RNA–Protein interactions for RNA: ENST00000582717.5

GGA3-214, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2 BASIC

Gene GGA3, Length 2,255 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-214ENST00000582717 NISCHQ9Y2I1 1504 aa29.3■■■□□ 2.28
GGA3-214ENST00000582717 CCDC180Q9P1Z9 1646 aa25.28■■□□□ 1.64
GGA3-214ENST00000582717 ZCCHC6Q5VYS8 1495 aaKnown RBP24.71■■□□□ 1.55
GGA3-214ENST00000582717 SHROOM4Q9ULL8 1493 aa24.39■■□□□ 1.5
GGA3-214ENST00000582717 DCAF8L2P0C7V8 631 aa24.14■■□□□ 1.46
GGA3-214ENST00000582717 DCAF1Q9Y4B6 1507 aa24.14■■□□□ 1.45
GGA3-214ENST00000582717 SUPT5HO00267 1087 aaKnown RBP23.65■■□□□ 1.38
GGA3-214ENST00000582717 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
GGA3-214ENST00000582717 ABCC9O60706 1549 aa23.63■■□□□ 1.37
GGA3-214ENST00000582717 SCRIBQ14160 1630 aa23.45■■□□□ 1.34
GGA3-214ENST00000582717 NACADO15069 1562 aa23.42■■□□□ 1.34
GGA3-214ENST00000582717 RB1CC1Q8TDY2 1594 aa23.13■■□□□ 1.29
GGA3-214ENST00000582717 RSF1Q96T23 1441 aaPredicted RBP22.94■■□□□ 1.26
GGA3-214ENST00000582717 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
GGA3-214ENST00000582717 CECR2Q9BXF3 1484 aa22.82■■□□□ 1.24
GGA3-214ENST00000582717 UNC13AQ9UPW8 1703 aa22.81■■□□□ 1.24
GGA3-214ENST00000582717 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
GGA3-214ENST00000582717 WIZO95785 1651 aa22.58■■□□□ 1.21
GGA3-214ENST00000582717 BAZ1AQ9NRL2 1556 aaPredicted RBP22.56■■□□□ 1.2
GGA3-214ENST00000582717 BICRAQ9NZM4 1560 aa22.52■■□□□ 1.2
GGA3-214ENST00000582717 HRCP23327 699 aa22.5■■□□□ 1.19
GGA3-214ENST00000582717 SMARCA4P51532 1647 aa22.44■■□□□ 1.18
GGA3-214ENST00000582717 PABPN1Q86U42 306 aaKnown RBP eCLIP22.41■■□□□ 1.18
GGA3-214ENST00000582717 TOP2AP11388 1531 aaKnown RBP22.27■■□□□ 1.16
GGA3-214ENST00000582717 EIF4G1Q04637 1599 aaKnown RBP22.15■■□□□ 1.14
GGA3-214ENST00000582717 SMARCA2P51531 1590 aa22.12■■□□□ 1.13
GGA3-214ENST00000582717 TRIM41Q8WV44 630 aa22.12■■□□□ 1.13
GGA3-214ENST00000582717 PCGF6Q9BYE7 350 aa22.1■■□□□ 1.13
GGA3-214ENST00000582717 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
GGA3-214ENST00000582717 PEG3Q9GZU2 1588 aa22.09■■□□□ 1.13
GGA3-214ENST00000582717 LOC105371045A0A1W2PR82 267 aa22.05■■□□□ 1.12
GGA3-214ENST00000582717 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.1
GGA3-214ENST00000582717 BAZ1BQ9UIG0 1483 aaKnown RBP21.85■■□□□ 1.09
GGA3-214ENST00000582717 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
GGA3-214ENST00000582717 FAM9AQ8IZU1 332 aaPredicted RBP21.84■■□□□ 1.09
GGA3-214ENST00000582717 PPARGC1BQ86YN6 1023 aaKnown RBP21.78■■□□□ 1.08
GGA3-214ENST00000582717 TRIM26Q12899 539 aaPredicted RBP21.71■■□□□ 1.07
GGA3-214ENST00000582717 HMGXB3Q12766 1538 aa21.65■■□□□ 1.06
GGA3-214ENST00000582717 NCAPD3P42695 1498 aa21.64■■□□□ 1.05
GGA3-214ENST00000582717 EHMT2Q96KQ7 1210 aa21.59■■□□□ 1.05
GGA3-214ENST00000582717 WRNQ14191 1432 aaPredicted RBP eCLIP21.56■■□□□ 1.04
GGA3-214ENST00000582717 ZEB1P37275 1124 aaPredicted RBP21.52■■□□□ 1.04
GGA3-214ENST00000582717 SYNJ1O43426 1573 aa21.51■■□□□ 1.03
GGA3-214ENST00000582717 SOGA1O94964 1423 aa21.51■■□□□ 1.03
GGA3-214ENST00000582717 RUSC2Q8N2Y8 1516 aa21.44■■□□□ 1.02
GGA3-214ENST00000582717 EEA1Q15075 1411 aa21.41■■□□□ 1.02
GGA3-214ENST00000582717 CC2D2AQ9P2K1 1620 aa21.36■■□□□ 1.01
GGA3-214ENST00000582717 TOP2BQ02880 1626 aa21.32■■□□□ 1
GGA3-214ENST00000582717 CSRNP3Q8WYN3 585 aa21.32■■□□□ 1
GGA3-214ENST00000582717 CFTRP13569 1480 aa21.31■■□□□ 1
GGA3-214ENST00000582717 BIVM-ERCC5R4GMW8 1640 aa21.29■■□□□ 1
GGA3-214ENST00000582717 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
GGA3-214ENST00000582717 TNIKQ9UKE5 1360 aa21.22■□□□□ 0.99
GGA3-214ENST00000582717 PELP1Q8IZL8 1130 aaKnown RBP21.21■□□□□ 0.99
GGA3-214ENST00000582717 GOLGA3Q08378 1498 aa21.2■□□□□ 0.99
GGA3-214ENST00000582717 CUX1P39880 1505 aa21.2■□□□□ 0.98
GGA3-214ENST00000582717 CEP162Q5TB80 1403 aa21.19■□□□□ 0.98
GGA3-214ENST00000582717 KIF21BO75037 1637 aa21.18■□□□□ 0.98
GGA3-214ENST00000582717 CEP164Q9UPV0 1460 aa21.15■□□□□ 0.98
GGA3-214ENST00000582717 CADPSQ9ULU8 1353 aa21.14■□□□□ 0.97
GGA3-214ENST00000582717 UBTFP17480 764 aaKnown RBP21.12■□□□□ 0.97
GGA3-214ENST00000582717 RAPGEF2Q9Y4G8 1499 aa21.04■□□□□ 0.96
GGA3-214ENST00000582717 PRXQ9BXM0 1461 aa20.94■□□□□ 0.94
GGA3-214ENST00000582717 KIF27Q86VH2 1401 aa20.94■□□□□ 0.94
GGA3-214ENST00000582717 FANCD2Q9BXW9 1451 aa20.94■□□□□ 0.94
GGA3-214ENST00000582717 ERICH3Q5RHP9 1530 aa20.93■□□□□ 0.94
GGA3-214ENST00000582717 NESP48681 1621 aa20.92■□□□□ 0.94
GGA3-214ENST00000582717 SCAF1Q9H7N4 1312 aaKnown RBP20.91■□□□□ 0.94
GGA3-214ENST00000582717 CLIP1P30622 1438 aa20.91■□□□□ 0.94
GGA3-214ENST00000582717 FGD5Q6ZNL6 1462 aa20.88■□□□□ 0.93
GGA3-214ENST00000582717 CUX2O14529 1486 aa20.84■□□□□ 0.93
GGA3-214ENST00000582717 LAMC3Q9Y6N6 1575 aa20.82■□□□□ 0.92
GGA3-214ENST00000582717 DNMBPQ6XZF7 1577 aa20.82■□□□□ 0.92
GGA3-214ENST00000582717 DNAJC5BQ9UF47 199 aa20.81■□□□□ 0.92
GGA3-214ENST00000582717 TTBK1Q5TCY1 1321 aaPredicted RBP20.79■□□□□ 0.92
GGA3-214ENST00000582717 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.92
GGA3-214ENST00000582717 TOPBP1Q92547 1522 aa20.77■□□□□ 0.92
GGA3-214ENST00000582717 RANGAP1P46060 587 aaPredicted RBP20.75■□□□□ 0.91
GGA3-214ENST00000582717 IGF1RP08069 1367 aa20.74■□□□□ 0.91
GGA3-214ENST00000582717 POLA1P09884 1462 aaPredicted RBP20.71■□□□□ 0.91
GGA3-214ENST00000582717 RAD54L2Q9Y4B4 1467 aa20.7■□□□□ 0.9
GGA3-214ENST00000582717 URB2Q14146 1524 aaKnown RBP20.68■□□□□ 0.9
GGA3-214ENST00000582717 ARAP1Q96P48 1450 aa20.68■□□□□ 0.9
GGA3-214ENST00000582717 CCER1Q8TC90 406 aaPredicted RBP20.68■□□□□ 0.9
GGA3-214ENST00000582717 ABCA10Q8WWZ4 1543 aa20.67■□□□□ 0.9
GGA3-214ENST00000582717 ACIN1Q9UKV3 1341 aaKnown RBP20.64■□□□□ 0.9
GGA3-214ENST00000582717 KIF21AQ7Z4S6 1674 aa20.64■□□□□ 0.9
GGA3-214ENST00000582717 PDS5BQ9NTI5 1447 aa20.64■□□□□ 0.89
GGA3-214ENST00000582717 CARMIL1Q5VZK9 1371 aa20.64■□□□□ 0.89
GGA3-214ENST00000582717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.63■□□□□ 0.89
GGA3-214ENST00000582717 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
GGA3-214ENST00000582717 ARHGAP35Q9NRY4 1499 aa20.57■□□□□ 0.88
GGA3-214ENST00000582717 CENPBP07199 599 aaPredicted RBP20.53■□□□□ 0.88
GGA3-214ENST00000582717 APLP2Q06481 763 aa20.53■□□□□ 0.88
GGA3-214ENST00000582717 DIEXFQ68CQ4 756 aaKnown RBP20.51■□□□□ 0.87
GGA3-214ENST00000582717 NEUROD1Q13562 356 aa20.51■□□□□ 0.87
GGA3-214ENST00000582717 CUL7Q14999 1698 aa20.5■□□□□ 0.87
GGA3-214ENST00000582717 ABCA5Q8WWZ7 1642 aa20.49■□□□□ 0.87
GGA3-214ENST00000582717 TDRD9Q8NDG6 1382 aaKnown RBP20.44■□□□□ 0.86
GGA3-214ENST00000582717 TARBP1Q13395 1621 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms