RNA–Protein interactions for RNA: ENST00000366897.5

PRKN-205, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 2,877 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-205ENST00000366897 NISCHQ9Y2I1 1504 aa27.17■■□□□ 1.94
PRKN-205ENST00000366897 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
PRKN-205ENST00000366897 ABCC9O60706 1549 aa23.77■■□□□ 1.4
PRKN-205ENST00000366897 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
PRKN-205ENST00000366897 SUPT5HO00267 1087 aaKnown RBP23.38■■□□□ 1.33
PRKN-205ENST00000366897 DCAF8L2P0C7V8 631 aa22.85■■□□□ 1.25
PRKN-205ENST00000366897 MYO15BQ96JP2 1530 aa22.78■■□□□ 1.24
PRKN-205ENST00000366897 RB1CC1Q8TDY2 1594 aa22.75■■□□□ 1.23
PRKN-205ENST00000366897 HRCP23327 699 aa22.73■■□□□ 1.23
PRKN-205ENST00000366897 NACADO15069 1562 aa22.71■■□□□ 1.23
PRKN-205ENST00000366897 CHIC1Q5VXU3 224 aa22.71■■□□□ 1.23
PRKN-205ENST00000366897 PCGF6Q9BYE7 350 aa22.64■■□□□ 1.21
PRKN-205ENST00000366897 ZCCHC6Q5VYS8 1495 aaKnown RBP22.62■■□□□ 1.21
PRKN-205ENST00000366897 PPARGC1BQ86YN6 1023 aaKnown RBP22.52■■□□□ 1.19
PRKN-205ENST00000366897 DCAF1Q9Y4B6 1507 aa22.42■■□□□ 1.18
PRKN-205ENST00000366897 LOC105371045A0A1W2PR82 267 aa22.29■■□□□ 1.16
PRKN-205ENST00000366897 PABPN1Q86U42 306 aaKnown RBP eCLIP22.25■■□□□ 1.15
PRKN-205ENST00000366897 UNC13AQ9UPW8 1703 aa22.24■■□□□ 1.15
PRKN-205ENST00000366897 BICRAQ9NZM4 1560 aa22.1■■□□□ 1.13
PRKN-205ENST00000366897 SCRIBQ14160 1630 aa22.07■■□□□ 1.12
PRKN-205ENST00000366897 DNAJC5BQ9UF47 199 aa21.94■■□□□ 1.1
PRKN-205ENST00000366897 TRIM26Q12899 539 aaPredicted RBP21.85■■□□□ 1.09
PRKN-205ENST00000366897 EHMT2Q96KQ7 1210 aa21.71■■□□□ 1.07
PRKN-205ENST00000366897 FAM9AQ8IZU1 332 aaPredicted RBP21.69■■□□□ 1.06
PRKN-205ENST00000366897 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
PRKN-205ENST00000366897 EIF4G1Q04637 1599 aaKnown RBP21.53■■□□□ 1.04
PRKN-205ENST00000366897 CC2D2AQ9P2K1 1620 aa21.46■■□□□ 1.03
PRKN-205ENST00000366897 RSF1Q96T23 1441 aaPredicted RBP21.41■■□□□ 1.02
PRKN-205ENST00000366897 ZEB1P37275 1124 aaPredicted RBP21.4■■□□□ 1.02
PRKN-205ENST00000366897 SCAF1Q9H7N4 1312 aaKnown RBP21.35■■□□□ 1.01
PRKN-205ENST00000366897 CECR2Q9BXF3 1484 aa21.34■■□□□ 1.01
PRKN-205ENST00000366897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.15■□□□□ 0.98
PRKN-205ENST00000366897 TTBK1Q5TCY1 1321 aaPredicted RBP21.08■□□□□ 0.97
PRKN-205ENST00000366897 SMARCA4P51532 1647 aa21.08■□□□□ 0.96
PRKN-205ENST00000366897 PELP1Q8IZL8 1130 aaKnown RBP21.05■□□□□ 0.96
PRKN-205ENST00000366897 BAZ1AQ9NRL2 1556 aaPredicted RBP21.04■□□□□ 0.96
PRKN-205ENST00000366897 CCER1Q8TC90 406 aaPredicted RBP21.03■□□□□ 0.96
PRKN-205ENST00000366897 ATAD2BQ9ULI0 1458 aa21.01■□□□□ 0.95
PRKN-205ENST00000366897 NCAPD3P42695 1498 aa20.99■□□□□ 0.95
PRKN-205ENST00000366897 MROH2BQ7Z745 1585 aa20.96■□□□□ 0.95
PRKN-205ENST00000366897 NEUROD1Q13562 356 aa20.95■□□□□ 0.94
PRKN-205ENST00000366897 SMARCA2P51531 1590 aa20.94■□□□□ 0.94
PRKN-205ENST00000366897 ACIN1Q9UKV3 1341 aaKnown RBP20.88■□□□□ 0.93
PRKN-205ENST00000366897 PEG3Q9GZU2 1588 aa20.85■□□□□ 0.93
PRKN-205ENST00000366897 HMGXB3Q12766 1538 aa20.85■□□□□ 0.93
PRKN-205ENST00000366897 BAZ1BQ9UIG0 1483 aaKnown RBP20.82■□□□□ 0.92
PRKN-205ENST00000366897 WIZO95785 1651 aa20.82■□□□□ 0.92
PRKN-205ENST00000366897 DIEXFQ68CQ4 756 aaKnown RBP20.8■□□□□ 0.92
PRKN-205ENST00000366897 GTF3C3Q9Y5Q9 886 aa20.78■□□□□ 0.92
PRKN-205ENST00000366897 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
PRKN-205ENST00000366897 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
PRKN-205ENST00000366897 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
PRKN-205ENST00000366897 YTHDC1Q96MU7 727 aaKnown RBP20.6■□□□□ 0.89
PRKN-205ENST00000366897 CEP162Q5TB80 1403 aa20.57■□□□□ 0.88
PRKN-205ENST00000366897 NESP48681 1621 aa20.56■□□□□ 0.88
PRKN-205ENST00000366897 SOGA1O94964 1423 aa20.54■□□□□ 0.88
PRKN-205ENST00000366897 UBTFP17480 764 aaKnown RBP20.54■□□□□ 0.88
PRKN-205ENST00000366897 ERCC6Q03468 1493 aa20.47■□□□□ 0.87
PRKN-205ENST00000366897 TOP2AP11388 1531 aaKnown RBP20.46■□□□□ 0.87
PRKN-205ENST00000366897 ZNF316A6NFI3 1004 aaPredicted RBP20.46■□□□□ 0.87
PRKN-205ENST00000366897 RUSC2Q8N2Y8 1516 aa20.46■□□□□ 0.87
PRKN-205ENST00000366897 WRNQ14191 1432 aaPredicted RBP eCLIP20.45■□□□□ 0.87
PRKN-205ENST00000366897 HNRNPUL2Q1KMD3 747 aaKnown RBP20.44■□□□□ 0.86
PRKN-205ENST00000366897 LAMC3Q9Y6N6 1575 aa20.42■□□□□ 0.86
PRKN-205ENST00000366897 CSRNP3Q8WYN3 585 aa20.41■□□□□ 0.86
PRKN-205ENST00000366897 CADPSQ9ULU8 1353 aa20.4■□□□□ 0.86
PRKN-205ENST00000366897 TNIKQ9UKE5 1360 aa20.38■□□□□ 0.85
PRKN-205ENST00000366897 MIER1Q8N108 512 aa20.37■□□□□ 0.85
PRKN-205ENST00000366897 RANGAP1P46060 587 aaPredicted RBP20.32■□□□□ 0.84
PRKN-205ENST00000366897 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
PRKN-205ENST00000366897 CFTRP13569 1480 aa20.26■□□□□ 0.83
PRKN-205ENST00000366897 KIF21AQ7Z4S6 1674 aa20.25■□□□□ 0.83
PRKN-205ENST00000366897 CUX2O14529 1486 aa20.23■□□□□ 0.83
PRKN-205ENST00000366897 GOLGA3Q08378 1498 aa20.19■□□□□ 0.82
PRKN-205ENST00000366897 THOC2Q8NI27 1593 aaKnown RBP20.19■□□□□ 0.82
PRKN-205ENST00000366897 FANCD2Q9BXW9 1451 aa20.16■□□□□ 0.82
PRKN-205ENST00000366897 EEA1Q15075 1411 aa20.14■□□□□ 0.81
PRKN-205ENST00000366897 CEP164Q9UPV0 1460 aa20.12■□□□□ 0.81
PRKN-205ENST00000366897 MRC2Q9UBG0 1479 aa20.1■□□□□ 0.81
PRKN-205ENST00000366897 CLIP1P30622 1438 aa20.09■□□□□ 0.81
PRKN-205ENST00000366897 APLP2Q06481 763 aa20.08■□□□□ 0.8
PRKN-205ENST00000366897 WDR62O43379 1518 aa20.03■□□□□ 0.8
PRKN-205ENST00000366897 PRDM2Q13029 1718 aa20■□□□□ 0.79
PRKN-205ENST00000366897 MYT1Q01538 1121 aa19.99■□□□□ 0.79
PRKN-205ENST00000366897 SYNJ1O43426 1573 aa19.98■□□□□ 0.79
PRKN-205ENST00000366897 VPS8Q8N3P4 1428 aa19.97■□□□□ 0.79
PRKN-205ENST00000366897 URB2Q14146 1524 aaKnown RBP19.97■□□□□ 0.79
PRKN-205ENST00000366897 RAPGEF2Q9Y4G8 1499 aa19.96■□□□□ 0.79
PRKN-205ENST00000366897 KIF21BO75037 1637 aa19.87■□□□□ 0.77
PRKN-205ENST00000366897 KANK4Q5T7N3 995 aaPredicted RBP19.85■□□□□ 0.77
PRKN-205ENST00000366897 DHX57Q6P158 1386 aaKnown RBP19.83■□□□□ 0.77
PRKN-205ENST00000366897 SUPT16HQ9Y5B9 1047 aaKnown RBP19.83■□□□□ 0.76
PRKN-205ENST00000366897 TOPBP1Q92547 1522 aa19.82■□□□□ 0.76
PRKN-205ENST00000366897 ITGAEP38570 1179 aa19.82■□□□□ 0.76
PRKN-205ENST00000366897 DNAJC5Q9H3Z4 198 aa19.77■□□□□ 0.75
PRKN-205ENST00000366897 DNMBPQ6XZF7 1577 aa19.76■□□□□ 0.75
PRKN-205ENST00000366897 KCNH8Q96L42 1107 aa19.75■□□□□ 0.75
PRKN-205ENST00000366897 IFT140Q96RY7 1462 aa19.69■□□□□ 0.74
PRKN-205ENST00000366897 ZNF608Q9ULD9 1512 aaPredicted RBP19.67■□□□□ 0.74
PRKN-205ENST00000366897 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms