Protein–RNA interactions for Protein: A0A1B0GX49

TRBV6-4, T-cell receptor beta variable 6-4 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV6-4A0A1B0GX49 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TRBV6-4A0A1B0GX49 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
TRBV6-4A0A1B0GX49 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
TRBV6-4A0A1B0GX49 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRBV6-4A0A1B0GX49 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRBV6-4A0A1B0GX49 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRBV6-4A0A1B0GX49 EBPL-203ENST00000378270 579 ntTSL 2 BASIC19.57■□□□□ 0.72
TRBV6-4A0A1B0GX49 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC19.56■□□□□ 0.72
TRBV6-4A0A1B0GX49 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRBV6-4A0A1B0GX49 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRBV6-4A0A1B0GX49 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC19.56■□□□□ 0.72
TRBV6-4A0A1B0GX49 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.55■□□□□ 0.72
TRBV6-4A0A1B0GX49 AP002365.1-201ENST00000603448 772 ntBASIC19.55■□□□□ 0.72
TRBV6-4A0A1B0GX49 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TRBV6-4A0A1B0GX49 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRBV6-4A0A1B0GX49 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRBV6-4A0A1B0GX49 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRBV6-4A0A1B0GX49 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC19.51■□□□□ 0.71
TRBV6-4A0A1B0GX49 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRBV6-4A0A1B0GX49 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.5■□□□□ 0.71
TRBV6-4A0A1B0GX49 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRBV6-4A0A1B0GX49 AL031258.1-201ENST00000623562 325 ntBASIC19.49■□□□□ 0.71
TRBV6-4A0A1B0GX49 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRBV6-4A0A1B0GX49 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 ST7-205ENST00000393446 2114 ntTSL 5 BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TRBV6-4A0A1B0GX49 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
TRBV6-4A0A1B0GX49 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.47■□□□□ 0.71
TRBV6-4A0A1B0GX49 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRBV6-4A0A1B0GX49 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 ST7-202ENST00000323984 2142 ntTSL 5 BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 ST7-207ENST00000393449 2127 ntTSL 5 BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRBV6-4A0A1B0GX49 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRBV6-4A0A1B0GX49 AC120057.4-201ENST00000624722 1615 ntBASIC19.43■□□□□ 0.7
TRBV6-4A0A1B0GX49 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TRBV6-4A0A1B0GX49 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC19.42■□□□□ 0.7
TRBV6-4A0A1B0GX49 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRBV6-4A0A1B0GX49 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRBV6-4A0A1B0GX49 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC19.41■□□□□ 0.7
TRBV6-4A0A1B0GX49 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.4■□□□□ 0.7
TRBV6-4A0A1B0GX49 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC19.4■□□□□ 0.7
TRBV6-4A0A1B0GX49 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TRBV6-4A0A1B0GX49 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.38■□□□□ 0.69
TRBV6-4A0A1B0GX49 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.38■□□□□ 0.69
TRBV6-4A0A1B0GX49 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRBV6-4A0A1B0GX49 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRBV6-4A0A1B0GX49 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRBV6-4A0A1B0GX49 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRBV6-4A0A1B0GX49 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TRBV6-4A0A1B0GX49 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRBV6-4A0A1B0GX49 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRBV6-4A0A1B0GX49 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRBV6-4A0A1B0GX49 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC19.33■□□□□ 0.69
TRBV6-4A0A1B0GX49 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRBV6-4A0A1B0GX49 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.33■□□□□ 0.68
TRBV6-4A0A1B0GX49 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRBV6-4A0A1B0GX49 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.31■□□□□ 0.68
TRBV6-4A0A1B0GX49 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TRBV6-4A0A1B0GX49 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRBV6-4A0A1B0GX49 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV6-4A0A1B0GX49 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV6-4A0A1B0GX49 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV6-4A0A1B0GX49 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV6-4A0A1B0GX49 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRBV6-4A0A1B0GX49 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRBV6-4A0A1B0GX49 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRBV6-4A0A1B0GX49 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRBV6-4A0A1B0GX49 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRBV6-4A0A1B0GX49 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRBV6-4A0A1B0GX49 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRBV6-4A0A1B0GX49 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRBV6-4A0A1B0GX49 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV6-4A0A1B0GX49 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.24■□□□□ 0.67
TRBV6-4A0A1B0GX49 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV6-4A0A1B0GX49 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.23■□□□□ 0.67
TRBV6-4A0A1B0GX49 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.23■□□□□ 0.67
TRBV6-4A0A1B0GX49 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV6-4A0A1B0GX49 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV6-4A0A1B0GX49 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV6-4A0A1B0GX49 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV6-4A0A1B0GX49 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.19■□□□□ 0.66
TRBV6-4A0A1B0GX49 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms