RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 NISCHQ9Y2I1 1504 aa22.43■■□□□ 1.18
USF1-204ENST00000472217 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
USF1-204ENST00000472217 ABCC9O60706 1549 aa19.87■□□□□ 0.77
USF1-204ENST00000472217 RB1CC1Q8TDY2 1594 aa19■□□□□ 0.63
USF1-204ENST00000472217 NACADO15069 1562 aa18.91■□□□□ 0.62
USF1-204ENST00000472217 DCAF8L2P0C7V8 631 aa18.79■□□□□ 0.6
USF1-204ENST00000472217 MYO15BQ96JP2 1530 aa18.71■□□□□ 0.59
USF1-204ENST00000472217 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
USF1-204ENST00000472217 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
USF1-204ENST00000472217 DCAF1Q9Y4B6 1507 aa18.54■□□□□ 0.56
USF1-204ENST00000472217 PABPN1Q86U42 306 aaKnown RBP eCLIP18.49■□□□□ 0.555e-6■■■■□ 22.2
USF1-204ENST00000472217 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
USF1-204ENST00000472217 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
USF1-204ENST00000472217 SCRIBQ14160 1630 aa18.3■□□□□ 0.52
USF1-204ENST00000472217 SHROOM4Q9ULL8 1493 aa18.21■□□□□ 0.51
USF1-204ENST00000472217 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
USF1-204ENST00000472217 CC2D2AQ9P2K1 1620 aa17.97■□□□□ 0.47
USF1-204ENST00000472217 CECR2Q9BXF3 1484 aa17.87■□□□□ 0.45
USF1-204ENST00000472217 SMARCA4P51532 1647 aa17.48■□□□□ 0.39
USF1-204ENST00000472217 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
USF1-204ENST00000472217 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
USF1-204ENST00000472217 BAZ1AQ9NRL2 1556 aaPredicted RBP17.4■□□□□ 0.38
USF1-204ENST00000472217 SMARCA2P51531 1590 aa17.39■□□□□ 0.37
USF1-204ENST00000472217 HMGXB3Q12766 1538 aa17.36■□□□□ 0.37
USF1-204ENST00000472217 PEG3Q9GZU2 1588 aa17.3■□□□□ 0.36
USF1-204ENST00000472217 MROH2BQ7Z745 1585 aa17.29■□□□□ 0.36
USF1-204ENST00000472217 BAZ1BQ9UIG0 1483 aaKnown RBP17.27■□□□□ 0.36
USF1-204ENST00000472217 ERCC6Q03468 1493 aa17.13■□□□□ 0.33
USF1-204ENST00000472217 NESP48681 1621 aa17.13■□□□□ 0.33
USF1-204ENST00000472217 WIZO95785 1651 aa17.1■□□□□ 0.33
USF1-204ENST00000472217 CUX2O14529 1486 aa17.05■□□□□ 0.32
USF1-204ENST00000472217 LAMC3Q9Y6N6 1575 aa17.04■□□□□ 0.32
USF1-204ENST00000472217 RSF1Q96T23 1441 aaPredicted RBP16.98■□□□□ 0.31
USF1-204ENST00000472217 THOC2Q8NI27 1593 aaKnown RBP16.94■□□□□ 0.3
USF1-204ENST00000472217 KIF21AQ7Z4S6 1674 aa16.94■□□□□ 0.3
USF1-204ENST00000472217 TOP2AP11388 1531 aaKnown RBP16.91■□□□□ 0.3
USF1-204ENST00000472217 CADPSQ9ULU8 1353 aa16.9■□□□□ 0.3
USF1-204ENST00000472217 PDS5BQ9NTI5 1447 aa16.9■□□□□ 0.3
USF1-204ENST00000472217 DNAJC5Q9H3Z4 198 aa16.78■□□□□ 0.28
USF1-204ENST00000472217 CFTRP13569 1480 aa16.77■□□□□ 0.28
USF1-204ENST00000472217 MRC2Q9UBG0 1479 aa16.77■□□□□ 0.28
USF1-204ENST00000472217 CEP164Q9UPV0 1460 aa16.74■□□□□ 0.27
USF1-204ENST00000472217 WDR62O43379 1518 aa16.74■□□□□ 0.27
USF1-204ENST00000472217 FANCD2Q9BXW9 1451 aa16.73■□□□□ 0.27
USF1-204ENST00000472217 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
USF1-204ENST00000472217 PRDM2Q13029 1718 aa16.67■□□□□ 0.26
USF1-204ENST00000472217 AEBP2Q6ZN18 517 aaPredicted RBP16.62■□□□□ 0.25
USF1-204ENST00000472217 URB2Q14146 1524 aaKnown RBP16.6■□□□□ 0.25
USF1-204ENST00000472217 TOPBP1Q92547 1522 aa16.45■□□□□ 0.22
USF1-204ENST00000472217 DNMBPQ6XZF7 1577 aa16.41■□□□□ 0.22
USF1-204ENST00000472217 ABCC8Q09428 1581 aa16.4■□□□□ 0.22
USF1-204ENST00000472217 IFT140Q96RY7 1462 aa16.39■□□□□ 0.21
USF1-204ENST00000472217 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
USF1-204ENST00000472217 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
USF1-204ENST00000472217 TARBP1Q13395 1621 aaKnown RBP16.3■□□□□ 0.2
USF1-204ENST00000472217 EIF4G3O43432 1585 aaKnown RBP16.3■□□□□ 0.2
USF1-204ENST00000472217 POLA1P09884 1462 aaPredicted RBP16.29■□□□□ 0.2
USF1-204ENST00000472217 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
USF1-204ENST00000472217 OSCARQ8IYS5 282 aa16.25■□□□□ 0.19
USF1-204ENST00000472217 CUX1P39880 1505 aa16.24■□□□□ 0.19
USF1-204ENST00000472217 AQRO60306 1485 aaKnown RBP eCLIP16.22■□□□□ 0.192e-8■■■■■ 47.5
USF1-204ENST00000472217 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
USF1-204ENST00000472217 FGD5Q6ZNL6 1462 aa16.22■□□□□ 0.19
USF1-204ENST00000472217 SOGA1O94964 1423 aa16.19■□□□□ 0.18
USF1-204ENST00000472217 CHD1O14646 1710 aa16.15■□□□□ 0.18
USF1-204ENST00000472217 TDRD9Q8NDG6 1382 aaKnown RBP16.14■□□□□ 0.17
USF1-204ENST00000472217 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
USF1-204ENST00000472217 TRIM41Q8WV44 630 aa16.13■□□□□ 0.17
USF1-204ENST00000472217 RIMBP3CA6NJZ7 1639 aa16.08■□□□□ 0.17
USF1-204ENST00000472217 RIMBP3BA6NNM3 1639 aa16.08■□□□□ 0.17
USF1-204ENST00000472217 RIMBP3Q9UFD9 1639 aa16.08■□□□□ 0.17
USF1-204ENST00000472217 SNAPC4Q5SXM2 1469 aa16.07■□□□□ 0.16
USF1-204ENST00000472217 GRIN2BQ13224 1484 aa16.05■□□□□ 0.16
USF1-204ENST00000472217 FBLN2P98095 1184 aa16.05■□□□□ 0.16
USF1-204ENST00000472217 BIVM-ERCC5R4GMW8 1640 aa16.05■□□□□ 0.16
USF1-204ENST00000472217 ARHGEF11O15085 1522 aa16.04■□□□□ 0.16
USF1-204ENST00000472217 PBRM1Q86U86 1689 aa16.04■□□□□ 0.16
USF1-204ENST00000472217 TOP2BQ02880 1626 aa16.04■□□□□ 0.16
USF1-204ENST00000472217 ABCA10Q8WWZ4 1543 aa16.04■□□□□ 0.16
USF1-204ENST00000472217 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
USF1-204ENST00000472217 ABCA5Q8WWZ7 1642 aa16.03■□□□□ 0.16
USF1-204ENST00000472217 SYNJ1O43426 1573 aa16.03■□□□□ 0.16
USF1-204ENST00000472217 WRNQ14191 1432 aaPredicted RBP eCLIP16.02■□□□□ 0.16
USF1-204ENST00000472217 GAPVD1Q14C86 1478 aa16.01■□□□□ 0.15
USF1-204ENST00000472217 SYNJ2O15056 1496 aa15.98■□□□□ 0.15
USF1-204ENST00000472217 CLASP1Q7Z460 1538 aa15.96■□□□□ 0.15
USF1-204ENST00000472217 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
USF1-204ENST00000472217 ARAP1Q96P48 1450 aa15.9■□□□□ 0.14
USF1-204ENST00000472217 ADAMTS12P58397 1594 aa15.89■□□□□ 0.13
USF1-204ENST00000472217 GRIN2AQ12879 1464 aa15.86■□□□□ 0.13
USF1-204ENST00000472217 CYB5RLQ6IPT4 315 aa15.86■□□□□ 0.13
USF1-204ENST00000472217 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
USF1-204ENST00000472217 FHAD1B1AJZ9 1412 aa15.81■□□□□ 0.12
USF1-204ENST00000472217 CEP170Q5SW79 1584 aa15.81■□□□□ 0.12
USF1-204ENST00000472217 NUP160Q12769 1436 aa15.79■□□□□ 0.12
USF1-204ENST00000472217 ERCC6L2Q5T890 1561 aa15.73■□□□□ 0.11
USF1-204ENST00000472217 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
USF1-204ENST00000472217 KIF27Q86VH2 1401 aa15.69■□□□□ 0.1
USF1-204ENST00000472217 RUSC2Q8N2Y8 1516 aa15.67■□□□□ 0.1
USF1-204ENST00000472217 CUL7Q14999 1698 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms