RNA–Protein interactions for RNA: ENST00000609104.5

USP6NL-205, Transcript of USP6 N-terminal like, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP6NL, Length 11,377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-205ENST00000609104 DCAF8L2P0C7V8 631 aa22.24■■□□□ 1.15
USP6NL-205ENST00000609104 SUPT5HO00267 1087 aaKnown RBP21.18■□□□□ 0.98
USP6NL-205ENST00000609104 PELP1Q8IZL8 1130 aaKnown RBP21.03■□□□□ 0.96
USP6NL-205ENST00000609104 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
USP6NL-205ENST00000609104 SHROOM4Q9ULL8 1493 aa20.67■□□□□ 0.9
USP6NL-205ENST00000609104 APLP2Q06481 763 aa20.4■□□□□ 0.86
USP6NL-205ENST00000609104 ERICH6Q7L0X2 663 aa20.36■□□□□ 0.85
USP6NL-205ENST00000609104 TTBK1Q5TCY1 1321 aaPredicted RBP20.28■□□□□ 0.84
USP6NL-205ENST00000609104 PCGF6Q9BYE7 350 aa20.17■□□□□ 0.82
USP6NL-205ENST00000609104 FAM9AQ8IZU1 332 aaPredicted RBP20.11■□□□□ 0.81
USP6NL-205ENST00000609104 CCER1Q8TC90 406 aaPredicted RBP20.11■□□□□ 0.81
USP6NL-205ENST00000609104 CENPBP07199 599 aaPredicted RBP20.08■□□□□ 0.8
USP6NL-205ENST00000609104 NISCHQ9Y2I1 1504 aa20.04■□□□□ 0.8
USP6NL-205ENST00000609104 RANGAP1P46060 587 aaPredicted RBP19.9■□□□□ 0.78
USP6NL-205ENST00000609104 ZEB1P37275 1124 aaPredicted RBP19.8■□□□□ 0.76
USP6NL-205ENST00000609104 ATP1B4Q9UN42 357 aaPredicted RBP19.77■□□□□ 0.76
USP6NL-205ENST00000609104 YTHDC1Q96MU7 727 aaKnown RBP19.75■□□□□ 0.75
USP6NL-205ENST00000609104 NEFLP07196 543 aa19.73■□□□□ 0.75
USP6NL-205ENST00000609104 MYT1Q01538 1121 aa19.68■□□□□ 0.74
USP6NL-205ENST00000609104 TRIM41Q8WV44 630 aa19.51■□□□□ 0.71
USP6NL-205ENST00000609104 UBTFP17480 764 aaKnown RBP19.45■□□□□ 0.7
USP6NL-205ENST00000609104 PPARGC1BQ86YN6 1023 aaKnown RBP19.37■□□□□ 0.69
USP6NL-205ENST00000609104 DAXXQ9UER7 740 aaPredicted RBP19.35■□□□□ 0.69
USP6NL-205ENST00000609104 POLR3GLQ9BT43 218 aa19.18■□□□□ 0.66
USP6NL-205ENST00000609104 TRIM26Q12899 539 aaPredicted RBP19.08■□□□□ 0.65
USP6NL-205ENST00000609104 CNGB1Q14028 1251 aaPredicted RBP19.08■□□□□ 0.64
USP6NL-205ENST00000609104 ITGAEP38570 1179 aa19.06■□□□□ 0.64
USP6NL-205ENST00000609104 HRCP23327 699 aa19.01■□□□□ 0.63
USP6NL-205ENST00000609104 MYT1LQ9UL68 1186 aa19■□□□□ 0.63
USP6NL-205ENST00000609104 ZNF316A6NFI3 1004 aaPredicted RBP18.89■□□□□ 0.61
USP6NL-205ENST00000609104 RTL5Q5HYW3 569 aaPredicted RBP18.87■□□□□ 0.61
USP6NL-205ENST00000609104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.86■□□□□ 0.61
USP6NL-205ENST00000609104 HNRNPUL2Q1KMD3 747 aaKnown RBP18.86■□□□□ 0.61
USP6NL-205ENST00000609104 SLC4A1APQ9BWU0 796 aaKnown RBP18.85■□□□□ 0.61
USP6NL-205ENST00000609104 CLSPNQ9HAW4 1339 aa18.82■□□□□ 0.6
USP6NL-205ENST00000609104 CHIC1Q5VXU3 224 aa18.82■□□□□ 0.6
USP6NL-205ENST00000609104 LOC105371045A0A1W2PR82 267 aa18.75■□□□□ 0.59
USP6NL-205ENST00000609104 DIEXFQ68CQ4 756 aaKnown RBP18.69■□□□□ 0.58
USP6NL-205ENST00000609104 BCANQ96GW7 911 aa18.55■□□□□ 0.56
USP6NL-205ENST00000609104 FAM50AQ14320 339 aaKnown RBP18.45■□□□□ 0.54
USP6NL-205ENST00000609104 GTF3C3Q9Y5Q9 886 aa18.44■□□□□ 0.54
USP6NL-205ENST00000609104 CDK11AQ9UQ88 783 aaPredicted RBP18.44■□□□□ 0.54
USP6NL-205ENST00000609104 NEUROD1Q13562 356 aa18.44■□□□□ 0.54
USP6NL-205ENST00000609104 TRIM52Q96A61 297 aa18.38■□□□□ 0.53
USP6NL-205ENST00000609104 BCL11AQ9H165 835 aa18.38■□□□□ 0.53
USP6NL-205ENST00000609104 ZBTB47Q9UFB7 747 aaPredicted RBP18.35■□□□□ 0.53
USP6NL-205ENST00000609104 ANP32CO43423 234 aa18.31■□□□□ 0.52
USP6NL-205ENST00000609104 SLC24A1O60721 1099 aa18.29■□□□□ 0.52
USP6NL-205ENST00000609104 ZNF326Q5BKZ1 582 aaKnown RBP18.24■□□□□ 0.51
USP6NL-205ENST00000609104 CANXP27824 592 aaKnown RBP18.22■□□□□ 0.51
USP6NL-205ENST00000609104 ANP32AP39687 249 aaKnown RBP18.14■□□□□ 0.49
USP6NL-205ENST00000609104 NPM2Q86SE8 214 aaKnown RBP18.14■□□□□ 0.49
USP6NL-205ENST00000609104 EIF5BO60841 1220 aaKnown RBP18.12■□□□□ 0.49
USP6NL-205ENST00000609104 NEFMP07197 916 aa18.01■□□□□ 0.47
USP6NL-205ENST00000609104 ACIN1Q9UKV3 1341 aaKnown RBP17.99■□□□□ 0.47
USP6NL-205ENST00000609104 ANP32BQ92688 251 aaKnown RBP17.98■□□□□ 0.47
USP6NL-205ENST00000609104 HSP90AA1P07900 732 aaKnown RBP17.93■□□□□ 0.46
USP6NL-205ENST00000609104 FKBP8Q14318 412 aa17.9■□□□□ 0.46
USP6NL-205ENST00000609104 NBR1Q14596 966 aa17.83■□□□□ 0.45
USP6NL-205ENST00000609104 FBLN2P98095 1184 aa17.83■□□□□ 0.44
USP6NL-205ENST00000609104 GLIPR1L2Q4G1C9 344 aa17.82■□□□□ 0.44
USP6NL-205ENST00000609104 UPF2Q9HAU5 1272 aaKnown RBP17.8■□□□□ 0.44
USP6NL-205ENST00000609104 ARXQ96QS3 562 aa17.8■□□□□ 0.44
USP6NL-205ENST00000609104 ARID3CA6NKF2 412 aa17.78■□□□□ 0.44
USP6NL-205ENST00000609104 P3H3Q8IVL6 736 aa17.78■□□□□ 0.44
USP6NL-205ENST00000609104 SALL2Q9Y467 1007 aaPredicted RBP17.76■□□□□ 0.43
USP6NL-205ENST00000609104 HNRNPUQ00839 825 aaKnown RBP eCLIP17.73■□□□□ 0.43
USP6NL-205ENST00000609104 FAM9BQ8IZU0 186 aa17.73■□□□□ 0.43
USP6NL-205ENST00000609104 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
USP6NL-205ENST00000609104 ZNF777Q9ULD5 760 aaPredicted RBP17.71■□□□□ 0.43
USP6NL-205ENST00000609104 DDX10Q13206 875 aaKnown RBP17.64■□□□□ 0.41
USP6NL-205ENST00000609104 CCDC136Q96JN2 1154 aa17.63■□□□□ 0.41
USP6NL-205ENST00000609104 CHGAP10645 457 aaKnown RBP17.6■□□□□ 0.41
USP6NL-205ENST00000609104 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
USP6NL-205ENST00000609104 TMC1Q8TDI8 760 aa17.56■□□□□ 0.4
USP6NL-205ENST00000609104 PLPPR3Q6T4P5 718 aa17.56■□□□□ 0.4
USP6NL-205ENST00000609104 STAG3Q9UJ98 1225 aa17.54■□□□□ 0.4
USP6NL-205ENST00000609104 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.54■□□□□ 0.4
USP6NL-205ENST00000609104 IRX6P78412 446 aaPredicted RBP17.53■□□□□ 0.4
USP6NL-205ENST00000609104 ESF1Q9H501 851 aaKnown RBP17.49■□□□□ 0.39
USP6NL-205ENST00000609104 WDR43Q15061 677 aaKnown RBP eCLIP17.48■□□□□ 0.39
USP6NL-205ENST00000609104 ABCC9O60706 1549 aa17.48■□□□□ 0.39
USP6NL-205ENST00000609104 CSRNP3Q8WYN3 585 aa17.44■□□□□ 0.38
USP6NL-205ENST00000609104 CDK11BP21127 795 aaKnown RBP17.42■□□□□ 0.38
USP6NL-205ENST00000609104 TRIM44Q96DX7 344 aaPredicted RBP17.42■□□□□ 0.38
USP6NL-205ENST00000609104 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.4■□□□□ 0.38
USP6NL-205ENST00000609104 KDM2AQ9Y2K7 1162 aa17.39■□□□□ 0.37
USP6NL-205ENST00000609104 MRS2Q9HD23 443 aa17.39■□□□□ 0.37
USP6NL-205ENST00000609104 SCAF1Q9H7N4 1312 aaKnown RBP17.38■□□□□ 0.37
USP6NL-205ENST00000609104 MYH16Q9H6N6 1097 aa17.37■□□□□ 0.37
USP6NL-205ENST00000609104 CHIC2Q9UKJ5 165 aa17.36■□□□□ 0.37
USP6NL-205ENST00000609104 HIRIP3Q9BW71 556 aaPredicted RBP17.36■□□□□ 0.37
USP6NL-205ENST00000609104 BECN1Q14457 450 aa17.33■□□□□ 0.37
USP6NL-205ENST00000609104 DDRGK1Q96HY6 314 aa17.33■□□□□ 0.37
USP6NL-205ENST00000609104 MIER1Q8N108 512 aa17.33■□□□□ 0.36
USP6NL-205ENST00000609104 NCLP19338 710 aaKnown RBP17.32■□□□□ 0.36
USP6NL-205ENST00000609104 A0A0G2JS52 829 aa17.29■□□□□ 0.36
USP6NL-205ENST00000609104 TPRNQ4KMQ1 711 aa17.29■□□□□ 0.36
USP6NL-205ENST00000609104 TNNT2P45379 298 aaPredicted RBP17.28■□□□□ 0.36
USP6NL-205ENST00000609104 PLEKHG5O94827 1062 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms