Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
HMGCS2P54868 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
HMGCS2P54868 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.79■■■□□ 2.84
HMGCS2P54868 AL162393.1-201ENST00000437852 946 ntBASIC32.77■■■□□ 2.84
HMGCS2P54868 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
HMGCS2P54868 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.76■■■□□ 2.83
HMGCS2P54868 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.75■■■□□ 2.83
HMGCS2P54868 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.73■■■□□ 2.83
HMGCS2P54868 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.73■■■□□ 2.83
HMGCS2P54868 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.72■■■□□ 2.83
HMGCS2P54868 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
HMGCS2P54868 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.71■■■□□ 2.83
HMGCS2P54868 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
HMGCS2P54868 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
HMGCS2P54868 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
HMGCS2P54868 AP006261.1-201ENST00000584783 668 ntBASIC32.67■■■□□ 2.82
HMGCS2P54868 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.65■■■□□ 2.82
HMGCS2P54868 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
HMGCS2P54868 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
HMGCS2P54868 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
HMGCS2P54868 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
HMGCS2P54868 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.63■■■□□ 2.81
HMGCS2P54868 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.62■■■□□ 2.81
HMGCS2P54868 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
HMGCS2P54868 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
HMGCS2P54868 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.61■■■□□ 2.81
HMGCS2P54868 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
HMGCS2P54868 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.59■■■□□ 2.81
HMGCS2P54868 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.59■■■□□ 2.81
HMGCS2P54868 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
HMGCS2P54868 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.59■■■□□ 2.81
HMGCS2P54868 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
HMGCS2P54868 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.57■■■□□ 2.8
HMGCS2P54868 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
HMGCS2P54868 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
HMGCS2P54868 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.53■■■□□ 2.8
HMGCS2P54868 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.53■■■□□ 2.8
HMGCS2P54868 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
HMGCS2P54868 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.79
HMGCS2P54868 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
HMGCS2P54868 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.49■■■□□ 2.79
HMGCS2P54868 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
HMGCS2P54868 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
HMGCS2P54868 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
HMGCS2P54868 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
HMGCS2P54868 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.44■■■□□ 2.78
HMGCS2P54868 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.43■■■□□ 2.78
HMGCS2P54868 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.42■■■□□ 2.78
HMGCS2P54868 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.42■■■□□ 2.78
HMGCS2P54868 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.41■■■□□ 2.78
HMGCS2P54868 MIR3665-201ENST00000578708 105 ntBASIC32.41■■■□□ 2.78
HMGCS2P54868 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
HMGCS2P54868 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.77
HMGCS2P54868 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
HMGCS2P54868 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.38■■■□□ 2.77
HMGCS2P54868 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.37■■■□□ 2.77
HMGCS2P54868 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
HMGCS2P54868 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.36■■■□□ 2.77
HMGCS2P54868 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
HMGCS2P54868 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
HMGCS2P54868 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
HMGCS2P54868 DUX4L28-201ENST00000623687 678 ntBASIC32.33■■■□□ 2.77
HMGCS2P54868 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC32.32■■■□□ 2.76
HMGCS2P54868 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
HMGCS2P54868 AC087741.3-201ENST00000624270 1347 ntBASIC32.3■■■□□ 2.76
HMGCS2P54868 MIR762-201ENST00000390236 83 ntBASIC32.3■■■□□ 2.76
HMGCS2P54868 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
HMGCS2P54868 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.3■■■□□ 2.76
HMGCS2P54868 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.29■■■□□ 2.76
HMGCS2P54868 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
HMGCS2P54868 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
HMGCS2P54868 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.26■■■□□ 2.76
HMGCS2P54868 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.24■■■□□ 2.75
HMGCS2P54868 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.24■■■□□ 2.75
HMGCS2P54868 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.23■■■□□ 2.75
HMGCS2P54868 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32.22■■■□□ 2.75
HMGCS2P54868 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
HMGCS2P54868 AC005559.1-201ENST00000589661 871 ntBASIC32.21■■■□□ 2.75
HMGCS2P54868 ABHD17AP4-201ENST00000411545 909 ntBASIC32.19■■■□□ 2.74
HMGCS2P54868 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.17■■■□□ 2.74
HMGCS2P54868 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
HMGCS2P54868 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
HMGCS2P54868 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
HMGCS2P54868 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
HMGCS2P54868 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
HMGCS2P54868 AC044849.2-201ENST00000606596 710 ntBASIC32.13■■■□□ 2.73
HMGCS2P54868 MIR7108-201ENST00000614319 87 ntBASIC32.13■■■□□ 2.73
HMGCS2P54868 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.12■■■□□ 2.73
HMGCS2P54868 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.11■■■□□ 2.73
HMGCS2P54868 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.11■■■□□ 2.73
HMGCS2P54868 MLEC-202ENST00000412616 841 ntTSL 3 BASIC32.09■■■□□ 2.73
HMGCS2P54868 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
HMGCS2P54868 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC32.08■■■□□ 2.73
HMGCS2P54868 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
HMGCS2P54868 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
HMGCS2P54868 WASH5P-204ENST00000632292 975 ntBASIC32.06■■■□□ 2.72
HMGCS2P54868 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC32.06■■■□□ 2.72
HMGCS2P54868 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
HMGCS2P54868 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
HMGCS2P54868 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms