Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ABCD3P28288 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.74■□□□□ 0.91
ABCD3P28288 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ABCD3P28288 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.74■□□□□ 0.91
ABCD3P28288 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCD3P28288 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCD3P28288 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
ABCD3P28288 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ABCD3P28288 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.74■□□□□ 0.91
ABCD3P28288 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ABCD3P28288 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.74■□□□□ 0.91
ABCD3P28288 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ABCD3P28288 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.74■□□□□ 0.91
ABCD3P28288 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.73■□□□□ 0.91
ABCD3P28288 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCD3P28288 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCD3P28288 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCD3P28288 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
ABCD3P28288 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.73■□□□□ 0.91
ABCD3P28288 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.73■□□□□ 0.91
ABCD3P28288 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCD3P28288 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCD3P28288 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCD3P28288 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.73■□□□□ 0.91
ABCD3P28288 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.73■□□□□ 0.91
ABCD3P28288 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.72■□□□□ 0.91
ABCD3P28288 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ABCD3P28288 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
ABCD3P28288 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
ABCD3P28288 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.72■□□□□ 0.91
ABCD3P28288 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.72■□□□□ 0.91
ABCD3P28288 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.72■□□□□ 0.91
ABCD3P28288 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
ABCD3P28288 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ABCD3P28288 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ABCD3P28288 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ABCD3P28288 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ABCD3P28288 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ABCD3P28288 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ABCD3P28288 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.71■□□□□ 0.91
ABCD3P28288 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
ABCD3P28288 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ABCD3P28288 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
ABCD3P28288 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCD3P28288 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ABCD3P28288 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCD3P28288 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ABCD3P28288 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.7■□□□□ 0.9
ABCD3P28288 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 AC079630.1-202ENST00000618127 1840 ntBASIC20.69■□□□□ 0.9
ABCD3P28288 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.69■□□□□ 0.9
ABCD3P28288 AC144652.1-201ENST00000609974 1624 ntBASIC20.69■□□□□ 0.9
ABCD3P28288 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.69■□□□□ 0.9
ABCD3P28288 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
ABCD3P28288 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.69■□□□□ 0.9
ABCD3P28288 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.69■□□□□ 0.9
ABCD3P28288 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.69■□□□□ 0.9
ABCD3P28288 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.69■□□□□ 0.9
ABCD3P28288 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ABCD3P28288 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
ABCD3P28288 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCD3P28288 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.68■□□□□ 0.9
ABCD3P28288 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.68■□□□□ 0.9
ABCD3P28288 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.68■□□□□ 0.9
ABCD3P28288 ANOS2P-203ENST00000472227 1816 ntBASIC20.68■□□□□ 0.9
ABCD3P28288 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.68■□□□□ 0.9
ABCD3P28288 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCD3P28288 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ABCD3P28288 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ABCD3P28288 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
ABCD3P28288 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCD3P28288 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCD3P28288 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCD3P28288 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ABCD3P28288 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCD3P28288 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.67■□□□□ 0.9
ABCD3P28288 AC241377.3-202ENST00000626088 1088 ntBASIC20.67■□□□□ 0.9
ABCD3P28288 AC241585.3-202ENST00000628937 1088 ntBASIC20.67■□□□□ 0.9
ABCD3P28288 AC245100.8-202ENST00000629247 1058 ntBASIC20.67■□□□□ 0.9
ABCD3P28288 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ABCD3P28288 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.67■□□□□ 0.9
ABCD3P28288 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCD3P28288 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
ABCD3P28288 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ABCD3P28288 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ABCD3P28288 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.66■□□□□ 0.9
ABCD3P28288 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ABCD3P28288 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ABCD3P28288 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.66■□□□□ 0.9
ABCD3P28288 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ABCD3P28288 AC099791.2-201ENST00000605725 427 ntBASIC20.66■□□□□ 0.9
ABCD3P28288 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ABCD3P28288 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.66■□□□□ 0.9
ABCD3P28288 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms