RNA–Protein interactions for RNA: ENST00000295226.1

CCDC140-201, Transcript of coiled-coil domain containing 140, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC140, Length 1,699 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140-201ENST00000295226 NISCHQ9Y2I1 1504 aa35.58■■■■□ 3.29
CCDC140-201ENST00000295226 CCDC180Q9P1Z9 1646 aa31.25■■■□□ 2.59
CCDC140-201ENST00000295226 ABCC9O60706 1549 aa30.25■■■□□ 2.43
CCDC140-201ENST00000295226 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
CCDC140-201ENST00000295226 DCAF8L2P0C7V8 631 aa29.74■■■□□ 2.35
CCDC140-201ENST00000295226 DCAF1Q9Y4B6 1507 aa29.34■■■□□ 2.29
CCDC140-201ENST00000295226 NACADO15069 1562 aa29.28■■■□□ 2.28
CCDC140-201ENST00000295226 MYO15BQ96JP2 1530 aa29.22■■■□□ 2.27
CCDC140-201ENST00000295226 RB1CC1Q8TDY2 1594 aa29.19■■■□□ 2.26
CCDC140-201ENST00000295226 SCRIBQ14160 1630 aa28.75■■■□□ 2.19
CCDC140-201ENST00000295226 SHROOM4Q9ULL8 1493 aa28.71■■■□□ 2.19
CCDC140-201ENST00000295226 UNC13AQ9UPW8 1703 aa28.62■■■□□ 2.17
CCDC140-201ENST00000295226 PABPN1Q86U42 306 aaKnown RBP eCLIP28.46■■■□□ 2.15
CCDC140-201ENST00000295226 BICRAQ9NZM4 1560 aa28.36■■■□□ 2.13
CCDC140-201ENST00000295226 CECR2Q9BXF3 1484 aa27.76■■■□□ 2.03
CCDC140-201ENST00000295226 EIF4G1Q04637 1599 aaKnown RBP27.54■■■□□ 2
CCDC140-201ENST00000295226 MROH2BQ7Z745 1585 aa27.51■■□□□ 1.99
CCDC140-201ENST00000295226 BAZ1AQ9NRL2 1556 aaPredicted RBP27.5■■□□□ 1.99
CCDC140-201ENST00000295226 SMARCA4P51532 1647 aa27.48■■□□□ 1.99
CCDC140-201ENST00000295226 RSF1Q96T23 1441 aaPredicted RBP27.39■■□□□ 1.97
CCDC140-201ENST00000295226 DNAJC5BQ9UF47 199 aa27.33■■□□□ 1.97
CCDC140-201ENST00000295226 CC2D2AQ9P2K1 1620 aa27.32■■□□□ 1.96
CCDC140-201ENST00000295226 SUPT5HO00267 1087 aaKnown RBP27.31■■□□□ 1.96
CCDC140-201ENST00000295226 WIZO95785 1651 aa27.25■■□□□ 1.95
CCDC140-201ENST00000295226 ATAD2BQ9ULI0 1458 aa27.2■■□□□ 1.94
CCDC140-201ENST00000295226 SMARCA2P51531 1590 aa27.13■■□□□ 1.93
CCDC140-201ENST00000295226 PEG3Q9GZU2 1588 aa27.12■■□□□ 1.93
CCDC140-201ENST00000295226 NCAPD3P42695 1498 aa27.05■■□□□ 1.92
CCDC140-201ENST00000295226 BAZ1BQ9UIG0 1483 aaKnown RBP27■■□□□ 1.91
CCDC140-201ENST00000295226 HMGXB3Q12766 1538 aa26.93■■□□□ 1.9
CCDC140-201ENST00000295226 TOP2AP11388 1531 aaKnown RBP26.89■■□□□ 1.9
CCDC140-201ENST00000295226 CCDC88BA6NC98 1476 aa26.66■■□□□ 1.86
CCDC140-201ENST00000295226 NESP48681 1621 aa26.37■■□□□ 1.81
CCDC140-201ENST00000295226 CADPSQ9ULU8 1353 aa26.34■■□□□ 1.81
CCDC140-201ENST00000295226 CFTRP13569 1480 aa26.28■■□□□ 1.8
CCDC140-201ENST00000295226 LAMC3Q9Y6N6 1575 aa26.21■■□□□ 1.79
CCDC140-201ENST00000295226 PRDM2Q13029 1718 aa26.06■■□□□ 1.76
CCDC140-201ENST00000295226 PDS5BQ9NTI5 1447 aa26.06■■□□□ 1.76
CCDC140-201ENST00000295226 FANCD2Q9BXW9 1451 aa26.05■■□□□ 1.76
CCDC140-201ENST00000295226 KIF21AQ7Z4S6 1674 aa25.99■■□□□ 1.75
CCDC140-201ENST00000295226 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
CCDC140-201ENST00000295226 CEP164Q9UPV0 1460 aa25.93■■□□□ 1.74
CCDC140-201ENST00000295226 ABCC8Q09428 1581 aa25.92■■□□□ 1.74
CCDC140-201ENST00000295226 WRNQ14191 1432 aaPredicted RBP eCLIP25.79■■□□□ 1.72
CCDC140-201ENST00000295226 URB2Q14146 1524 aaKnown RBP25.77■■□□□ 1.72
CCDC140-201ENST00000295226 CHIC1Q5VXU3 224 aa25.77■■□□□ 1.72
CCDC140-201ENST00000295226 MRC2Q9UBG0 1479 aa25.76■■□□□ 1.71
CCDC140-201ENST00000295226 CUX1P39880 1505 aa25.75■■□□□ 1.71
CCDC140-201ENST00000295226 SYNJ1O43426 1573 aa25.71■■□□□ 1.71
CCDC140-201ENST00000295226 THOC2Q8NI27 1593 aaKnown RBP25.71■■□□□ 1.71
CCDC140-201ENST00000295226 TOPBP1Q92547 1522 aa25.7■■□□□ 1.7
CCDC140-201ENST00000295226 TRIM41Q8WV44 630 aa25.68■■□□□ 1.7
CCDC140-201ENST00000295226 DNMBPQ6XZF7 1577 aa25.67■■□□□ 1.7
CCDC140-201ENST00000295226 WDR62O43379 1518 aa25.63■■□□□ 1.69
CCDC140-201ENST00000295226 TOP2BQ02880 1626 aa25.62■■□□□ 1.69
CCDC140-201ENST00000295226 BIVM-ERCC5R4GMW8 1640 aa25.59■■□□□ 1.69
CCDC140-201ENST00000295226 FGD5Q6ZNL6 1462 aa25.56■■□□□ 1.68
CCDC140-201ENST00000295226 POLA1P09884 1462 aaPredicted RBP25.52■■□□□ 1.68
CCDC140-201ENST00000295226 RAD54L2Q9Y4B4 1467 aa25.48■■□□□ 1.67
CCDC140-201ENST00000295226 CUX2O14529 1486 aa25.46■■□□□ 1.67
CCDC140-201ENST00000295226 SOGA1O94964 1423 aa25.46■■□□□ 1.67
CCDC140-201ENST00000295226 TARBP1Q13395 1621 aaKnown RBP25.35■■□□□ 1.65
CCDC140-201ENST00000295226 IFT140Q96RY7 1462 aa25.34■■□□□ 1.65
CCDC140-201ENST00000295226 TDRD9Q8NDG6 1382 aaKnown RBP25.3■■□□□ 1.64
CCDC140-201ENST00000295226 ZNF608Q9ULD9 1512 aaPredicted RBP25.29■■□□□ 1.64
CCDC140-201ENST00000295226 ABCA10Q8WWZ4 1543 aa25.28■■□□□ 1.64
CCDC140-201ENST00000295226 RUSC2Q8N2Y8 1516 aa25.28■■□□□ 1.64
CCDC140-201ENST00000295226 FAM9AQ8IZU1 332 aaPredicted RBP25.26■■□□□ 1.63
CCDC140-201ENST00000295226 WDR97A6NE52 1622 aa25.25■■□□□ 1.63
CCDC140-201ENST00000295226 AQRO60306 1485 aaKnown RBP eCLIP25.24■■□□□ 1.63
CCDC140-201ENST00000295226 KIF27Q86VH2 1401 aa25.18■■□□□ 1.62
CCDC140-201ENST00000295226 GAPVD1Q14C86 1478 aa25.15■■□□□ 1.62
CCDC140-201ENST00000295226 EIF4G3O43432 1585 aaKnown RBP25.14■■□□□ 1.61
CCDC140-201ENST00000295226 ABCA5Q8WWZ7 1642 aa25.13■■□□□ 1.61
CCDC140-201ENST00000295226 IGF1RP08069 1367 aa25.06■■□□□ 1.6
CCDC140-201ENST00000295226 CSRNP3Q8WYN3 585 aa25.04■■□□□ 1.6
CCDC140-201ENST00000295226 GRIN2BQ13224 1484 aa25.03■■□□□ 1.6
CCDC140-201ENST00000295226 PBRM1Q86U86 1689 aa25.03■■□□□ 1.6
CCDC140-201ENST00000295226 EEA1Q15075 1411 aa25.02■■□□□ 1.6
CCDC140-201ENST00000295226 EHMT2Q96KQ7 1210 aa24.99■■□□□ 1.59
CCDC140-201ENST00000295226 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
CCDC140-201ENST00000295226 SNAPC4Q5SXM2 1469 aa24.96■■□□□ 1.59
CCDC140-201ENST00000295226 CARMIL1Q5VZK9 1371 aa24.92■■□□□ 1.58
CCDC140-201ENST00000295226 FBLN2P98095 1184 aa24.88■■□□□ 1.57
CCDC140-201ENST00000295226 MAGI1Q96QZ7 1491 aaPredicted RBP24.87■■□□□ 1.57
CCDC140-201ENST00000295226 ADAMTS12P58397 1594 aa24.85■■□□□ 1.57
CCDC140-201ENST00000295226 FHAD1B1AJZ9 1412 aa24.85■■□□□ 1.57
CCDC140-201ENST00000295226 PRXQ9BXM0 1461 aa24.85■■□□□ 1.57
CCDC140-201ENST00000295226 CUL7Q14999 1698 aa24.84■■□□□ 1.57
CCDC140-201ENST00000295226 LOC105371045A0A1W2PR82 267 aa24.84■■□□□ 1.57
CCDC140-201ENST00000295226 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
CCDC140-201ENST00000295226 RAPGEF2Q9Y4G8 1499 aa24.8■■□□□ 1.56
CCDC140-201ENST00000295226 SYNJ2O15056 1496 aa24.79■■□□□ 1.56
CCDC140-201ENST00000295226 KIF21BO75037 1637 aa24.74■■□□□ 1.55
CCDC140-201ENST00000295226 CHD1O14646 1710 aa24.73■■□□□ 1.55
CCDC140-201ENST00000295226 GRIN2AQ12879 1464 aa24.72■■□□□ 1.55
CCDC140-201ENST00000295226 UBTFP17480 764 aaKnown RBP24.7■■□□□ 1.54
CCDC140-201ENST00000295226 GOLGA3Q08378 1498 aa24.69■■□□□ 1.54
CCDC140-201ENST00000295226 CEP170Q5SW79 1584 aa24.61■■□□□ 1.53
CCDC140-201ENST00000295226 RANGAP1P46060 587 aaPredicted RBP24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms