Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.17■□□□□ 0.341e-6■□□□□ 8.7
YBX3P16989 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.331e-6■□□□□ 8.7
YBX3P16989 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.21e-6■□□□□ 8.7
YBX3P16989 CD33-202ENST00000391796 1089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.161e-6■□□□□ 8.7
YBX3P16989 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.141e-6■□□□□ 8.7
YBX3P16989 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.141e-9■□□□□ 8.7
YBX3P16989 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.111e-6■□□□□ 8.7
YBX3P16989 BUB3-204ENST00000407911 895 ntTSL 1 (best)15.75■□□□□ 0.116e-14■□□□□ 8.7
YBX3P16989 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.081e-9■□□□□ 8.7
YBX3P16989 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC15.48■□□□□ 0.071e-6■□□□□ 8.7
YBX3P16989 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.89□□□□□ -0.031e-6■□□□□ 8.7
YBX3P16989 CD33-201ENST00000262262 1444 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.031e-6■□□□□ 8.7
YBX3P16989 OSBP2-207ENST00000433183 930 ntTSL 1 (best)14.81□□□□□ -0.041e-6■□□□□ 8.7
YBX3P16989 USF1-203ENST00000368021 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.051e-6■□□□□ 8.7
YBX3P16989 CD33-204ENST00000436584 1494 ntTSL 1 (best) BASIC14.59□□□□□ -0.071e-6■□□□□ 8.7
YBX3P16989 RAE1-207ENST00000462438 3251 ntTSL 214.44□□□□□ -0.11e-6■□□□□ 8.7
YBX3P16989 OSBP2-212ENST00000452656 2763 ntTSL 1 (best)14.13□□□□□ -0.151e-6■□□□□ 8.7
YBX3P16989 OSBP2-206ENST00000431368 3050 ntTSL 513.67□□□□□ -0.221e-6■□□□□ 8.7
YBX3P16989 CCAR2-210ENST00000521837 549 ntTSL 413.56□□□□□ -0.241e-9■□□□□ 8.7
YBX3P16989 CDCA8-201ENST00000327331 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.261e-6■□□□□ 8.7
YBX3P16989 PAFAH1B2-204ENST00000527958 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.411e-6■□□□□ 8.7
YBX3P16989 OSBP2-208ENST00000437268 3580 ntTSL 2 BASIC12.14□□□□□ -0.471e-6■□□□□ 8.7
YBX3P16989 USF1-204ENST00000472217 1097 ntTSL 212.11□□□□□ -0.471e-6■□□□□ 8.7
YBX3P16989 CCAR2-208ENST00000521301 337 ntTSL 3 BASIC12.05□□□□□ -0.481e-9■□□□□ 8.7
YBX3P16989 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC11.9□□□□□ -0.51e-6■□□□□ 8.7
YBX3P16989 CCAR2-213ENST00000523801 549 ntTSL 411.45□□□□□ -0.581e-9■□□□□ 8.7
YBX3P16989 OSBP2-204ENST00000407373 3669 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.581e-6■□□□□ 8.7
YBX3P16989 WDR36-203ENST00000506538 7048 ntTSL 1 (best) BASIC10.94□□□□□ -0.661e-6■□□□□ 8.7
YBX3P16989 WDR36-206ENST00000612402 6592 ntTSL 1 (best) BASIC10.92□□□□□ -0.661e-6■□□□□ 8.7
YBX3P16989 CDCA8-202ENST00000373055 2469 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.671e-6■□□□□ 8.7
YBX3P16989 OSBP2-218ENST00000496575 753 ntTSL 310.28□□□□□ -0.761e-6■□□□□ 8.7
YBX3P16989 MKKS-203ENST00000609375 882 ntTSL 2 BASIC10.1□□□□□ -0.791e-6■□□□□ 8.7
YBX3P16989 DAP-204ENST00000508646 277 ntTSL 28.94□□□□□ -0.981e-6■□□□□ 8.7
YBX3P16989 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC8.48□□□□□ -1.051e-6■□□□□ 8.7
YBX3P16989 CD33-205ENST00000598473 4728 ntTSL 28.28□□□□□ -1.081e-6■□□□□ 8.7
YBX3P16989 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC8.25□□□□□ -1.096e-14■□□□□ 8.7
YBX3P16989 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC8.09□□□□□ -1.111e-6■□□□□ 8.7
YBX3P16989 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC7.99□□□□□ -1.131e-6■□□□□ 8.7
YBX3P16989 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.151e-6■□□□□ 8.7
YBX3P16989 USP25-206ENST00000453553 611 ntTSL 37.2□□□□□ -1.261e-6■□□□□ 8.7
YBX3P16989 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51e-6■□□□□ 8.7
YBX3P16989 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.64□□□□□ -1.511e-6■□□□□ 8.7
YBX3P16989 XPO7-209ENST00000522015 444 ntTSL 35.4□□□□□ -1.541e-6■□□□□ 8.7
YBX3P16989 GYG1-204ENST00000465547 230 ntTSL 35.09□□□□□ -1.591e-6■□□□□ 8.7
YBX3P16989 RRM2-204ENST00000461327 580 ntTSL 222.77■■□□□ 1.244e-8■□□□□ 8.7
YBX3P16989 RRM2-209ENST00000491447 644 ntTSL 221.24■□□□□ 0.994e-8■□□□□ 8.7
YBX3P16989 RRM2-203ENST00000459969 787 ntTSL 216.27■□□□□ 0.24e-8■□□□□ 8.7
YBX3P16989 RRM2-210ENST00000498343 560 ntTSL 215.61■□□□□ 0.094e-8■□□□□ 8.7
YBX3P16989 HMGN2-202ENST00000460563 1045 ntTSL 514.99□□□□□ -0.012e-22■□□□□ 8.7
YBX3P16989 HMGN2-204ENST00000464888 565 ntTSL 214.15□□□□□ -0.142e-22■□□□□ 8.7
YBX3P16989 HMGN2-203ENST00000463817 853 ntTSL 210.95□□□□□ -0.662e-22■□□□□ 8.7
YBX3P16989 HMGN2-206ENST00000467700 932 ntTSL 29.97□□□□□ -0.812e-22■□□□□ 8.7
YBX3P16989 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.962e-22■□□□□ 8.7
YBX3P16989 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.072e-22■□□□□ 8.7
YBX3P16989 TMBIM1-209ENST00000437694 992 ntTSL 213.94□□□□□ -0.182e-8■□□□□ 8.7
YBX3P16989 NUP62-206ENST00000595463 563 ntTSL 419.46■□□□□ 0.716e-7■□□□□ 8.7
YBX3P16989 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.94■■■□□ 2.861e-6■□□□□ 8.7
YBX3P16989 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.731e-6■□□□□ 8.7
YBX3P16989 SLC9A3R2-205ENST00000564033 1087 ntTSL 225.41■■□□□ 1.661e-6■□□□□ 8.7
YBX3P16989 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC22.76■■□□□ 1.231e-6■□□□□ 8.7
YBX3P16989 SLC9A3R2-207ENST00000565855 759 ntTSL 221.59■■□□□ 1.051e-6■□□□□ 8.7
YBX3P16989 SLC9A3R2-203ENST00000561844 738 ntTSL 319.03■□□□□ 0.641e-6■□□□□ 8.7
YBX3P16989 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.94■□□□□ 0.461e-6■□□□□ 8.7
YBX3P16989 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.492e-6■□□□□ 8.7
YBX3P16989 RXRA-201ENST00000356384 5770 ntTSL 516.3■□□□□ 0.22e-6■□□□□ 8.7
YBX3P16989 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.442e-6■□□□□ 8.7
YBX3P16989 DR1-202ENST00000370272 10148 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.562e-6■□□□□ 8.7
YBX3P16989 SUPT20H-208ENST00000470359 792 ntTSL 527.07■■□□□ 1.921e-6■□□□□ 8.7
YBX3P16989 SUPT20H-213ENST00000476109 769 ntTSL 527.07■■□□□ 1.921e-6■□□□□ 8.7
YBX3P16989 PPHLN1-222ENST00000552794 579 ntTSL 426.86■■□□□ 1.891e-6■□□□□ 8.7
YBX3P16989 SNX19-210ENST00000531608 584 ntTSL 425.19■■□□□ 1.621e-6■□□□□ 8.7
YBX3P16989 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.9■■□□□ 1.581e-6■□□□□ 8.7
YBX3P16989 PIEZO1-203ENST00000419505 1635 ntTSL 1 (best)24.88■■□□□ 1.571e-6■□□□□ 8.7
YBX3P16989 CMTR1-205ENST00000475364 1032 ntTSL 524.79■■□□□ 1.561e-6■□□□□ 8.7
YBX3P16989 CORO1C-214ENST00000550542 1245 ntTSL 524.37■■□□□ 1.494e-7■□□□□ 8.7
YBX3P16989 CORO1C-210ENST00000549384 891 ntTSL 523.52■■□□□ 1.364e-7■□□□□ 8.7
YBX3P16989 SUPT20H-223ENST00000497318 734 ntTSL 323.44■■□□□ 1.341e-6■□□□□ 8.7
YBX3P16989 EMC3-203ENST00000470827 570 ntTSL 422.84■■□□□ 1.251e-6■□□□□ 8.7
YBX3P16989 PRR14-208ENST00000565977 603 ntTSL 222.73■■□□□ 1.231e-6■□□□□ 8.7
YBX3P16989 PDXK-208ENST00000461123 637 ntTSL 322.59■■□□□ 1.211e-9■□□□□ 8.7
YBX3P16989 TSN-205ENST00000478165 578 ntTSL 322.51■■□□□ 1.191e-6■□□□□ 8.7
YBX3P16989 TSN-207ENST00000483698 555 ntTSL 222.51■■□□□ 1.191e-6■□□□□ 8.7
YBX3P16989 TSN-209ENST00000490717 560 ntTSL 422.51■■□□□ 1.191e-6■□□□□ 8.7
YBX3P16989 TSN-211ENST00000498545 1118 ntTSL 1 (best)22.51■■□□□ 1.191e-6■□□□□ 8.7
YBX3P16989 HM13-219ENST00000487964 902 ntTSL 522.33■■□□□ 1.171e-6■□□□□ 8.7
YBX3P16989 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.161e-6■□□□□ 8.7
YBX3P16989 NELFCD-208ENST00000482747 1701 ntTSL 222.21■■□□□ 1.151e-6■□□□□ 8.7
YBX3P16989 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.95■■□□□ 1.11e-6■□□□□ 8.7
YBX3P16989 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.59■■□□□ 1.051e-6■□□□□ 8.7
YBX3P16989 FKBP4-206ENST00000543769 425 ntTSL 521.58■■□□□ 1.051e-6■□□□□ 8.7
YBX3P16989 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.45■■□□□ 1.021e-6■□□□□ 8.7
YBX3P16989 PIEZO1-205ENST00000472168 663 ntTSL 221.34■■□□□ 1.011e-6■□□□□ 8.7
YBX3P16989 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.011e-6■□□□□ 8.7
YBX3P16989 SNX19-212ENST00000533318 1565 ntTSL 221.3■■□□□ 11e-6■□□□□ 8.7
YBX3P16989 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.971e-6■□□□□ 8.7
YBX3P16989 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.971e-6■□□□□ 8.7
YBX3P16989 ANAPC7-211ENST00000552087 910 ntTSL 520.97■□□□□ 0.954e-7■□□□□ 8.7
YBX3P16989 HM13-220ENST00000492709 1248 ntTSL 520.96■□□□□ 0.951e-6■□□□□ 8.7
YBX3P16989 RIOK3-208ENST00000584052 659 ntTSL 220.72■□□□□ 0.911e-9■□□□□ 8.7
YBX3P16989 PRR14-206ENST00000564946 2117 ntTSL 220.33■□□□□ 0.851e-6■□□□□ 8.7
Retrieved 100 of 29,075 protein–RNA pairs in 496.3 ms