RNA–Protein interactions for RNA: ENST00000489794.1

VPS26A-206, Transcript of VPS26, retromer complex component A, humanhuman

TSL 3 BASIC

Gene VPS26A, Length 928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-206ENST00000489794 AEBP2Q6ZN18 517 aaPredicted RBP28.79■■■□□ 2.2
VPS26A-206ENST00000489794 CHIC1Q5VXU3 224 aa27.6■■■□□ 2.01
VPS26A-206ENST00000489794 SENP3Q9H4L4 574 aaPredicted RBP24.64■■□□□ 1.54
VPS26A-206ENST00000489794 PHF23Q9BUL5 403 aaPredicted RBP24.32■■□□□ 1.48
VPS26A-206ENST00000489794 FOXD1Q16676 465 aa22.88■■□□□ 1.25
VPS26A-206ENST00000489794 PLPPR3Q6T4P5 718 aa22.44■■□□□ 1.18
VPS26A-206ENST00000489794 PPP6R1Q9UPN7 881 aa21.51■■□□□ 1.03
VPS26A-206ENST00000489794 ADRA2BP18089 450 aa21.47■■□□□ 1.03
VPS26A-206ENST00000489794 POTEDQ86YR6 584 aa21.47■■□□□ 1.03
VPS26A-206ENST00000489794 PIAS4Q8N2W9 510 aaPredicted RBP21.46■■□□□ 1.03
VPS26A-206ENST00000489794 MSH5O43196 834 aa21.43■■□□□ 1.02
VPS26A-206ENST00000489794 SCAF1Q9H7N4 1312 aaKnown RBP19.79■□□□□ 0.76
VPS26A-206ENST00000489794 PPP4R3CPQ6ZMV5 832 aa19.73■□□□□ 0.75
VPS26A-206ENST00000489794 MAPK8IP2Q13387 824 aaPredicted RBP19.65■□□□□ 0.74
VPS26A-206ENST00000489794 DMRT2Q9Y5R5 561 aa19.54■□□□□ 0.72
VPS26A-206ENST00000489794 KCNA4P22459 653 aa19.53■□□□□ 0.72
VPS26A-206ENST00000489794 NCBP3Q53F19 620 aaKnown RBP19.42■□□□□ 0.7
VPS26A-206ENST00000489794 CNKSR2Q8WXI2 1034 aa19.19■□□□□ 0.66
VPS26A-206ENST00000489794 NPM3O75607 178 aaKnown RBP18.99■□□□□ 0.63
VPS26A-206ENST00000489794 HOXD11P31277 338 aaPredicted RBP18.91■□□□□ 0.62
VPS26A-206ENST00000489794 RNF216Q9NWF9 866 aaPredicted RBP18.84■□□□□ 0.61
VPS26A-206ENST00000489794 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
VPS26A-206ENST00000489794 SLC4A1APQ9BWU0 796 aaKnown RBP18.72■□□□□ 0.59
VPS26A-206ENST00000489794 DNAJC5BQ9UF47 199 aa18.56■□□□□ 0.56
VPS26A-206ENST00000489794 CACNB1Q02641 598 aaPredicted RBP18.52■□□□□ 0.56
VPS26A-206ENST00000489794 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
VPS26A-206ENST00000489794 RNF39Q9H2S5 420 aa18.25■□□□□ 0.51
VPS26A-206ENST00000489794 CSRNP3Q8WYN3 585 aa18.1■□□□□ 0.49
VPS26A-206ENST00000489794 C1QBPQ07021 282 aaKnown RBP18.05■□□□□ 0.48
VPS26A-206ENST00000489794 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.05■□□□□ 0.48
VPS26A-206ENST00000489794 FOXD4L1Q9NU39 408 aa18■□□□□ 0.47
VPS26A-206ENST00000489794 ZBTB22O15209 634 aa17.91■□□□□ 0.46
VPS26A-206ENST00000489794 SLC4A2P04920 1241 aa17.83■□□□□ 0.44
VPS26A-206ENST00000489794 MYCNP04198 464 aaPredicted RBP17.63■□□□□ 0.41
VPS26A-206ENST00000489794 U3KPZ7 1027 aaPredicted RBP17.62■□□□□ 0.41
VPS26A-206ENST00000489794 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.46■□□□□ 0.39
VPS26A-206ENST00000489794 HNRNPUL2Q1KMD3 747 aaKnown RBP17.46■□□□□ 0.39
VPS26A-206ENST00000489794 ATXN8OSP0DMR3 200 aa17.43■□□□□ 0.38
VPS26A-206ENST00000489794 SAMD1Q6SPF0 538 aaPredicted RBP17.36■□□□□ 0.37
VPS26A-206ENST00000489794 CAPN15O75808 1086 aa17.32■□□□□ 0.36
VPS26A-206ENST00000489794 APLP2Q06481 763 aa17.3■□□□□ 0.36
VPS26A-206ENST00000489794 SPINK5Q9NQ38 1064 aaPredicted RBP17.3■□□□□ 0.36
VPS26A-206ENST00000489794 DSG3P32926 999 aa17.14■□□□□ 0.33
VPS26A-206ENST00000489794 ZNF219Q9P2Y4 722 aaPredicted RBP17.1■□□□□ 0.33
VPS26A-206ENST00000489794 TRHP20396 242 aaPredicted RBP17.08■□□□□ 0.32
VPS26A-206ENST00000489794 ATF5Q9Y2D1 282 aaPredicted RBP16.96■□□□□ 0.31
VPS26A-206ENST00000489794 ABCB7O75027 752 aa16.89■□□□□ 0.29
VPS26A-206ENST00000489794 POTEHQ6S545 545 aa16.75■□□□□ 0.27
VPS26A-206ENST00000489794 POLA2Q14181 598 aa16.68■□□□□ 0.26
VPS26A-206ENST00000489794 FBLN2P98095 1184 aa16.45■□□□□ 0.22
VPS26A-206ENST00000489794 ZBTB12Q9Y330 459 aaPredicted RBP16.45■□□□□ 0.22
VPS26A-206ENST00000489794 RBM42Q9BTD8 480 aaKnown RBP16.43■□□□□ 0.22
VPS26A-206ENST00000489794 FKBP8Q14318 412 aa16.37■□□□□ 0.21
VPS26A-206ENST00000489794 MKRN4PQ13434 485 aaPredicted RBP16.27■□□□□ 0.2
VPS26A-206ENST00000489794 SPDYE4A6NLX3 237 aa16.14■□□□□ 0.17
VPS26A-206ENST00000489794 OSCARQ8IYS5 282 aa16.08■□□□□ 0.16
VPS26A-206ENST00000489794 AKT1S1Q96B36 256 aa16.07■□□□□ 0.16
VPS26A-206ENST00000489794 SPDYE2BA6NHP3 402 aa15.96■□□□□ 0.15
VPS26A-206ENST00000489794 SPDYE6P0CI01 402 aa15.96■□□□□ 0.15
VPS26A-206ENST00000489794 SPDYE2Q495Y8 402 aa15.96■□□□□ 0.15
VPS26A-206ENST00000489794 CHRDL2Q6WN34 429 aa15.95■□□□□ 0.14
VPS26A-206ENST00000489794 PROM2Q8N271 834 aa15.92■□□□□ 0.14
VPS26A-206ENST00000489794 REM2Q8IYK8 340 aaPredicted RBP15.89■□□□□ 0.13
VPS26A-206ENST00000489794 ZNF692Q9BU19 519 aaPredicted RBP15.89■□□□□ 0.13
VPS26A-206ENST00000489794 FBXO3Q9UK99 471 aa15.87■□□□□ 0.13
VPS26A-206ENST00000489794 SSUH2Q9Y2M2 353 aa15.81■□□□□ 0.12
VPS26A-206ENST00000489794 PITPNM1O00562 1244 aa15.69■□□□□ 0.1
VPS26A-206ENST00000489794 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS26A-206ENST00000489794 STAG3Q9UJ98 1225 aa15.59■□□□□ 0.09
VPS26A-206ENST00000489794 PIP4P2Q8N4L2 257 aa15.58■□□□□ 0.08
VPS26A-206ENST00000489794 SPDYE1Q8NFV5 336 aaPredicted RBP15.57■□□□□ 0.08
VPS26A-206ENST00000489794 FXR2P51116 673 aaKnown RBP eCLIP15.54■□□□□ 0.08
VPS26A-206ENST00000489794 VASPP50552 380 aaPredicted RBP15.53■□□□□ 0.08
VPS26A-206ENST00000489794 AMER1Q5JTC6 1135 aaPredicted RBP15.52■□□□□ 0.08
VPS26A-206ENST00000489794 SP7Q8TDD2 431 aaPredicted RBP15.52■□□□□ 0.08
VPS26A-206ENST00000489794 CLEC11AQ9Y240 323 aa15.51■□□□□ 0.07
VPS26A-206ENST00000489794 PLEKHG5O94827 1062 aa15.33■□□□□ 0.04
VPS26A-206ENST00000489794 PRR29P0C7W0 189 aa15.31■□□□□ 0.04
VPS26A-206ENST00000489794 PRKAR2AP13861 404 aaKnown RBP15.31■□□□□ 0.04
VPS26A-206ENST00000489794 PLCD3Q8N3E9 789 aa15.31■□□□□ 0.04
VPS26A-206ENST00000489794 RTN4Q9NQC3 1192 aaKnown RBP15.31■□□□□ 0.04
VPS26A-206ENST00000489794 HAX1O00165 279 aa15.3■□□□□ 0.04
VPS26A-206ENST00000489794 IFNLR1Q8IU57 520 aaPredicted RBP15.29■□□□□ 0.04
VPS26A-206ENST00000489794 MIER1Q8N108 512 aa15.28■□□□□ 0.04
VPS26A-206ENST00000489794 ZBTB47Q9UFB7 747 aaPredicted RBP15.24■□□□□ 0.03
VPS26A-206ENST00000489794 KLHL34Q8N239 644 aa15.22■□□□□ 0.03
VPS26A-206ENST00000489794 SPOCK2Q92563 424 aa15.15■□□□□ 0.02
VPS26A-206ENST00000489794 CHADLQ6NUI6 762 aa15.14■□□□□ 0.01
VPS26A-206ENST00000489794 EVX2Q03828 476 aa15.08■□□□□ 0
VPS26A-206ENST00000489794 C19orf67A6NJJ6 358 aa15.03■□□□□ -0
VPS26A-206ENST00000489794 CREBZFQ9NS37 354 aa15.01□□□□□ -0.01
VPS26A-206ENST00000489794 FARP1Q9Y4F1 1045 aaPredicted RBP14.99□□□□□ -0.01
VPS26A-206ENST00000489794 NPM1P06748 294 aaKnown RBP eCLIP14.91□□□□□ -0.02
VPS26A-206ENST00000489794 MNX1P50219 401 aaPredicted RBP14.88□□□□□ -0.03
VPS26A-206ENST00000489794 PKD2Q13563 968 aa14.88□□□□□ -0.03
VPS26A-206ENST00000489794 GSE1Q14687 1217 aa14.85□□□□□ -0.03
VPS26A-206ENST00000489794 CD44P16070 742 aaKnown RBP14.84□□□□□ -0.03
VPS26A-206ENST00000489794 TRIM41Q8WV44 630 aa14.84□□□□□ -0.03
VPS26A-206ENST00000489794 NUBP1P53384 320 aa14.83□□□□□ -0.04
VPS26A-206ENST00000489794 CIZ1Q9ULV3 898 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms