Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.95■■■□□ 2.86
HMGB1P09429 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.94■■■□□ 2.86
HMGB1P09429 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC32.94■■■□□ 2.86
HMGB1P09429 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.92■■■□□ 2.86
HMGB1P09429 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
HMGB1P09429 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.9■■■□□ 2.86
HMGB1P09429 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
HMGB1P09429 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.9■■■□□ 2.86
HMGB1P09429 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.86■■■□□ 2.85
HMGB1P09429 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.86■■■□□ 2.85
HMGB1P09429 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
HMGB1P09429 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
HMGB1P09429 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.83■■■□□ 2.85
HMGB1P09429 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.83■■■□□ 2.85
HMGB1P09429 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
HMGB1P09429 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.83■■■□□ 2.85
HMGB1P09429 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
HMGB1P09429 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
HMGB1P09429 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.8■■■□□ 2.84
HMGB1P09429 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
HMGB1P09429 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
HMGB1P09429 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
HMGB1P09429 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.78■■■□□ 2.84
HMGB1P09429 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.77■■■□□ 2.84
HMGB1P09429 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.77■■■□□ 2.84
HMGB1P09429 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC32.76■■■□□ 2.83
HMGB1P09429 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
HMGB1P09429 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
HMGB1P09429 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC32.73■■■□□ 2.83
HMGB1P09429 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
HMGB1P09429 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.7■■■□□ 2.83
HMGB1P09429 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.69■■■□□ 2.82
HMGB1P09429 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.68■■■□□ 2.82
HMGB1P09429 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
HMGB1P09429 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.67■■■□□ 2.82
HMGB1P09429 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
HMGB1P09429 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.66■■■□□ 2.82
HMGB1P09429 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
HMGB1P09429 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
HMGB1P09429 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
HMGB1P09429 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
HMGB1P09429 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.62■■■□□ 2.81
HMGB1P09429 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
HMGB1P09429 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
HMGB1P09429 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.61■■■□□ 2.81
HMGB1P09429 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.61■■■□□ 2.81
HMGB1P09429 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.61■■■□□ 2.81
HMGB1P09429 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.61■■■□□ 2.81
HMGB1P09429 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
HMGB1P09429 AC120057.4-201ENST00000624722 1615 ntBASIC32.6■■■□□ 2.81
HMGB1P09429 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
HMGB1P09429 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.8
HMGB1P09429 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.57■■■□□ 2.8
HMGB1P09429 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
HMGB1P09429 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
HMGB1P09429 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
HMGB1P09429 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
HMGB1P09429 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
HMGB1P09429 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
HMGB1P09429 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
HMGB1P09429 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
HMGB1P09429 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
HMGB1P09429 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.49■■■□□ 2.79
HMGB1P09429 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.49■■■□□ 2.79
HMGB1P09429 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC32.49■■■□□ 2.79
HMGB1P09429 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC32.48■■■□□ 2.79
HMGB1P09429 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.47■■■□□ 2.79
HMGB1P09429 ST7-205ENST00000393446 2114 ntTSL 5 BASIC32.47■■■□□ 2.79
HMGB1P09429 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
HMGB1P09429 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
HMGB1P09429 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
HMGB1P09429 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
HMGB1P09429 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC32.43■■■□□ 2.78
HMGB1P09429 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.41■■■□□ 2.78
HMGB1P09429 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.39■■■□□ 2.78
HMGB1P09429 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
HMGB1P09429 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
HMGB1P09429 ST7-202ENST00000323984 2142 ntTSL 5 BASIC32.38■■■□□ 2.77
HMGB1P09429 ST7-207ENST00000393449 2127 ntTSL 5 BASIC32.38■■■□□ 2.77
HMGB1P09429 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
HMGB1P09429 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
HMGB1P09429 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
HMGB1P09429 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.33■■■□□ 2.77
HMGB1P09429 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC32.3■■■□□ 2.76
HMGB1P09429 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
HMGB1P09429 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
HMGB1P09429 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC32.28■■■□□ 2.76
HMGB1P09429 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
HMGB1P09429 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
HMGB1P09429 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.23■■■□□ 2.75
HMGB1P09429 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.23■■■□□ 2.75
HMGB1P09429 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.22■■■□□ 2.75
HMGB1P09429 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
HMGB1P09429 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
HMGB1P09429 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
HMGB1P09429 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
HMGB1P09429 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
HMGB1P09429 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
HMGB1P09429 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
HMGB1P09429 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms