RNA–Protein interactions for RNA: ENST00000481739.1

RXRA-202, Transcript of retinoid X receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RXRA, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRA-202ENST00000481739 NISCHQ9Y2I1 1504 aa35.3■■■■□ 3.24
RXRA-202ENST00000481739 CCDC180Q9P1Z9 1646 aa30.89■■■□□ 2.54
RXRA-202ENST00000481739 ZCCHC6Q5VYS8 1495 aaKnown RBP29.59■■■□□ 2.33
RXRA-202ENST00000481739 ABCC9O60706 1549 aa29.49■■■□□ 2.31
RXRA-202ENST00000481739 DCAF8L2P0C7V8 631 aa29.39■■■□□ 2.3
RXRA-202ENST00000481739 DCAF1Q9Y4B6 1507 aa29.15■■■□□ 2.26
RXRA-202ENST00000481739 MYO15BQ96JP2 1530 aa28.87■■■□□ 2.21
RXRA-202ENST00000481739 NACADO15069 1562 aa28.83■■■□□ 2.21
RXRA-202ENST00000481739 SHROOM4Q9ULL8 1493 aa28.74■■■□□ 2.19
RXRA-202ENST00000481739 RB1CC1Q8TDY2 1594 aa28.67■■■□□ 2.18
RXRA-202ENST00000481739 SCRIBQ14160 1630 aa28.44■■■□□ 2.14
RXRA-202ENST00000481739 UNC13AQ9UPW8 1703 aa28.08■■■□□ 2.09
RXRA-202ENST00000481739 PABPN1Q86U42 306 aaKnown RBP eCLIP27.78■■■□□ 2.04
RXRA-202ENST00000481739 BICRAQ9NZM4 1560 aa27.76■■■□□ 2.03
RXRA-202ENST00000481739 SUPT5HO00267 1087 aaKnown RBP27.57■■■□□ 2
RXRA-202ENST00000481739 CECR2Q9BXF3 1484 aa27.47■■□□□ 1.99
RXRA-202ENST00000481739 RSF1Q96T23 1441 aaPredicted RBP27.3■■□□□ 1.96
RXRA-202ENST00000481739 BAZ1AQ9NRL2 1556 aaPredicted RBP27.29■■□□□ 1.96
RXRA-202ENST00000481739 MROH2BQ7Z745 1585 aa27.28■■□□□ 1.96
RXRA-202ENST00000481739 SMARCA4P51532 1647 aa27.2■■□□□ 1.94
RXRA-202ENST00000481739 WIZO95785 1651 aa27.07■■□□□ 1.92
RXRA-202ENST00000481739 EIF4G1Q04637 1599 aaKnown RBP26.98■■□□□ 1.91
RXRA-202ENST00000481739 PEG3Q9GZU2 1588 aa26.82■■□□□ 1.88
RXRA-202ENST00000481739 ATAD2BQ9ULI0 1458 aa26.8■■□□□ 1.88
RXRA-202ENST00000481739 SMARCA2P51531 1590 aa26.8■■□□□ 1.88
RXRA-202ENST00000481739 TOP2AP11388 1531 aaKnown RBP26.75■■□□□ 1.87
RXRA-202ENST00000481739 BAZ1BQ9UIG0 1483 aaKnown RBP26.68■■□□□ 1.86
RXRA-202ENST00000481739 CHIC1Q5VXU3 224 aa26.67■■□□□ 1.86
RXRA-202ENST00000481739 CC2D2AQ9P2K1 1620 aa26.65■■□□□ 1.86
RXRA-202ENST00000481739 NCAPD3P42695 1498 aa26.6■■□□□ 1.85
RXRA-202ENST00000481739 HMGXB3Q12766 1538 aa26.54■■□□□ 1.84
RXRA-202ENST00000481739 CCDC88BA6NC98 1476 aa26.49■■□□□ 1.83
RXRA-202ENST00000481739 DNAJC5BQ9UF47 199 aa26.18■■□□□ 1.78
RXRA-202ENST00000481739 TRIM41Q8WV44 630 aa25.98■■□□□ 1.75
RXRA-202ENST00000481739 CFTRP13569 1480 aa25.95■■□□□ 1.74
RXRA-202ENST00000481739 CADPSQ9ULU8 1353 aa25.93■■□□□ 1.74
RXRA-202ENST00000481739 ABCC8Q09428 1581 aa25.88■■□□□ 1.73
RXRA-202ENST00000481739 PRDM2Q13029 1718 aa25.83■■□□□ 1.73
RXRA-202ENST00000481739 NESP48681 1621 aa25.8■■□□□ 1.72
RXRA-202ENST00000481739 LAMC3Q9Y6N6 1575 aa25.76■■□□□ 1.71
RXRA-202ENST00000481739 WRNQ14191 1432 aaPredicted RBP eCLIP25.74■■□□□ 1.719e-6■■■■■ 50.1
RXRA-202ENST00000481739 FANCD2Q9BXW9 1451 aa25.66■■□□□ 1.7
RXRA-202ENST00000481739 SYNJ1O43426 1573 aa25.63■■□□□ 1.69
RXRA-202ENST00000481739 PDS5BQ9NTI5 1447 aa25.59■■□□□ 1.69
RXRA-202ENST00000481739 LOC105371045A0A1W2PR82 267 aa25.56■■□□□ 1.68
RXRA-202ENST00000481739 TOP2BQ02880 1626 aa25.53■■□□□ 1.68
RXRA-202ENST00000481739 CEP164Q9UPV0 1460 aa25.53■■□□□ 1.68
RXRA-202ENST00000481739 CUX1P39880 1505 aa25.52■■□□□ 1.68
RXRA-202ENST00000481739 BIVM-ERCC5R4GMW8 1640 aa25.51■■□□□ 1.67
RXRA-202ENST00000481739 KIF21AQ7Z4S6 1674 aa25.49■■□□□ 1.67
RXRA-202ENST00000481739 FAM9AQ8IZU1 332 aaPredicted RBP25.47■■□□□ 1.67
RXRA-202ENST00000481739 EEA1Q15075 1411 aa25.42■■□□□ 1.66
RXRA-202ENST00000481739 DNMBPQ6XZF7 1577 aa25.38■■□□□ 1.65
RXRA-202ENST00000481739 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
RXRA-202ENST00000481739 TOPBP1Q92547 1522 aa25.34■■□□□ 1.65
RXRA-202ENST00000481739 SOGA1O94964 1423 aa25.33■■□□□ 1.65
RXRA-202ENST00000481739 URB2Q14146 1524 aaKnown RBP25.33■■□□□ 1.64
RXRA-202ENST00000481739 FGD5Q6ZNL6 1462 aa25.3■■□□□ 1.64
RXRA-202ENST00000481739 MRC2Q9UBG0 1479 aa25.27■■□□□ 1.64
RXRA-202ENST00000481739 RUSC2Q8N2Y8 1516 aa25.25■■□□□ 1.63
RXRA-202ENST00000481739 POLA1P09884 1462 aaPredicted RBP25.19■■□□□ 1.62
RXRA-202ENST00000481739 EHMT2Q96KQ7 1210 aa25.16■■□□□ 1.62
RXRA-202ENST00000481739 CSRNP3Q8WYN3 585 aa25.15■■□□□ 1.62
RXRA-202ENST00000481739 RAD54L2Q9Y4B4 1467 aa25.13■■□□□ 1.61
RXRA-202ENST00000481739 WDR62O43379 1518 aa25.11■■□□□ 1.61
RXRA-202ENST00000481739 KIF27Q86VH2 1401 aa25.11■■□□□ 1.61
RXRA-202ENST00000481739 CUX2O14529 1486 aa25.1■■□□□ 1.61
RXRA-202ENST00000481739 THOC2Q8NI27 1593 aaKnown RBP25.09■■□□□ 1.61
RXRA-202ENST00000481739 ABCA10Q8WWZ4 1543 aa25.04■■□□□ 1.6
RXRA-202ENST00000481739 GOLGA3Q08378 1498 aa25.01■■□□□ 1.59
RXRA-202ENST00000481739 TNIKQ9UKE5 1360 aa25.01■■□□□ 1.59
RXRA-202ENST00000481739 KIF21BO75037 1637 aa24.98■■□□□ 1.59
RXRA-202ENST00000481739 WDR97A6NE52 1622 aa24.97■■□□□ 1.59
RXRA-202ENST00000481739 TARBP1Q13395 1621 aaKnown RBP24.97■■□□□ 1.59
RXRA-202ENST00000481739 TDRD9Q8NDG6 1382 aaKnown RBP24.93■■□□□ 1.58
RXRA-202ENST00000481739 IFT140Q96RY7 1462 aa24.92■■□□□ 1.58
RXRA-202ENST00000481739 IGF1RP08069 1367 aa24.89■■□□□ 1.57
RXRA-202ENST00000481739 TRIM26Q12899 539 aaPredicted RBP24.89■■□□□ 1.57
RXRA-202ENST00000481739 PCGF6Q9BYE7 350 aa24.88■■□□□ 1.57
RXRA-202ENST00000481739 UBTFP17480 764 aaKnown RBP24.87■■□□□ 1.57
RXRA-202ENST00000481739 CEP162Q5TB80 1403 aa24.86■■□□□ 1.57
RXRA-202ENST00000481739 GAPVD1Q14C86 1478 aa24.86■■□□□ 1.57
RXRA-202ENST00000481739 ABCA5Q8WWZ7 1642 aa24.85■■□□□ 1.57
RXRA-202ENST00000481739 PRXQ9BXM0 1461 aa24.83■■□□□ 1.57
RXRA-202ENST00000481739 RAPGEF2Q9Y4G8 1499 aa24.83■■□□□ 1.56
RXRA-202ENST00000481739 AQRO60306 1485 aaKnown RBP eCLIP24.8■■□□□ 1.565e-7■■■■□ 25.1
RXRA-202ENST00000481739 ZNF608Q9ULD9 1512 aaPredicted RBP24.79■■□□□ 1.56
RXRA-202ENST00000481739 CARMIL1Q5VZK9 1371 aa24.79■■□□□ 1.56
RXRA-202ENST00000481739 ERICH3Q5RHP9 1530 aa24.78■■□□□ 1.56
RXRA-202ENST00000481739 PBRM1Q86U86 1689 aa24.74■■□□□ 1.55
RXRA-202ENST00000481739 CUL7Q14999 1698 aa24.73■■□□□ 1.55
RXRA-202ENST00000481739 EIF4G3O43432 1585 aaKnown RBP24.7■■□□□ 1.55
RXRA-202ENST00000481739 GRIN2BQ13224 1484 aa24.69■■□□□ 1.54
RXRA-202ENST00000481739 CLIP1P30622 1438 aa24.59■■□□□ 1.53
RXRA-202ENST00000481739 RANGAP1P46060 587 aaPredicted RBP24.58■■□□□ 1.53
RXRA-202ENST00000481739 FHAD1B1AJZ9 1412 aa24.57■■□□□ 1.52
RXRA-202ENST00000481739 HRCP23327 699 aa24.57■■□□□ 1.52
RXRA-202ENST00000481739 ADAMTS12P58397 1594 aa24.56■■□□□ 1.52
RXRA-202ENST00000481739 SNAPC4Q5SXM2 1469 aa24.56■■□□□ 1.52
RXRA-202ENST00000481739 MAGI1Q96QZ7 1491 aaPredicted RBP24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms