa22.31■■□□□ 1.16
TRAF1-201ENST00000373887 ATP1B4Q9UN42 357 aaPredicted RBP22.18■■□□□ 1.14
TRAF1-201ENST00000373887 CCER1Q8TC90 406 aaPredicted RBP21.93■■□□□ 1.1
TRAF1-201ENST00000373887 PCGF6Q9BYE7 350 aa21.86■■□□□ 1.09
TRAF1-201ENST00000373887 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
TRAF1-201ENST00000373887 CENPBP07199 599 aaPredicted RBP21.79■■□□□ 1.08
TRAF1-201ENST00000373887 UBTFP17480 764 aaKnown RBP21.75■■□□□ 1.07
TRAF1-201ENST00000373887 MYT1Q01538 1121 aa21.59■■□□□ 1.05
TRAF1-201ENST00000373887 YTHDC1Q96MU7 727 aaKnown RBP21.58■■□□□ 1.05
TRAF1-201ENST00000373887 PPARGC1BQ86YN6 1023 aaKnown RBP21.54■■□□□ 1.04
TRAF1-201ENST00000373887 NEFLP07196 543 aa21.51■■□□□ 1.03
TRAF1-201ENST00000373887 MYT1LQ9UL68 1186 aa21.46■■□□□ 1.03
TRAF1-201ENST00000373887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.4■■□□□ 1.02
TRAF1-201ENST00000373887 HNRNPUL2Q1KMD3 747 aaKnown RBP21.4■■□□□ 1.02
TRAF1-201ENST00000373887 ZEB1P37275 1124 aaPredicted RBP21.31■■□□□ 1
TRAF1-201ENST00000373887 CHIC1Q5VXU3 224 aa21.27■■□□□ 1
TRAF1-201ENST00000373887 ITGAEP38570 1179 aa21.24■□□□□ 0.99
TRAF1-201ENST00000373887 PABPN1Q86U42 306 aaKnown RBP eCLIP21.2■□□□□ 0.98
TRAF1-201ENST00000373887 DAXXQ9UER7 740 aaPredicted RBP21.16■□□□□ 0.98
TRAF1-201ENST00000373887 ABCC9O60706 1549 aa21.15■□□□□ 0.98
TRAF1-201ENST00000373887 POLR3GLQ9BT43 218 aa21.07■□□□□ 0.96
TRAF1-201ENST00000373887 CNGB1Q14028 1251 aaPredicted RBP20.99■□□□□ 0.95
TRAF1-201ENST00000373887 LOC105371045A0A1W2PR82 267 aa20.89■□□□□ 0.94
TRAF1-201ENST00000373887 SLC4A1APQ9BWU0 796 aaKnown RBP20.8■□□□□ 0.92
TRAF1-201ENST00000373887 FBLN2P98095 1184 aa20.77■□□□□ 0.92
TRAF1-201ENST00000373887 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
TRAF1-201ENST00000373887 RTL5Q5HYW3 569 aaPredicted RBP20.61■□□□□ 0.89
TRAF1-201ENST00000373887 TRIM26Q12899 539 aaPredicted RBP20.61■□□□□ 0.89
TRAF1-201ENST00000373887 FAM50AQ14320 339 aaKnown RBP20.6■□□□□ 0.89
TRAF1-201ENST00000373887 CLSPNQ9HAW4 1339 aa20.59■□□□□ 0.89
TRAF1-201ENST00000373887 ARID3CA6NKF2 412 aa20.52■□□□□ 0.88
TRAF1-201ENST00000373887 HRCP23327 699 aa20.5■□□□□ 0.87
TRAF1-201ENST00000373887 TRIM52Q96A61 297 aa20.49■□□□□ 0.87
TRAF1-201ENST00000373887 P3H3Q8IVL6 736 aa20.37■□□□□ 0.85
TRAF1-201ENST00000373887 NEUROD1Q13562 356 aa20.35■□□□□ 0.85
TRAF1-201ENST00000373887 ZNF326Q5BKZ1 582 aaKnown RBP20.34■□□□□ 0.85
TRAF1-201ENST00000373887 PLPPR3Q6T4P5 718 aa20.29■□□□□ 0.84
TRAF1-201ENST00000373887 BCANQ96GW7 911 aa20.28■□□□□ 0.84
TRAF1-201ENST00000373887 BCL11AQ9H165 835 aa20.22■□□□□ 0.83
TRAF1-201ENST00000373887 ZNF777Q9ULD5 760 aaPredicted RBP20.17■□□□□ 0.82
TRAF1-201ENST00000373887 SLC24A1O60721 1099 aa20.14■□□□□ 0.81
TRAF1-201ENST00000373887 DIEXFQ68CQ4 756 aaKnown RBP20.14■□□□□ 0.81
TRAF1-201ENST00000373887 SCRIBQ14160 1630 aa20.07■□□□□ 0.8
TRAF1-201ENST00000373887 ZBTB47Q9UFB7 747 aaPredicted RBP20.07■□□□□ 0.8
TRAF1-201ENST00000373887 CDK11AQ9UQ88 783 aaPredicted RBP19.98■□□□□ 0.79
TRAF1-201ENST00000373887 ESF1Q9H501 851 aaKnown RBP19.94■□□□□ 0.78
TRAF1-201ENST00000373887 GTF3C3Q9Y5Q9 886 aa19.93■□□□□ 0.78
TRAF1-201ENST00000373887 CANXP27824 592 aaKnown RBP19.93■□□□□ 0.78
TRAF1-201ENST00000373887 CHGAP10645 457 aaKnown RBP19.9■□□□□ 0.78
TRAF1-201ENST00000373887 STAG3Q9UJ98 1225 aa19.84■□□□□ 0.77
TRAF1-201ENST00000373887 NPM1P06748 294 aaKnown RBP eCLIP19.84■□□□□ 0.77
TRAF1-201ENST00000373887 ANP32CO43423 234 aa19.82■□□□□ 0.76
TRAF1-201ENST00000373887 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
TRAF1-201ENST00000373887 EIF5BO60841 1220 aaKnown RBP19.82■□□□□ 0.76
TRAF1-201ENST00000373887 NPM2Q86SE8 214 aaKnown RBP19.81■□□□□ 0.76
TRAF1-201ENST00000373887 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
TRAF1-201ENST00000373887 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.72■□□□□ 0.75
TRAF1-201ENST00000373887 ANP32AP39687 249 aaKnown RBP19.7■□□□□ 0.74
TRAF1-201ENST00000373887 CHIC2Q9UKJ5 165 aa19.67■□□□□ 0.74
TRAF1-201ENST00000373887 NEFMP07197 916 aa19.66■□□□□ 0.74
TRAF1-201ENST00000373887 CHMP7Q8WUX9 453 aaPredicted RBP19.64■□□□□ 0.74
TRAF1-201ENST00000373887 PLEKHG5O94827 1062 aa19.62■□□□□ 0.73
TRAF1-201ENST00000373887 SCAF1Q9H7N4 1312 aaKnown RBP19.6■□□□□ 0.73
TRAF1-201ENST00000373887 ANP32BQ92688 251 aaKnown RBP19.6■□□□□ 0.73
TRAF1-201ENST00000373887 HSP90AA1P07900 732 aaKnown RBP19.56■□□□□ 0.72
TRAF1-201ENST00000373887 KCNH8Q96L42 1107 aa19.54■□□□□ 0.72
TRAF1-201ENST00000373887 ARXQ96QS3 562 aa19.5■□□□□ 0.71
TRAF1-201ENST00000373887 A0A0G2JS52 829 aa19.48■□□□□ 0.71
TRAF1-201ENST00000373887 KDM2AQ9Y2K7 1162 aa19.46■□□□□ 0.71
TRAF1-201ENST00000373887 ZBTB7CA1YPR0 619 aa19.44■□□□□ 0.7
TRAF1-201ENST00000373887 ZCCHC6Q5VYS8 1495 aaKnown RBP19.44■□□□□ 0.7
TRAF1-201ENST00000373887 SALL2Q9Y467 1007 aaPredicted RBP19.43■□□□□ 0.7
TRAF1-201ENST00000373887 NBR1Q14596 966 aa19.39■□□□□ 0.69
TRAF1-201ENST00000373887 GLIPR1L2Q4G1C9 344 aa19.39■□□□□ 0.69
TRAF1-201ENST00000373887 TONSLQ96HA7 1378 aa19.39■□□□□ 0.69
TRAF1-201ENST00000373887 FKBP8Q14318 412 aa19.39■□□□□ 0.69
TRAF1-201ENST00000373887 ACIN1Q9UKV3 1341 aaKnown RBP19.37■□□□□ 0.69
TRAF1-201ENST00000373887 ARID4BQ4LE39 1312 aaPredicted RBP19.37■□□□□ 0.69
TRAF1-201ENST00000373887 RB1CC1Q8TDY2 1594 aa19.36■□□□□ 0.69
TRAF1-201ENST00000373887 TSPY4P0CV99 314 aa19.36■□□□□ 0.69
TRAF1-201ENST00000373887 TSPY10P0CW01 314 aa19.36■□□□□ 0.69
TRAF1-201ENST00000373887 UPF2Q9HAU5 1272 aaKnown RBP19.34■□□□□ 0.69
TRAF1-201ENST00000373887 C14orf37Q86TY3 774 aa19.34■□□□□ 0.69
TRAF1-201ENST00000373887 MTUS2Q5JR59 1369 aa19.31■□□□□ 0.68
TRAF1-201ENST00000373887 FAM9BQ8IZU0 186 aa19.29■□□□□ 0.68
TRAF1-201ENST00000373887 ERCC6Q03468 1493 aa19.29■□□□□ 0.68
TRAF1-201ENST00000373887 RRP7BPQ9NSQ0 103 aa19.29■□□□□ 0.68
TRAF1-201ENST00000373887 PPP1R15AO75807 674 aaPredicted RBP19.28■□□□□ 0.68
TRAF1-201ENST00000373887 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
TRAF1-201ENST00000373887 DDX10Q13206 875 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms