Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 AC015911.4-201ENST00000588022 1070 ntBASIC12.98□□□□□ -0.33
SCN1BQ07699 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.98□□□□□ -0.33
SCN1BQ07699 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.98□□□□□ -0.33
SCN1BQ07699 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.97□□□□□ -0.33
SCN1BQ07699 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 AC135782.3-201ENST00000562782 2105 ntBASIC12.97□□□□□ -0.33
SCN1BQ07699 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 CICP1-201ENST00000416803 2410 ntBASIC12.97□□□□□ -0.33
SCN1BQ07699 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.97□□□□□ -0.33
SCN1BQ07699 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.97□□□□□ -0.33
SCN1BQ07699 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.97□□□□□ -0.33
SCN1BQ07699 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.97□□□□□ -0.33
SCN1BQ07699 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.97□□□□□ -0.33
SCN1BQ07699 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.97□□□□□ -0.33
SCN1BQ07699 AC135586.1-201ENST00000539323 574 ntBASIC12.97□□□□□ -0.33
SCN1BQ07699 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.97□□□□□ -0.33
SCN1BQ07699 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.97□□□□□ -0.33
SCN1BQ07699 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.97□□□□□ -0.33
SCN1BQ07699 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.97□□□□□ -0.33
SCN1BQ07699 AC093512.1-201ENST00000617969 520 ntBASIC12.97□□□□□ -0.33
SCN1BQ07699 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
SCN1BQ07699 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
SCN1BQ07699 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
SCN1BQ07699 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SCN1BQ07699 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
SCN1BQ07699 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC12.96□□□□□ -0.33
SCN1BQ07699 AC011498.7-201ENST00000624986 2027 ntBASIC12.96□□□□□ -0.33
SCN1BQ07699 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.96□□□□□ -0.33
SCN1BQ07699 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
SCN1BQ07699 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
SCN1BQ07699 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SCN1BQ07699 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms