Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.17■■■□□ 2.42
SMIM28A0A1B0GU29 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.17■■■□□ 2.42
SMIM28A0A1B0GU29 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
SMIM28A0A1B0GU29 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
SMIM28A0A1B0GU29 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SMIM28A0A1B0GU29 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMIM28A0A1B0GU29 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
SMIM28A0A1B0GU29 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SMIM28A0A1B0GU29 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.11■■■□□ 2.41
SMIM28A0A1B0GU29 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.11■■■□□ 2.41
SMIM28A0A1B0GU29 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.1■■■□□ 2.41
SMIM28A0A1B0GU29 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.1■■■□□ 2.41
SMIM28A0A1B0GU29 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.1■■■□□ 2.41
SMIM28A0A1B0GU29 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SMIM28A0A1B0GU29 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
SMIM28A0A1B0GU29 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.07■■■□□ 2.4
SMIM28A0A1B0GU29 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMIM28A0A1B0GU29 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SMIM28A0A1B0GU29 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SMIM28A0A1B0GU29 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.05■■■□□ 2.4
SMIM28A0A1B0GU29 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.05■■■□□ 2.4
SMIM28A0A1B0GU29 AL133380.1-201ENST00000506013 324 ntBASIC30.04■■■□□ 2.4
SMIM28A0A1B0GU29 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
SMIM28A0A1B0GU29 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SMIM28A0A1B0GU29 SUZ12P1-203ENST00000578195 985 ntBASIC29.99■■■□□ 2.39
SMIM28A0A1B0GU29 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SMIM28A0A1B0GU29 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.98■■■□□ 2.39
SMIM28A0A1B0GU29 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SMIM28A0A1B0GU29 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.96■■■□□ 2.39
SMIM28A0A1B0GU29 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.96■■■□□ 2.39
SMIM28A0A1B0GU29 CAHM-201ENST00000604200 896 ntBASIC29.95■■■□□ 2.39
SMIM28A0A1B0GU29 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
SMIM28A0A1B0GU29 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SMIM28A0A1B0GU29 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.92■■■□□ 2.38
SMIM28A0A1B0GU29 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.91■■■□□ 2.38
SMIM28A0A1B0GU29 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SMIM28A0A1B0GU29 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SMIM28A0A1B0GU29 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SMIM28A0A1B0GU29 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SMIM28A0A1B0GU29 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.89■■■□□ 2.38
SMIM28A0A1B0GU29 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMIM28A0A1B0GU29 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SMIM28A0A1B0GU29 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SMIM28A0A1B0GU29 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SMIM28A0A1B0GU29 AL391121.1-201ENST00000607967 1349 ntBASIC29.85■■■□□ 2.37
SMIM28A0A1B0GU29 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SMIM28A0A1B0GU29 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMIM28A0A1B0GU29 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMIM28A0A1B0GU29 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SMIM28A0A1B0GU29 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.81■■■□□ 2.36
SMIM28A0A1B0GU29 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC29.81■■■□□ 2.36
SMIM28A0A1B0GU29 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
SMIM28A0A1B0GU29 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SMIM28A0A1B0GU29 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SMIM28A0A1B0GU29 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.77■■■□□ 2.36
SMIM28A0A1B0GU29 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SMIM28A0A1B0GU29 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SMIM28A0A1B0GU29 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SMIM28A0A1B0GU29 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SMIM28A0A1B0GU29 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
SMIM28A0A1B0GU29 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SMIM28A0A1B0GU29 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC29.73■■■□□ 2.35
SMIM28A0A1B0GU29 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC29.71■■■□□ 2.35
SMIM28A0A1B0GU29 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
SMIM28A0A1B0GU29 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
SMIM28A0A1B0GU29 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC29.7■■■□□ 2.34
SMIM28A0A1B0GU29 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SMIM28A0A1B0GU29 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
SMIM28A0A1B0GU29 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.67■■■□□ 2.34
SMIM28A0A1B0GU29 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SMIM28A0A1B0GU29 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SMIM28A0A1B0GU29 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SMIM28A0A1B0GU29 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SMIM28A0A1B0GU29 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC29.64■■■□□ 2.34
SMIM28A0A1B0GU29 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
SMIM28A0A1B0GU29 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SMIM28A0A1B0GU29 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.62■■■□□ 2.33
SMIM28A0A1B0GU29 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SMIM28A0A1B0GU29 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.61■■■□□ 2.33
SMIM28A0A1B0GU29 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
SMIM28A0A1B0GU29 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SMIM28A0A1B0GU29 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SMIM28A0A1B0GU29 WASH5P-204ENST00000632292 975 ntBASIC29.57■■■□□ 2.32
SMIM28A0A1B0GU29 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
SMIM28A0A1B0GU29 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SMIM28A0A1B0GU29 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.54■■■□□ 2.32
SMIM28A0A1B0GU29 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SMIM28A0A1B0GU29 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SMIM28A0A1B0GU29 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SMIM28A0A1B0GU29 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
SMIM28A0A1B0GU29 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SMIM28A0A1B0GU29 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
SMIM28A0A1B0GU29 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.51■■■□□ 2.31
SMIM28A0A1B0GU29 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SMIM28A0A1B0GU29 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.51■■■□□ 2.31
SMIM28A0A1B0GU29 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.5■■■□□ 2.31
SMIM28A0A1B0GU29 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SMIM28A0A1B0GU29 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
SMIM28A0A1B0GU29 RPS2P35-201ENST00000443417 897 ntBASIC29.5■■■□□ 2.31
SMIM28A0A1B0GU29 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms