Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC40.49■■■■■ 4.07
HMGCS2P54868 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC39.86■■■■□ 3.97
HMGCS2P54868 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC39.4■■■■□ 3.9
HMGCS2P54868 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC39.27■■■■□ 3.88
HMGCS2P54868 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
HMGCS2P54868 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC38.99■■■■□ 3.83
HMGCS2P54868 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
HMGCS2P54868 AL356512.1-201ENST00000607453 1739 ntBASIC38.75■■■■□ 3.79
HMGCS2P54868 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC38.23■■■■□ 3.71
HMGCS2P54868 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC38.04■■■■□ 3.68
HMGCS2P54868 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC37.98■■■■□ 3.67
HMGCS2P54868 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC37.93■■■■□ 3.66
HMGCS2P54868 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC37.81■■■■□ 3.64
HMGCS2P54868 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC37.77■■■■□ 3.64
HMGCS2P54868 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC37.75■■■■□ 3.63
HMGCS2P54868 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
HMGCS2P54868 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC37.57■■■■□ 3.6
HMGCS2P54868 HES6-203ENST00000409160 1600 ntTSL 2 BASIC37.44■■■■□ 3.58
HMGCS2P54868 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
HMGCS2P54868 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC37.19■■■■□ 3.54
HMGCS2P54868 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC37.09■■■■□ 3.53
HMGCS2P54868 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
HMGCS2P54868 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
HMGCS2P54868 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
HMGCS2P54868 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC37.03■■■■□ 3.52
HMGCS2P54868 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC36.99■■■■□ 3.51
HMGCS2P54868 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC36.93■■■■□ 3.5
HMGCS2P54868 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
HMGCS2P54868 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC36.8■■■■□ 3.48
HMGCS2P54868 INO80B-203ENST00000409917 796 ntTSL 2 BASIC36.76■■■■□ 3.48
HMGCS2P54868 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
HMGCS2P54868 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC36.42■■■■□ 3.42
HMGCS2P54868 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
HMGCS2P54868 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC36.25■■■■□ 3.39
HMGCS2P54868 AC006077.2-201ENST00000623591 457 ntBASIC36.21■■■■□ 3.39
HMGCS2P54868 ZNRF2P1-201ENST00000441407 443 ntBASIC36.18■■■■□ 3.38
HMGCS2P54868 AC015813.7-201ENST00000623294 581 ntBASIC36.17■■■■□ 3.38
HMGCS2P54868 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC36.1■■■■□ 3.37
HMGCS2P54868 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC36.08■■■■□ 3.37
HMGCS2P54868 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
HMGCS2P54868 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC35.92■■■■□ 3.34
HMGCS2P54868 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC35.86■■■■□ 3.33
HMGCS2P54868 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
HMGCS2P54868 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
HMGCS2P54868 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.78■■■■□ 3.32
HMGCS2P54868 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC35.77■■■■□ 3.32
HMGCS2P54868 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
HMGCS2P54868 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
HMGCS2P54868 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC35.59■■■■□ 3.29
HMGCS2P54868 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC35.52■■■■□ 3.28
HMGCS2P54868 AP002365.1-201ENST00000603448 772 ntBASIC35.31■■■■□ 3.24
HMGCS2P54868 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
HMGCS2P54868 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC35.15■■■■□ 3.22
HMGCS2P54868 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
HMGCS2P54868 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
HMGCS2P54868 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC35.11■■■■□ 3.21
HMGCS2P54868 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
HMGCS2P54868 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC35.1■■■■□ 3.21
HMGCS2P54868 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC35.03■■■■□ 3.2
HMGCS2P54868 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
HMGCS2P54868 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
HMGCS2P54868 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC35■■■■□ 3.19
HMGCS2P54868 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC34.99■■■■□ 3.19
HMGCS2P54868 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
HMGCS2P54868 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.98■■■■□ 3.19
HMGCS2P54868 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC34.95■■■■□ 3.19
HMGCS2P54868 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC34.93■■■■□ 3.18
HMGCS2P54868 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
HMGCS2P54868 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.88■■■■□ 3.17
HMGCS2P54868 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
HMGCS2P54868 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC34.86■■■■□ 3.17
HMGCS2P54868 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
HMGCS2P54868 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC34.84■■■■□ 3.17
HMGCS2P54868 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC34.83■■■■□ 3.17
HMGCS2P54868 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.17
HMGCS2P54868 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.81■■■■□ 3.16
HMGCS2P54868 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC34.79■■■■□ 3.16
HMGCS2P54868 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC34.76■■■■□ 3.16
HMGCS2P54868 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC34.75■■■■□ 3.15
HMGCS2P54868 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC34.72■■■■□ 3.15
HMGCS2P54868 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC34.69■■■■□ 3.14
HMGCS2P54868 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC34.68■■■■□ 3.14
HMGCS2P54868 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC34.68■■■■□ 3.14
HMGCS2P54868 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
HMGCS2P54868 DYNLL1-208ENST00000550178 581 ntBASIC34.65■■■■□ 3.14
HMGCS2P54868 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC34.63■■■■□ 3.13
HMGCS2P54868 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.63■■■■□ 3.13
HMGCS2P54868 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC34.62■■■■□ 3.13
HMGCS2P54868 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
HMGCS2P54868 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
HMGCS2P54868 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
HMGCS2P54868 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC34.54■■■■□ 3.12
HMGCS2P54868 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
HMGCS2P54868 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC34.43■■■■□ 3.1
HMGCS2P54868 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.42■■■■□ 3.1
HMGCS2P54868 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
HMGCS2P54868 AL031258.1-201ENST00000623562 325 ntBASIC34.37■■■■□ 3.09
HMGCS2P54868 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
HMGCS2P54868 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
HMGCS2P54868 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC34.27■■■■□ 3.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms