RNA–Protein interactions for RNA: ENST00000374379.8

CLIC4-201, Transcript of chloride intracellular channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIC4, Length 4,346 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-201ENST00000374379 NISCHQ9Y2I1 1504 aa26.03■■□□□ 1.76
CLIC4-201ENST00000374379 DCAF8L2P0C7V8 631 aa24.4■■□□□ 1.5
CLIC4-201ENST00000374379 SHROOM4Q9ULL8 1493 aa23.86■■□□□ 1.41
CLIC4-201ENST00000374379 SUPT5HO00267 1087 aaKnown RBP23.68■■□□□ 1.38
CLIC4-201ENST00000374379 EHMT2Q96KQ7 1210 aa22.5■■□□□ 1.19
CLIC4-201ENST00000374379 FAM9AQ8IZU1 332 aaPredicted RBP22.17■■□□□ 1.14
CLIC4-201ENST00000374379 PCGF6Q9BYE7 350 aa21.93■■□□□ 1.1
CLIC4-201ENST00000374379 CHIC1Q5VXU3 224 aa21.89■■□□□ 1.1
CLIC4-201ENST00000374379 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
CLIC4-201ENST00000374379 ABCC9O60706 1549 aa21.76■■□□□ 1.07
CLIC4-201ENST00000374379 ZCCHC6Q5VYS8 1495 aaKnown RBP21.74■■□□□ 1.07
CLIC4-201ENST00000374379 LOC105371045A0A1W2PR82 267 aa21.74■■□□□ 1.07
CLIC4-201ENST00000374379 TTBK1Q5TCY1 1321 aaPredicted RBP21.65■■□□□ 1.06
CLIC4-201ENST00000374379 CCDC180Q9P1Z9 1646 aa21.5■■□□□ 1.03
CLIC4-201ENST00000374379 PPARGC1BQ86YN6 1023 aaKnown RBP21.45■■□□□ 1.02
CLIC4-201ENST00000374379 RANGAP1P46060 587 aaPredicted RBP21.39■■□□□ 1.01
CLIC4-201ENST00000374379 PABPN1Q86U42 306 aaKnown RBP eCLIP21.33■■□□□ 1.01
CLIC4-201ENST00000374379 SCRIBQ14160 1630 aa21.24■□□□□ 0.99
CLIC4-201ENST00000374379 UBTFP17480 764 aaKnown RBP21.19■□□□□ 0.98
CLIC4-201ENST00000374379 HRCP23327 699 aa21.08■□□□□ 0.96
CLIC4-201ENST00000374379 TRIM26Q12899 539 aaPredicted RBP21.05■□□□□ 0.96
CLIC4-201ENST00000374379 APLP2Q06481 763 aa21.05■□□□□ 0.96
CLIC4-201ENST00000374379 MYO15BQ96JP2 1530 aa21.01■□□□□ 0.95
CLIC4-201ENST00000374379 CCER1Q8TC90 406 aaPredicted RBP20.93■□□□□ 0.94
CLIC4-201ENST00000374379 RSF1Q96T23 1441 aaPredicted RBP20.8■□□□□ 0.92
CLIC4-201ENST00000374379 ATP1B4Q9UN42 357 aaPredicted RBP20.73■□□□□ 0.91
CLIC4-201ENST00000374379 ZEB1P37275 1124 aaPredicted RBP20.71■□□□□ 0.91
CLIC4-201ENST00000374379 DCAF1Q9Y4B6 1507 aa20.69■□□□□ 0.9
CLIC4-201ENST00000374379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.65■□□□□ 0.9
CLIC4-201ENST00000374379 CECR2Q9BXF3 1484 aa20.64■□□□□ 0.89
CLIC4-201ENST00000374379 HNRNPUL2Q1KMD3 747 aaKnown RBP20.58■□□□□ 0.88
CLIC4-201ENST00000374379 NACADO15069 1562 aa20.49■□□□□ 0.87
CLIC4-201ENST00000374379 ITGAEP38570 1179 aa20.47■□□□□ 0.87
CLIC4-201ENST00000374379 RB1CC1Q8TDY2 1594 aa20.45■□□□□ 0.86
CLIC4-201ENST00000374379 CSRNP3Q8WYN3 585 aa20.43■□□□□ 0.86
CLIC4-201ENST00000374379 MROH2BQ7Z745 1585 aa20.36■□□□□ 0.85
CLIC4-201ENST00000374379 YTHDC1Q96MU7 727 aaKnown RBP20.3■□□□□ 0.84
CLIC4-201ENST00000374379 BAZ1AQ9NRL2 1556 aaPredicted RBP20.14■□□□□ 0.81
CLIC4-201ENST00000374379 WIZO95785 1651 aa20.13■□□□□ 0.81
CLIC4-201ENST00000374379 P3H3Q8IVL6 736 aa20.1■□□□□ 0.81
CLIC4-201ENST00000374379 CENPBP07199 599 aaPredicted RBP20.09■□□□□ 0.81
CLIC4-201ENST00000374379 DIEXFQ68CQ4 756 aaKnown RBP20.02■□□□□ 0.8
CLIC4-201ENST00000374379 ABCC8Q09428 1581 aa20.02■□□□□ 0.8
CLIC4-201ENST00000374379 SOGA1O94964 1423 aa20■□□□□ 0.79
CLIC4-201ENST00000374379 CCDC88BA6NC98 1476 aa20■□□□□ 0.79
CLIC4-201ENST00000374379 FAM50AQ14320 339 aaKnown RBP19.98■□□□□ 0.79
CLIC4-201ENST00000374379 WRNQ14191 1432 aaPredicted RBP eCLIP19.97■□□□□ 0.79
CLIC4-201ENST00000374379 BAZ1BQ9UIG0 1483 aaKnown RBP19.95■□□□□ 0.78
CLIC4-201ENST00000374379 CEP162Q5TB80 1403 aa19.93■□□□□ 0.78
CLIC4-201ENST00000374379 ARID3CA6NKF2 412 aa19.86■□□□□ 0.77
CLIC4-201ENST00000374379 CLIP1P30622 1438 aa19.82■□□□□ 0.76
CLIC4-201ENST00000374379 NEUROD1Q13562 356 aa19.8■□□□□ 0.76
CLIC4-201ENST00000374379 GOLGA3Q08378 1498 aa19.75■□□□□ 0.75
CLIC4-201ENST00000374379 TNIKQ9UKE5 1360 aa19.75■□□□□ 0.75
CLIC4-201ENST00000374379 TOP2AP11388 1531 aaKnown RBP19.74■□□□□ 0.75
CLIC4-201ENST00000374379 SMARCA4P51532 1647 aa19.72■□□□□ 0.75
CLIC4-201ENST00000374379 RUSC2Q8N2Y8 1516 aa19.72■□□□□ 0.75
CLIC4-201ENST00000374379 ZNF316A6NFI3 1004 aaPredicted RBP19.71■□□□□ 0.75
CLIC4-201ENST00000374379 FBLN2P98095 1184 aa19.7■□□□□ 0.74
CLIC4-201ENST00000374379 EEA1Q15075 1411 aa19.7■□□□□ 0.74
CLIC4-201ENST00000374379 CNGB1Q14028 1251 aaPredicted RBP19.65■□□□□ 0.74
CLIC4-201ENST00000374379 CEP164Q9UPV0 1460 aa19.61■□□□□ 0.73
CLIC4-201ENST00000374379 ATAD2BQ9ULI0 1458 aa19.59■□□□□ 0.73
CLIC4-201ENST00000374379 TRIM52Q96A61 297 aa19.57■□□□□ 0.72
CLIC4-201ENST00000374379 POLR3GLQ9BT43 218 aa19.57■□□□□ 0.72
CLIC4-201ENST00000374379 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
CLIC4-201ENST00000374379 GTF3C3Q9Y5Q9 886 aa19.55■□□□□ 0.72
CLIC4-201ENST00000374379 SMARCA2P51531 1590 aa19.54■□□□□ 0.72
CLIC4-201ENST00000374379 KIF27Q86VH2 1401 aa19.52■□□□□ 0.71
CLIC4-201ENST00000374379 KANK4Q5T7N3 995 aaPredicted RBP19.44■□□□□ 0.7
CLIC4-201ENST00000374379 ACIN1Q9UKV3 1341 aaKnown RBP19.43■□□□□ 0.7
CLIC4-201ENST00000374379 CUX2O14529 1486 aa19.42■□□□□ 0.7
CLIC4-201ENST00000374379 RAPGEF2Q9Y4G8 1499 aa19.42■□□□□ 0.7
CLIC4-201ENST00000374379 CHIC2Q9UKJ5 165 aa19.41■□□□□ 0.7
CLIC4-201ENST00000374379 MIER1Q8N108 512 aa19.37■□□□□ 0.69
CLIC4-201ENST00000374379 HIRIP3Q9BW71 556 aaPredicted RBP19.37■□□□□ 0.69
CLIC4-201ENST00000374379 ZNF777Q9ULD5 760 aaPredicted RBP19.36■□□□□ 0.69
CLIC4-201ENST00000374379 MYT1LQ9UL68 1186 aa19.36■□□□□ 0.69
CLIC4-201ENST00000374379 VPS8Q8N3P4 1428 aa19.34■□□□□ 0.69
CLIC4-201ENST00000374379 ZNF326Q5BKZ1 582 aaKnown RBP19.34■□□□□ 0.69
CLIC4-201ENST00000374379 NEFLP07196 543 aa19.33■□□□□ 0.69
CLIC4-201ENST00000374379 CARMIL1Q5VZK9 1371 aa19.33■□□□□ 0.68
CLIC4-201ENST00000374379 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
CLIC4-201ENST00000374379 MTUS2Q5JR59 1369 aa19.29■□□□□ 0.68
CLIC4-201ENST00000374379 DDX10Q13206 875 aaKnown RBP19.27■□□□□ 0.67
CLIC4-201ENST00000374379 BCANQ96GW7 911 aa19.24■□□□□ 0.67
CLIC4-201ENST00000374379 CADPSQ9ULU8 1353 aa19.23■□□□□ 0.67
CLIC4-201ENST00000374379 RRP7BPQ9NSQ0 103 aa19.22■□□□□ 0.67
CLIC4-201ENST00000374379 BICRAQ9NZM4 1560 aa19.22■□□□□ 0.67
CLIC4-201ENST00000374379 TDRD9Q8NDG6 1382 aaKnown RBP19.22■□□□□ 0.67
CLIC4-201ENST00000374379 SIN3AQ96ST3 1273 aa19.21■□□□□ 0.67
CLIC4-201ENST00000374379 SYNJ1O43426 1573 aa19.18■□□□□ 0.66
CLIC4-201ENST00000374379 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
CLIC4-201ENST00000374379 ANP32CO43423 234 aa19.15■□□□□ 0.66
CLIC4-201ENST00000374379 CHMP7Q8WUX9 453 aaPredicted RBP19.15■□□□□ 0.66
CLIC4-201ENST00000374379 TONSLQ96HA7 1378 aa19.15■□□□□ 0.66
CLIC4-201ENST00000374379 EIF4G1Q04637 1599 aaKnown RBP19.13■□□□□ 0.65
CLIC4-201ENST00000374379 CDK11AQ9UQ88 783 aaPredicted RBP19.1■□□□□ 0.65
CLIC4-201ENST00000374379 UNC13AQ9UPW8 1703 aa19.09■□□□□ 0.65
CLIC4-201ENST00000374379 NCAPD3P42695 1498 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms